| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | USA300TCH1516_ALE | 2,559,841 | C→A | 8.5% | intergenic (+35/+88) | bcr_2 → / ← USA300HOU_RS13190 | Bicyclomycin resistance protein/hypothetical protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | USA300TCH1516_ALE | 2,559,841 | 0 | C | A | 8.5% | 400.6 / 15.5 | 123 | intergenic (+35/+88) | bcr_2/USA300HOU_RS13190 | Bicyclomycin resistance protein/hypothetical protein |
| Reads supporting (aligned to +/- strand): ref base C (50/62); new base A (6/5); total (56/67) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 5.45e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 131 total aligned reads displayed.
TTTAATACATCACCATATATGATTATTATCTTCATTACAGCCATTCTATTAGTCAGTCTACAAATCATTTACTTTAAAATGATTAAAAAGCAACATGTCGCATAACACTTCAACAT‑AATTAGAACCCTAGCAAAGATATCTATCTTTGTCAGGGTTCTTCTTTATGAATTATGAGATCGAATCTTCAACTAAAATTACGCCTTCATAGCAAGGACATTTCTATTCAATCACCCTTTAACAGGCATCCAAATTTCTGTAATATATTTTTCACTTGTAGT > USA300TCH1516_ALE/2559702‑2559979 | tttAATACATCACCATATATGATTATTATCTTCATTACAGCCATTCTATTAGTCAGTCTACAAATCATTTACTTTAAAATGATTAAAAAGCAACATGTCGCATAACACTTCAACAT‑AATTAGAACCCTAGCAAAGAtatct < 2:35980/141‑1 (MQ=255) ttAATACATCACCATATATGATTATTATCTTCATTACAGCCATTCTATTAGTCAGTCTACAAATCATTTACTTTAAAATGATTAAAAAGCAACATGTCGCATAACACTTCAACAT‑AATTAGAACCCTAGCAAAGAtatcta < 1:939555/141‑1 (MQ=255) ttAATACATCACCATATATGATTATTATCTTCATTACAGCCATTCTATTAGTCAGTCTACAAATCATTTACTTTAAAATGATTAAAAAGCAACATGTCGCATAACACTTCAACAT‑AATTAGAACCCTAGCAAAGAtatcta > 4:127013/1‑141 (MQ=255) ttAATACATCACCATATATGATTATTATCTTCATTACAGCCATTCTATTAGTCAGTCTACAAATCATTTACTTTAAAATGATTAAAAAGCAACATGTCGCATAACACTTCAACAT‑AATTAGAACCCTAGCAAAGAtatcta > 1:31850/1‑141 (MQ=255) tAATACATCACCATATATGATTATTATCTTCATTACAGCCATTCTATTAGTCAGTCTACAAATCATTTACTTTAAAATGATTAAAAAGCAACATGTCGCATAACACTTCAACAT‑AATTAGAACCCTAGCAAAGAtatctat < 2:244572/141‑1 (MQ=255) aaTACATCACCATATATGATTATTATCTTCATTACAGCCATTCTATTAGTCAGTCTACAAATCATTTACTTTAAAATGATTAAAAAGCAACATGTCGCATAACACTTCAACAT‑AATTAGAACCCTAGCAAAGAtatctatc > 2:339998/1‑141 (MQ=255) aCATCACCATATATGATTATTATCTTCATTACAGCCTTTCTATTAGTCAGTCTACAAATCATTTACTTTAAAATGATTAAATAGCAACATGTCGCATAACACTTCAACAT‑AATTAGAACCCTATCAAAGATATCTATCttt > 1:1014644/1‑141 (MQ=255) cATCACCATATATGATTATTATCTTCATTACAGCCATTCTATTAGTCAGTCTACAAATCATTTACTTTAAAATGATTAAAAAGCAACATGTCGCATAACACTTCAACAT‑AATTAGAACCCTAGCAAAGATATCTATCTTTg < 1:627455/141‑1 (MQ=255) cACCATATATGATTATTATCTTCATTACAGCCATTCTATTAGTCAGTCTACAAATCATTTACTTTAAAATGATTAAAAAGCAACATGTCGCATAACACTTCAACAT‑AATTAGAACCCTAGCAAAGATATCTATCTTTGTCa > 1:507135/1‑141 (MQ=255) cACCATATATGATTATTATCTTCATTACAGCCATTCTATTAGTCAGTCTACAAATCATTTACTTTAAAATGATTAAAAAGCAACATGTCGCATAACACTTCAACAT‑AATTAGAACCCTAGCAAAGATATCTATCTTTGTCa > 2:933653/1‑141 (MQ=255) cATATATGATTATTATCTTCATTACAGCCATTCTATTAGTCAGTCTACAAATCATTTACTTTAAAATGATTAAAAAGCAACATGTCGCATAACACTTCAACATAAAGAAGAACTCTGACAAAGATAGATATCTTTgctagg < 4:384784/141‑6 (MQ=37) cATATATGATTATTATCTTCATTACAGCCATTCTATTAGTCAGTCTACAAATCATTTACTTTAAAATGATTAAAAAGCAACATGTCGCATAACACTTCAACAT‑AATTAGAACCCTGACAAAGATAGATATCTTTgctaggg < 1:43213/141‑7 (MQ=39) cATATATGATTATTATCTTCATTACAGCCATTCTATTAGTCAGTCTACAAATCATTTACTTTAAAATGATTAAAAAGCAACATGTCGCATAACACTTCAACAT‑AATTAGAACCCTAGCAAAGATATCTATCTTTGTCAggg > 2:990098/1‑141 (MQ=255) cATATATGATTATTATCTTCATTACAGCCATTCTATTAGTCAGTCTACAAATCATTTACTTTAAAATGATTAAAAAGCAACATGTCGCATAACACTTCAACAT‑AATTAGAACCCTAGCAAAGATATCTATCTTTGTCAggg < 3:87745/141‑1 (MQ=255) cATATATGATTATTATCGTCATTACAGCCATTCTATTAGTCAGTCTAAAAATGATTTACTTTAAAATGATTAAAAAGCAACATGTCGCATAACACTTCAACAT‑AATTAGAACCCTAGCAAAGATATCTATCTTTGTCAggg < 2:821461/141‑1 (MQ=255) tatatGATTATTATCTTCATTACAGCCATTCTATTAGTCAGTCTACAAATCATTTACTTTAAAATGATTAAAAAGCAACATGTCGCATAACACTTCAACAT‑AATTAGAACCCTAGCAAAGATATCTATCTTTGTCAGGGtt < 2:221980/141‑1 (MQ=255) atatGATTATTATCTTCATTACAGCCATTCTATTAGTCATTCTACAAATCATTTACTTTAAAATGATTAAAAAGCAACATGTCGCATAACACTTCAACAT‑AATTAGAACCCTAGCAAAGATATCTATCTTTGTCAGGGttc < 3:452545/141‑1 (MQ=255) atatGATTATTATCTTCATTACAGCCATTCTATTAGTCAGTCTACAAATCATTTACTTTAAAATGATTAAAAAGCAACATGTCGCATAACACTTCAACAT‑AATTAGAACCCTGACAAAGATAGATATCTTTGCTAGGGttc < 2:150905/141‑1 (MQ=38) atatGATTATTATCTTCATTACAGCCATTCTATTAGTCAGTCTACAAATCATTTACTTTAAAATGATTAAAAAGCAACATGTCGCATAACACTTCAACAT‑AATTAGAACCCTAGCAAAGATATCTATCTTTGTCAGGGttc < 1:882930/141‑1 (MQ=255) tatGATTATTATCTTCATTACAGCCATTCTATTAGTCAGTCTACAAATCATTTACTTTAAAATGATTAAAAAGCAACATGTCGCATAACACTTCAACAT‑AATTAGAACCCTAGCAAAGATCTCTAACTTTGTCAGGGttct > 1:58897/1‑141 (MQ=255) tatGATTATTATCTTCATTACAGCCATTCTATTAGTCAGTCTACAAATCATTTACTTTAAAATGATTAAAAAGCAACATGTCGCATAACACTTCAACAT‑AATTAGAACCCTAGCAAAGATATCTATCTTTGTCAGGGttct < 2:792960/141‑1 (MQ=255) tatGATTATTATCTTCATTACAGCCATTCTATTAGTCAGTCTACAAATCATTTACTTTAAAATGATTAAAAAGCAACATGTCGCATAACACTTCAACAT‑AATTAGAACCCTAGCAAAGATATCTATCTTTGTCAGGGttct < 2:351839/141‑1 (MQ=255) atGATTATTATCTTCATTACAGCCATTCTATTAGTCAGTCTACAAATCATTTACTTTAAAATGATTAAAAAGCAACATGTCGCATAACACTTCAACAT‑AATTAGAACCCTAGCAAAGATATCTATCTTTGTCAGGGttctt > 2:710753/1‑141 (MQ=255) tattatCTTCATTACAGCCATTCTATTAGTCAGTCTACAAATCATTTACTTTAAAATGATTAAAAAGCAACATGTCGCATAACACTTCAACAT‑AATTAGAACCCTAGCAAAGATATCTATCTTTGTCAGGGTTCTTCTTTa < 3:176700/141‑1 (MQ=255) cTTCATTACAGCCATTCTATTAGTCAGTCTACAAATCATTTACTTTAAAATGATTAAAAAGCAACATGTCGCATAACACTTCAACAT‑AATTAGAACCCTAGCAAAGATATCTATCTTTGTCAGGGTTCTTCTTTATGAAtt > 1:1049215/1‑141 (MQ=255) tACAGCCATTCTATTAGTCAGTCTACAAATCATTTACTTTAAAATGATTAAAAAGCAACATGTCGCATAACACTTCAACAT‑AATTAGAACCCTAGCAAAGATATCTATCTTTGTCAGGGTTCTTCTTTATGAATTATgaga < 2:494361/141‑1 (MQ=255) tACAGCCATTCTATTAGTCAGTCTACAAATCATTTACTTTAAAATGATTAAAAAGCAACATGTCGCATAACACTTCAACAT‑AATTAGAACCCTAGCAAAGATATCTATCTTTGTCAGGGTTCTTCTTTATGAATTATgaga < 3:236682/141‑1 (MQ=255) tACAGCCATTCTATTAGTCAGTCTACAAATCATTTACTTTAAAATGATTAAAAAGCAACATGTCGCATAACACTTCAACAT‑AATTAGAACCCTAGCAAAGATATCTATCTTTGTCAGGGTTCTTCTTTATGAATTATgaga < 4:286180/141‑1 (MQ=255) aGCCATTCTATTAGTCAGTCTACAAATCATTTACTTTAAAATGATTAAAAAGCAACATGTCGCATAACACTTCAACAT‑AATTAGAACCCTAGCAAAGATATCTATCTTTGTCAGGGTTCTTCTTTATGAATTATGAGATCg > 3:13893/1‑141 (MQ=255) aGCCATTCTATTAGTCAGTCTACAAATCATTTACTTTAAAATGATTAAAAAGCAACATGTCGCATAACACTTCAACAT‑AATTAGAACCCTAGCAAAGATATCTATCTTTGTCAGGGTTCTTCTTTATGAATTATGAGATCg > 3:168462/1‑141 (MQ=255) ccATTCTATTAGTCAGTCTACAAATCATTTACTTTAAAATGATTAAAAAGCAACATGTCGCATAACACTTCAACAT‑AATTAGAACCCTAGCAAAGATATCTATCTTTGTCAGGGTTCTTCTTTATGