BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	= 399701	113 (0.910)	6 (0.050)	6/236	NT	5.4%	intergenic (+9/+83)	efeU/tatC2	Ferrous iron permease EfeU/Sec‑independent protein translocase protein TatCy
*	?	USA300TCH1516_ALE	= 399706	108 (0.950)	6 (0.050)	6/236	NT	5.4%	intergenic (+14/+78)	efeU/tatC2	Ferrous iron permease EfeU/Sec‑independent protein translocase protein TatCy

Only 100 of 136 total aligned reads displayed.

AAGACATGTTATTGAAGGATTCCCAACGATTAACTGGTTGGGCTTTTATCCAAGTTATGAACCATTGATAGCACAAGGTGCTTATATTATGGTAGTTGCTATCTTAATCTTTAAATTTAAAAAATAAAAAACAGGC‑CGAGTGCCTGTTTTTTTGTTGCTATATTGGAAATATTCGGTATTGCAGTATAACGATAATCACAGCATTGATTCGTATAAGGTTAATGTGTTGGCGGTTTGCCTCGGCATGTGAACTTAACGATGAACATACTGAACTCAAA  >  USA300TCH1516_ALE/399566‑399843

aaGACATGTTATTGAAGGATTCCCAACGATTAACTGGTTGGGCTTTTATCCAAGTTATGAACCATTGATAGCACAAGGTGCTTATATTATGGTAGTTGCTATCTTAATCTTTAAATTTAAAAAATAAAAAACAGGC‑CGAGt                                                                                                                                           <  1:802526/141‑1 (MQ=255)

  gACATGTTATTGAAGGATTCCCAACGATTAACTGGTTGGGCTTTTATCCAAGTTATGAACCATTGATAGCACAAGGTGCTTATATTATGGTAGTTGCTATCTTAATCTTTAAATTTAAAAAATAAAAAACAGGC‑CGAGTgc                                                                                                                                         >  1:651563‑M2/1‑139 (MQ=255)

      tGTTATTGAAGGATTCCCAACGATTAACTGGTTGGGCTTTTATCCAAGTTATGAACCATTGATAGCACAAGGTGCTTATATTATGGTAGTTGCTATCTTAATCTTTAAATTTAAAAAATAAAAAACAGGC‑CGAGTgcctgt                                                                                                                                     >  1:357884‑M2/1‑135 (MQ=255)

      tGTTATTGAAGGATTCCCAACGATTAACTGGTTGGGCTTTTATCCAAGTTATGAACCATTGATAGCACAAGGTGCTTATATTATGGTAGTTGCTATCTTAATCTTTAAATTTAAAAAATAAAAAACAGGC‑CGAGTgcctgt                                                                                                                                     >  1:136897‑M2/1‑135 (MQ=255)

       gTTATTGAAGGATTCCCAACGATTAACTGGTTGGGCTTTTATCTAAGTTATGAACCATTGATAGCACAAGGTGCTTATATTATGGGAGTTGCTATCTTAATCTTTAAATTTAAAAAATAAAAAACAGGC‑CGAGTgcctgtt                                                                                                                                    >  2:280374‑M2/1‑134 (MQ=255)

        ttATTGAAGGATTCCCAACGATTAACTGGTTGGGCTTTTATCCAAGTTATGAACCATTGATAGCACAAGGTGCTTATATTATGGTAGTTGCTATCTTAATCTTTAAATTTAAAAAATAAAAAACAGGC‑CGAGTgcgtgttt                                                                                                                                   <  4:232840‑M2/141‑9 (MQ=255)

               aGGATTCCCAACGATTAACTGGTTGGGCTTTTATCCAATTTATGAACCATTGATAGCACAAGGTGCTTATATTATGGTAGTTGCTATCTTAATCTTTAAATTTAAAAAATAAAAATCAGGC‑CGAGTGCCTGTTTTTttgtt                                                                                                                            >  1:507331/1‑141 (MQ=255)

               aGGATTCCCAACGATTAACTGGTTGGGCTTTTATCCAAGTTATGAACCATTGATAGCACAAGGTGCTTATATTATGGTAGTTGCTATCTTAATCTTTAAATTTAAAAAATAACAAACAGGC‑CGAGTGCCTGTTTTTttgtt                                                                                                                            <  1:525454/141‑1 (MQ=255)

               aGGATTCCCAACGATTAACTGGTTGGGCTTTTATCCAAGTTATGAACCATTGATAGCACAAGGTGCTTATATTATGGTAGTTGCTATCTTAATCTTTAAATTTAAAAAATAAAAAACAGGC‑CGAGTGCCTGTTTTTttgtt                                                                                                                            >  3:181785/1‑141 (MQ=255)

               aGGATTCCCAACGATTAACTGGTTGGGCTTTTATCCAAGTTATGAACCATTGATAGCACAAGGTGCTTATATTATGGTAGTTGCTATCTTAATCTTTAAATTTAAAAAATAAAAAACAGGC‑CGAGTGCCTGTTTTTttgtt                                                                                                                            >  3:14459/1‑141 (MQ=255)

                ggATTCCCAACGATTAACTGGTTGGGCTTTTATCCAAGTTATGAACCATTGATAGCACAAGGTGCTTATATTATGGTAGTTGCTATCTTAATCTTTAAATTTAAAAAATAAAAAACAGGC‑CGAGTGCCTGTTTTTttgttg                                                                                                                           >  1:679498/1‑141 (MQ=255)

                 gATTCCCAACGATTAACTGGTTGGGCTTTTATCCAAGTTATGAACCATTGATAGCACAAGGTGCTTATATTATGGTAGTTGCTATCTTAATCTTTAAATTTAAAAAATAAAAAACAGGC‑CGAGTGCCTGTTTTTTTGTTGc                                                                                                                          <  1:45982/141‑1 (MQ=255)

                  aTTCCCAACGATTAACTGGTTGGGCTTTTATCCAAGTTATGAACCATTGATAGCACAAGGTGCTTATATTATGGTAGTTGCTATCTTAATCTTTAAATTTAAAAAATAAAAAACAGGC‑CGAGTGCCTGTTTTTTTGTTGCt                                                                                                                         <  1:946024/141‑1 (MQ=255)

                  aTTCCCAACGATTAACTGGTTGGGCTTTTATCCAAGTGATGAACCATTGATAGCACAAGGTGCTTATATTATGGTAGTTGCTATCTTAAGCTTTAAATTTAAAAAATAAAAAACAGGC‑CGAGTGCCTGTTTTTTTGTTGcc                                                                                                                         <  4:23877/141‑2 (MQ=255)

                     cccAACGATTAACTGGTTGGGCTTTTATCCAAGTTATGAACCATTGATAGCACAAGGTGCTTATATTATGGTAGTTGCTATCTTAATCTTTAAATTTAAAAAATAAAAAACAGGC‑CGAGTGCCTGTTTTTTTGTTGCtata                                                                                                                      >  3:88643/1‑141 (MQ=255)

                      ccAACGATTAACTGGTTGGGCTTTTATCCAAGTTATGAACCATTGATAGCACAAGGTGCTTATATTATGGTAGTTGCTATCTTAATCTTTAAATTTAAAAAATAAAACACAGGC‑CGAGTGCCTGTTTTTTTGTTGCTatat                                                                                                                     <  1:563721/141‑1 (MQ=255)

                       cAACGATTAACTGGTTGGGCTTTTATCCAAGTTATGAACCATTGATAGCACAAGGTGCTTATATTATGGTAGTTGCTATCTTAATCTTTAAATTTAAAAAATAAAAAACAGGC‑CGAGTGCTTGTTTTTTTGTTGCTATAtt                                                                                                                    <  1:233652/141‑1 (MQ=255)

                        aaCGATTAACTGGTTGGGCTTTTATCCAAGTTATGAACCATTGATAGCACAAGGTGCTTATATTATGGTAGTTGCTATCTTAATCTTTAAATTTAAAAAATAAAAAACAGGCACTCGcctgttttttattttttaaattt                                                                                                                     >  3:21565‑M2/1‑118 (MQ=255)

                          cGATTAACTGGTTGGGCTTTTATCCAAGTTATGAACCATTGATAGCACAAGGTGCTTATATTATGGTAGTTGCTATCTTAATCTTTAAATTTAAAAAATAAAAAACAGGC‑CGAGTGCCTGTTTTTTTGTTGCTATATTGGa                                                                                                                 <  4:52214/141‑1 (MQ=255)

                           gATTAACTGGTTGGGCTTTTATCCAAGTTATGAACCATTGATAGCACAAGGTGCTTATATTATGGTAGTTGCTATCTTAATCTTTAAATTTAAAAAATAAAAAACAGGC‑CGAGTGCCTGTTTTTTTGTTGCTATATTGGaa                                                                                                                >  3:344918/1‑141 (MQ=255)

                             ttAACTGGTTGGGCTTTTATCCAAGTTATGAACCATTGATAGCACAAGGTGCTTATATTATGGTAGTTGCTATCTTAATCTTTAAATTTAAAAAATAAAAAACAGGC‑CGAGTGCCTGTTTTTTTGTTGCTATATTGGAAat                                                                                                              <  1:1018808/141‑1 (MQ=255)

                             ttAACTGGTTGGGCTTTTATCCAAGTTATGAACCATTGATAGCACAAGGTGCATAAATTATGGTCGTGGCTATCTTAAGCTTTAAATTTAAAAAATAAAAAACAGGC‑CGAGTGCCTGTTTTTTTGTTGCTATATTGGAAat                                                                                                              >  1:1028667/1‑141 (MQ=255)

                               aaCTGGTTGGGCTTTTATCCAAGTTATGAACCATTGATAGCACAAGGTGCTTATATTATGGTAGTTGCTATCTTAATCTTTAAATTTAAAAAATAAAAAACAGGC‑CGAGTGCCTGTTTTTTTGTTGCTATATTGGAAatat                                                                                                            <  3:391015/141‑1 (MQ=255)

                               aaCTGGTTGGGCTTTTATCCAAGTTATGAACCATTGATAGCACAAGGTGCTTATATTATGGTAGTTGCTATCTTAATCTTTAAATTTAAAAAATAAAAAACAGGC‑CGAGTGCCTGTTTTTTTGTTGCTATATTGGAAatat                                                                                                            >  1:478993/1‑141 (MQ=255)

                                 cTGGTTGGGCTTTTATCCAAGTTATGAACCATTGATAGCACAAGGTGCTTATATTATGGTAGTTGCTATCTTAATCTTTAAATTTAAAAAATAAAAAACAGGC‑CGAGTGCCTGTTTTTTTGTTGCTATATTGGAAATATTc                                                                                                          >  1:424185/1‑141 (MQ=255)

                                 cTGGTTGGGCTTTTATCCAAGTTATGAACCATTGATAGCACAAGGTGCTTATATTATGGTAGTTGCTATCTTAATCTTTAAATTTAAAAAATAAAAAACAGGC‑CGAGTGCCTGTTTTTTTGTTGCTATATTGGAAATATTc                                                                                                          >  3:22119/1‑141 (MQ=255)

                                   ggTTGGGCTTTTATCCAAGTTATGAACCATTGATAGCACAAGGTGCTTATATTATGGTAGTTGCTATCTTAATCTTTAAATTTAAAAAATAAAAAACAGGC‑CGAGTGCCTGTTTTTTTGTTGCTATATTGGAAATATTCgg                                                                                                        <  3:178253/141‑1 (MQ=255)

                                      tGGGCTTTTATCCAAGTTATGAACCATTGATAGCACAAGGTGCTTATATTATGGTAGTTGCTATCTTAATCTTTAAATTTAAAAAATAAAAAACAGGC‑CGAGTGCCTGTTTTTTTGTTGCTATATTGGAAATATTCGGTAt                                                                                                     >  1:413345/1‑141 (MQ=255)

                                      tGGGCTTTTATCCAAGTTATGAACCATTGATAGCACAAGGTGCTTATATTATGGTAGTTGCTATCTTAATCTTTAAATTTAAAAAATAAAAAACAGGC‑CGAGTGCCTGTTTTTTTGTTGCTATATTGGAAATATTCGGTAt                                                                                                     >  1:913476/1‑141 (MQ=255)

                                       gggCTTTTATCCAAGTTATGAACCATTGATAGCACAAGGTGCTTATATTATGGTAGTTGCTATCTTAATCTTTAAATTTAAAAAATAAAAAACAGGC‑CGAGTGCCTGTTTTTTTGTTGCTATATTGGAAATATTCGGTAtt                                                                                                    >  3:256829/1‑141 (MQ=255)

                                         gCTTTTATCCAAGTTATGAACCATTGATAGCACAAGGTGCTTATATTATGGTAGTTGCTATCTTAATCTTTAAATTTAAAAAATAAAAAACAGGC‑CGAGTGCCTGTTTTTTTGTTGCTATATTGGAAATATTCGGTATTGc                                                                                                  <  2:208448/141‑1 (MQ=255)

                                            tttATCCAAGTTATGAACCATTGATAGCACAAGGTGCTTATATTATGGTAGTTGCTATCTTAATCTTTAAATTTAAAAAATAAAAAACAGGC‑CGAGTGCCTGTTTTTTTGTTGCTATATTGGAAATATTCGGTATTGCAGt                                                                                               >  1:1000463/1‑141 (MQ=255)

                                            tttATCCAAGTTATGAACCATTGATAGCACAAGGTGCTTATATTATGGTAGTTGCTATCTTAATCGTTAAATTTAAAAAATAAAAAACAGGC‑CGAGTGCCTGTTTTTTTGTTGCTATATTGGAAATATTCGGTATTGCAGt                                                                                               <  3:350682/141‑1 (MQ=255)

                                               aTCCAAGTTATGAACCATTGATAGCACAAGGTGCTTATATTATGGTAGTTGCTATCTTAATCTTTAAATTTAAAAAATAAAAAACAGGC‑CGAGTGCCTGTTTTTTTGTTGCTATATTGGAAATATTCGGTATTGCAGtata                                                                                            <  1:151190/141‑1 (MQ=255)

                                               aTCCAAGTTATGAACCATTGATAGCACAAGGTGCTTATATTATGGTAGTTGCTATCTTAATCTTTAAATTTAAAAAATAAAAAACAGGC‑CGAGTGCCTGTTTTTTTGTTGCTATATTGGAAATATTCGGTATTGCAGtata                                                                                            >  2:722006/1‑141 (MQ=255)

                                                 ccAAGTTATGAACCATTGATAGCACAAGGTGCTTATATTATGGTAGTTGCTATCTTAATCTTTAAATTTAAAAAATAAAAAACAGGC‑CGAGTGCCTGTTTTTTTGTTGCTATATTGGAAATATTCGGTATTGCAGTATAAc                                                                                          <  4:67958/141‑1 (MQ=255)

                                                  cAAGTTATGAACCATTGATAGCACAAGGTGCTTATATTATGGTAGTTGCTATCTTAATCTTTAAATTTAAAAAATAAAAAACAGGC‑CGAGTGCCTGTTTTTTTGTTGCTATATTGGAAATATTCGGTATTGCAGTATAACg                                                                                         >  1:834150/1‑141 (MQ=255)

                                                  cAAGTTATGAACAATTGATAGCACAAGGTGCTTATATTATGGTAGTTGCTATCTTAATCTTTAAATTTAAAAAATAAAAAACAGGC‑CGAGTGCCTGTTTTTTTGTTGCTATATTGGAAATATTCGGTATTGCAGTATAACg                                                                                         <  2:128283/141‑1 (MQ=255)

                                                   aaGTTATGAACCATTGATAGCACAAGGTGCTTATATTATGGTAGTTGCTATCTTAATCTTTAAATTTAAAAAATAAAAAACAGGC‑CGAGTGCCTGTTTTTTTGTTGCTATATTGGAAATATTCGGTATTGCAGTATAACGa                                                                                        <  3:401012/141‑1 (MQ=255)

                                                    aGTTATGAACCATTGATAGCACAAGGTGCTTATATTATGGTAGTTGCTATCTTAATCTTTAAATTTAAAAAATAAAAAACAGGC‑CGAGTGCCTGTTTTTTTGTTGCTATATTGGAAATATTCGGTATTGCAGTATAACGAt                                                                                       >  2:624224/1‑141 (MQ=255)

                                                     gTTATGAACCATTGATAGCACAAGGTGCTTATATTATGGTAGTTGCTATCTTAATCTTTAAATTTAAAAAATAAAAAACAGGC‑CGAGTGCCTGTTTTTTTGTTGCTATATTGGAAATATTCGGTATTGCAGTATAACGATa                                                                                      >  1:378942/1‑141 (MQ=255)

                                                      ttATGAACCATTGATAGCACAAGGTGCTTATATTATGGTAGTTGCTATCTTAATCTTTAAATTTAAAAAATAAAAAACAGGC‑CGAGTGCCTGTTTTTTTGTTGCTATATTGGAAATATTCGGTATTGCAGTATAACGATaa                                                                                     <  1:335286/141‑1 (MQ=255)

                                                      ttATGAACCATTGATAGCACAAGGTGCTTATATTATGGTAGTTGCTATCTTAATCTTTAAATTTAAAAAATAAAAAACAGGC‑ACTCGgcctgttttttattttttaaatttaaagattaagatagcaactaccataatata                                                                                     >  2:480001‑M2/1‑87 (MQ=255)

                                                        aTGAACCATTGATAGCACAAGGTGCTTATATTATGGTAGTTGCTATCTTAATCTTTAAATTTAAAAAATAAAAAACAGGC‑ACTCGgcctgttttttattttttaaatttaaagattaagatagcaactaccataatataag                                                                                   >  1:775399‑M2/1‑85 (MQ=255)

                                                         tGAACCATTGATAGCACAAGGTGCTTATATTATGGTAGTTGCTATCTTAATCTTTAAATTTAAAAAATAAAAAACAGGC‑CGAGTGCCTGTTTTTTTGTTGCTATATTGGAAATATTCGGTATTGCAGTATAACGATAATca                                                                                  >  2:166086/1‑141 (MQ=255)

                                                         tGAACCATTGATAGCACAAGGTGCTTATATTATGGTAGTTGCTATCTTAATCTTTAAATTTAAAAAATAAAAAACAGGC‑CGAGTGCCTGTTTTTTTGTTGCTATATTGGAAATATTCGGTATTGCAGTATAACGATAATca                                                                                  <  1:280060/141‑1 (MQ=255)

                                                          gAACCATTGATAGCACAAGGTGCTTATATTATGGTAGTTGCTATCTTAATCTTTAAATTTAAAAAATAAAAAACAGGC‑CGAGTGCCTGTTTTTTTGTTGCTATATTGGAAATATTCGGTATTGCAGTATAACGATAATcac                                                                                 <  3:351365/141‑1 (MQ=255)

                                                          gAACCATTGATAGCACAAGGTGCTTATATTATGGTAGTTGCTATCTTAATCTTTAAATTTAAAAAATAAAAAACAGGC‑CGAGTGCCTGTTTTTTTGTTGCTATATTGGAAATATTCGGTATTGCAGTATAACGATAATcac                                                                                 <  2:626797/141‑1 (MQ=255)

                                                            aCCATTGATAGGACAAGGTGCTTATATTATGGTAGTTGCTATCTTAATCTTTAAATTTAAAAAATAAAAAACAGGC‑CGAGTGCCTGTTTTTTTGTTGCTATATTGGAAATATTCGGTATTGCAGTATAACGATAATCACAg                                                                               <  1:1070201/141‑1 (MQ=255)

                                                            aCCATTGATAGCACAAGGTGCTTATATTATGGTAGTTGCTATCTTAATCTTTAAATTTAAAAAATAAAAAACAGGC‑CGAGTGCCTGTTTTTTTGTTGCTATATTGGAAATATTCGGTATTGCAGTATAACGATAATCACAg                                                                               >  1:611801/1‑141 (MQ=255)

                                                            aCCATTGATAGCACAAGGTGCTTATATTATGGTAGTTGCTATCTTAATCTTTAAATTTAAAAAATAAAAAACAGGC‑CGAGTGCCTGTTTTTTTGTTGCTATATTGGAAATATTCGGTATTGCAGTATAACGATAATCACAg                                                                               >  3:292348/1‑141 (MQ=255)

                                                              cATTGATAGCACAAGGTGCTTATATTATGGTAGTTGCTATCTTAATCTTTAAATTTAAAAAATAAAAAACAGGC‑CGAGTGCCTGTTTTTTTGTTGCTATATTGGAAATATTCGGTATTGCAGTATAACGATAATCACAGCa                                                                             <  2:424185/141‑1 (MQ=255)

                                                                  gATAGCACAAGGTGCTTATATTATGGTAGTTGCTATACTAATCTTTAAATTTAAAAAATAAAAAACAGGC‑CGAGTGCCTGTTTTTTTGTTGCTATATTGGAAATATTCGGTATTGCAGTATAACGATAATCACAGCATTGa                                                                         <  4:48721/141‑1 (MQ=255)

                                                                   aTAGCACAAGGTGCTTATATTATGGTAGTTGCTATCTTAATCTTTAAATTTAAAAAATAAAAAACAGGC‑CGAGTGCCTGTTTTTTTGTTGCTATATTGGAAATATTCGGTATTGCAGTATAACGATAATCACAGCATTGAt                                                                        <  1:996366/141‑1 (MQ=255)

                                                                     aGCACAAGGTGCTTATATTATGGTAGTTGCTATCTTAATCTTTAAATTTAAAAAATAAAAAACAGGC‑CGAGTGCCTGTTTTTTTGTTGCTATATTGGAAATATTCGGTATTGCAGTATAACGATAATCACAGCATTGATTc                                                                      <  3:399046/141‑1 (MQ=255)

                                                                     aGCACAAGCTGCTTATATTATGTTAGTTGCTATCTTAATCTTTAAATTTAAAAAATAAAAAACAGGC‑CGAGTGCCTGTTTTTTTGTTGCTATATTGGAAATATTCGGTATTGCAGTATAACGATAATCACAGCATTGATTc                                                                      <  4:364960/141‑1 (MQ=255)

                                                                       caccttgTGCTTATATTATGGTAGTTGCTATCTTAATCTTTAAATTTAAAAAATAAAAAACAGGC‑CGAGTGCCTGTTTTTTTGTTGCTATATTGGAAATATTCGGTATTGCAGTATAACGATAATCACAGCATTGATTCGt                                                                    >  4:297573/7‑141 (MQ=255)

                                                                         caAGGTGCTTATATTATGGTAGTTGCTATCTTAATCTTTAAATTTAAAAAATAAAAAACAGGC‑CGAGTGCCTGTTTTTTTGTTGCTATATTGGAAATATTCGGTATTGCAGTATAACGATAATCACAGCATTGATTCGtat                                                                  <  2:1040889/141‑1 (MQ=255)

                                                                           aGGTGCTTATATTATGGTAGTTGCTATCTTAATCTTTAAATTTAAAAAATAAAAAACAGGC‑CGAGTGCCTGTTTTTTTGTTGCTATATTGGAAATATTCGGTATTGCAGTATAACGATAATCACAGCATTGATTCGTATaa                                                                >  3:31143/1‑141 (MQ=255)

                                                                              tGCTTATATTATGGTAGTTGCTATCTTAATCTTTAAATTTAAAAAATAAAAAACAGGC‑CGAGTGCCTGTTTTTTTGTTGCTATATTGGAAATATTCGGTATTGCAGTATAACGATAATCACAGCATTGATTCGTATAAGGt                                                             >  1:261722/1‑141 (MQ=255)

                                                                               gCTTATATTATGGTAGTTGCTATCTTAATCTTTAAATTTAAAAAATAAAAAACAGGC‑CGAGTGCCTGTTTTTTTGTTGCTATATTGGAAATATTCGGTATTGCAGTATAACGATAATCACAGCATTGATTCGTATAAGGtt                                                            <  3:180934/141‑1 (MQ=255)

                                                                                     attatGGTAGTTGCTATCTTAATCTTTAAATTTAAAAAATAAAAAACAGGC‑CGAGTGCCTGTTTTTTTGTTGCTATATTGGAAATATTCGGTATTGCAGTATAACGATAATCACAGCATTGATTCGTATAAGGTTAAtgtg                                                      <  1:840043/141‑1 (MQ=255)

                                                                                      ttatGGTAGTTGCTATCTTAATCTTTAAATTTAAAAAATAAAAAACAGGC‑CGAGTGCCTGTTTTTTTGTTGCTATATTGGAAATATTCGGTATTGCAGTATAACGATAATCACAGCATTGATTCGTATAAGGTTAATgtgt                                                     >  4:127229/1‑141 (MQ=255)

                                                                                      ttatGGTAGTTGCTATCTTAATCTTTAAATTTAAAAAATAAAAAACAGGC‑CGAGTGCCTGTTTTTTTGTTGCTATATTGGAAATATTCGGTATTGCAGTATAACGATAATCACAGCATTGATTCGTATAAGGTTAATgtgt                                                     <  3:443544/141‑1 (MQ=255)

                                                                                      ttatGGTAGTTGCTATCTTAATCTTTAAATTTAAAAAATAAAAAACAGGC‑CGAGTGCCTGTTTTTTTGTTGCTATATTGGAAATATTCGGTATTGCAGTATAACGATAATCACAGCATTGATTCGTATAAGGTTAATgtgt                                                     <  4:248800/141‑1 (MQ=255)

                                                                                      ttatGGTAGTTGCTATCTTAATCTTTAAATTTAAAAAATAAAAAACAGGC‑CGAGTGCCTGTTTTTTTGTTGCTATATTGGAAATATTCGGTATTGCAGTATAACGATAATCACAGCATTGATTCGTATAAGGTTAATgtgt                                                     <  2:358705/141‑1 (MQ=255)

                                                                                      ttatGGTAGTTGCTATCTTAATCTTTAAATTTAAAAAATAAAAAACAGGC‑CGAGTGCCTGTTTTTTTGTTGCTATATTGGAAATATTCGGTATTGCAGTATAACGATAATCACAGCATTGATTCGTAGAAGGTTAATgtgt                                                     <  3:104725/141‑1 (MQ=255)

                                                                                        atGGTAGTTGCTATCTTAATCTTTAAATTTAAAAAATAAAAAACAGGC‑CGAGTGCCTGTTTTTTTGTTGCTATATTGGAAATATTCGGTATTGCAGTATAACGATAATCACAGCATTGATTCGTATAAGGTTAATGTGTTg                                                   <  2:1077878/141‑1 (MQ=255)

                                                                                          ggTAGTTGCTATCTTAATCTTTAAATTTAAAAAATAAAAAACAGGC‑CGAGTGCCTGTTTTTTTGTTGCTATATTGGAAATATTCGGTATTGCAGTATAACGATAATCACAGCATTGATTCGTATAAGGTTAATGTGTTGGc                                                 >  1:790651/1‑141 (MQ=255)

                                                                                            tAGTTGCTATCTTAATCTTTAAATTTAAAAAATAAAAAACAGGC‑CGAGTGCCTGTTTTTTTGTTGCTATATTGGAAATATTCGGTATTGCAGTATAACGATAATCACAGCATTGATTCGTATAAGGTTAATGTGTTGGCgg                                               >  3:307327/1‑141 (MQ=255)

                                                                                            tAGTTGCTATCTTAATCTTTAAATTTAAAAAATAAAAAACAGGC‑CGAGTGCCTGTTTTTTTGTTGCTATATTGGAAATATTCGGTATTGCAGTATAACGATAATCACAGCATTGATTCGTATAAGGTTAATGTGTTGGCgg                                               <  1:450876/141‑1 (MQ=255)

                                                                                             aGTTGCTATCTTAATCTTTAAATTTAAAAAATAAAAAACAGGC‑CGAGTGCCTGTTTTTTTGTTGCTATATTGGAAATATTCGGTATTGCAGTATAACGATAATCACAGCATTGATTCGTATAAGGTTAATGTGTTGGCGGt                                              <  2:687734/141‑1 (MQ=255)

                                                                                             aGTTGCTATCTTAATCTTTAAATTTAAAAAATAAAAAACAGGC‑CGAGTGCCTGTTTTTTTGTTGCTATATTGGAAATATTCGGTATTGCAGTATAACGATAATCACAGCATTGATTCGTATAAGGTTAATGTGTTGGCGGt                                              >  2:659444/1‑141 (MQ=255)

                                                                                               ttGCTATCTTAATCTTTAAATTTAAAACATAAAAAACAGGC‑AGAGTGCATGTTTTTTTGTTGCTATATTGGAAATATTCGGTATTGCAGTATAACGATAATCACAGCATTGATTCGTATAAGGATAATCTGTTggagatct                                            >  2:40680/1‑135 (MQ=255)

                                                                                                tGCTATCTTAATCTTTAAATTTAAAAAATAAAAAACAGGC‑CGAGTGCCTGTTTTTTTGTTGCTATATTGGAAATATTCGGTATTGCAGTATAACGATAATCACAGCATTGATTCGTATAAGGTTAATGTGTTGACGGTTTg                                           >  2:136868/1‑141 (MQ=255)

                                                                                                      cTTAATCTTTAAATTTAAAAAATAAAAAACAGGC‑CGAGTGCCTGTTTTTTTGTTGCTATATTGGAAATATTCGGTATTGCAGTATAACGATAATCACAGCATTGATTCGTATAAGGTTAATGTGTTGGCGGTTTGCCTCgg                                     <  4:448751/141‑1 (MQ=255)

                                                                                                      cTTAATATCTAAATTTAAAAAATAAAAAACAGGC‑CGAGTGCCTGTTTTTTTGTTGCTATATTGGAAATATTCGGTATTGCAGTATAACGATAATCACAGCATTGATTCGTATAAGGTTAATGTGTTGGCGGTTTGCCTCgg                                     <  3:300131/141‑1 (MQ=255)

                                                                                                          aTCTTTAAATTTAAAAAATAAAAAACAGGC‑CGAGTGCCTGTTTTTTTGTTGCTATATTGGAAATATTCGGTATTGCAGTATAACGATAATCACAGCATTGATTCGTATAAGGTTAATGTGTTGGCGGTTTGCCTCGGCAtg                                 <  2:509428/141‑1 (MQ=255)

                                                                                                           tCTTTAAATTTAAAAAATAAAAAACAGGC‑CGAGTGCCTGTTTTTTTGTTGCTATATTGGAAATATTCGGTATTGCAGTATAACGATAATCACAGCATTGATTCGTATAAGGTTAATGTGTTGGCGGTTTGCCTCGGCAtgt                                <  1:591415/141‑1 (MQ=255)

                                                                                                              ttaaatttaaaAAATAAAAAACAGGC‑CGAGTGCCTGTTTTTTTGTTGCTATATTGGAAATATTCGGTATTGCAGTATAACGATAATCACAGCATTGATTCGTATAAGGTTAATGTGTTGGCGGTTTGCCTCGGCATGTGaa                             >  4:424032/1‑141 (MQ=255)

                                                                                                               taaatttaaaAAATAAAAAACAGGC‑CGAGTGCCTGTTTTTTTGTTGCTATATTGGAAATATTCGGTATTGCAGTATAACGATAATCACAGCATTGATTCGTATNANGNTAATGTGTTGGCGGTTTGCCTCGGCATGTGAAc                            <  1:397759/141‑1 (MQ=255)

                                                                                                                     taaaaaataaaaaaCAGGC‑CGAGTGCCTGTTTTTTTGTTGCTATATTGGAAATATTCGGTATTGCAGTATAACGATAATCACAGCATTGATTCGTATAAGGTTAATGTGTTGGCGGTTTGCCTCGGCATGTGAACTTAACg                      >  3:306211/1‑141 (MQ=255)

                                                                                                                           ataaaaaaCAGGC‑CGGGTgcctgttttttattttttaaatttaaagattaagatagcaactatcatgatataagcaccttgtgctatcaatggttcataacttggaaaaaagcccaaccagttaatcgttgggaatccttc                <  4:74870‑M2/141‑124 (MQ=255)

                                                                                                                             aaaaaaCAGGC‑CGAGTGCCTGTTTTTTTGTTGCTATATTGGAAATATTCGGTATTGCAGTATAACGATAATCACAGCATTGATTCGTATAAGGTTAATGTGTTGGCGGTTTGCCTCGGCATGTGAACTTAACGATGAACAt              >  2:185579/1‑141 (MQ=255)

                                                                                                                              aaaaaCAGGC‑CGAGTGCCTGTTTTTTTGTTGCTATATTGGAAATATTCGGTATTGCAGTATAACGCTAATCACAGCATTGATTCGTATAAGGTTAATGTGTTGGCGGTTTGCCTCGGCATGTGAACTTAACGATGAACATa             >  4:224776/1‑141 (MQ=255)

                                                                                                                               aaaaCAGGC‑CGAGTGCCTGTTTTTTTGTTGCTATATTGGAAATATTCGGTATTGCAGTATAACGATAATCACAGCATTGATTCGTATAAGGTTAATGTGTTGGCGGTTTGCCTCGGCATGTGAACTTAACGATGAACATAc            >  2:186717/1‑141 (MQ=255)

                                                                                                                                aaaCAGGC‑CGAGTGCCTGTTTTTTTGTTGCTATATTGGAAATATTCGGTATTGCAGTATAACGATAATCACAGCATTGATTCGTATAAGGTTAATGTGTTGGCGGTTTGCCTCGGCATGTGAACTTAACGATGAACATACt           <  2:649341/141‑1 (MQ=255)

                                                                                                                                aaaCAGGC‑CGAGTGCCTGTTTTTTTGTTGCTATATTGGAAATATTCGGTATTGCAGTATAACGATAATCACAGCATTGATTCGTATAAGGTTAATGTGTTGGCGGTTTGCCTCGGCATGTGAACTTAACGATGAACATACt           <  2:298077/141‑1 (MQ=255)

                                                                                                                                aaaCAGGC‑CGAGTGCCTGTTTTTTTGTTGCTATATTGGAAATATTCGGTATTGCAGTATAACGATAATCACAGCATTGATTCGTATAAGGTTAATGTGTTGGCGGTTTGCCTCGGCATGTGAACTTAAAGATGAACATACt           >  4:367548/1‑141 (MQ=255)

                                                                                                                                 aaCAGGC‑CGAGTGCCTGTTTTTTTGTTGCTATATTGGAAATATTCGGTATTGCAGTATAACGCTAATCACAGCATTGATTCGTATAAGGTTAATGTGTTGGCGGTTTGCCTCGGCATGTGAACTTAACGATGAACATACTg          >  3:214849/1‑141 (MQ=255)

                                                                                                                                  aCAGGC‑CGAGTGCCTGTTTTTTTGTTGCTATATTGGAAATATTCGGTATTGCAGTATAACGATAATCACAGCATTGATTCGTATAAGGTTAATGTGTTGGCGGTTTGCCTCGGCATGTGCACTTAACGATGAACATACTGa         >  1:970015/1‑141 (MQ=255)

                                                                                                                                  aCAGGC‑CGAGTGCCTGTTTTTTTGTTGCTATATTGGAAATATTCGGTATTGCAGTATAACGATAATCACAGCATTGATTCGTATAAGGTTAATGTGTTGGCGGTTTGCCTCGGCATGTGAACTTAACGATGAACATACTGa         <  1:714148/141‑1 (MQ=255)

                                                                                                                                  aCAGGC‑CGAGTGCCTGTTTTTTTGTTGCTATATTGGAAATATTCGGTATTGCAGTATAACGATAATCACAGCATTGATTCGTATAAGGTTAATGTGTTGGCGGTTTGCCTCGGCATGTGAACTTAACGATGAACATACTGa         <  2:913476/141‑1 (MQ=255)

                                                                                                                                   cAGGC‑CGAGTGCCTGTTTTTTTGTTGCTATATTGGAAATATTCGGTATTGCAGTATAACGATCATCACAGCATTGATTCGTATAAGGTTAATGTGTTGGCGGTTTGCCTCGGCATGTGAACTTAACGATGAACATACTGaa        <  2:573923/141‑1 (MQ=255)

                                                                                                                                   cAGGC‑CGAGTGCCTGTTTTTTTGTTGCTATATTGGAAATATTCGGTATTGCAGTATAACGATAATCACAGCATTGATTCGTATAAGGTTAATGTGTTGGCGGTTTGCCTCGGCATGTGAACTTAACGATGAACATACTGaa        <  2:516531/141‑1 (MQ=255)

                                                                                                                                     ggC‑CGAGTGCCTGTTTTTTTGTTGCTATATTGGAAATATTCGGTATTGCAGTATAACGATAATCACAGCATTGATTCGTATAAGGTTAATGTGTTGGCGGTTTGCCTCGGCATGTGAACTTAACGATGAACATACTGAACt      >  3:250333/1‑141 (MQ=255)

                                                                                                                                       c‑cGAGTgcctgttttttattttttaaatttaaagattaagatagcaactaccataatataagcaccttgtgctatcaatggttcataacttggataaaagcccaaccagttaatcgttgggaatccttcaataacatgtct    <  2:778854‑M2/141‑136 (MQ=255)

                                                                                                                                         cGAGTGCCTGTTTTTTTGTTGCTATATTGGAAATATTCGGTATTGCAGTATAACGATAATCACAGCATTGATTCGTATAAGGTTAATGTGTTGGCGGTTTGCCTCGGCATGTGAACTTAACGATGAACATACTGAACTCaa   >  2:805121/1‑141 (MQ=255)

                                                                                                                                          gAGTGCCTGTTTTTTTGTTGCTATATTGGAAATATTCGGTATTGCAGTATAACGATAATCACAGCATTGATTCGTATAAGGTTAATGTGTTGGCGGTTTGCCTCGGCATGTGAACTTAACGATGAACATACTGAACTCaaa  <  1:583460/141‑1 (MQ=255)

                                                                                                                                          gAGTGCCTGTTTTTTTGTTGCTATATTGGAAATATTCGGTATTGCAGTATAACGATAATCACAGCATTGATTCGTATAAGGTTAATGTGTTGGCGGTTTGCCTCGGCATGTGAACTTAACGATGAACATACTGAACTCaaa  <  1:387343/141‑1 (MQ=255)

AAGACATGTTATTGAAGGATTCCCAACGATTAACTGGTTGGGCTTTTATCCAAGTTATGAACCATTGATAGCACAAGGTGCTTATATTATGGTAGTTGCTATCTTAATCTTTAAATTTAAAAAATAAAAAACAGGC‑CGAGTGCCTGTTTTTTTGTTGCTATATTGGAAATATTCGGTATTGCAGTATAACGATAATCACAGCATTGATTCGTATAAGGTTAATGTGTTGGCGGTTTGCCTCGGCATGTGAACTTAACGATGAACATACTGAACTCAAA  >  USA300TCH1516_ALE/399566‑399843

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 12 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.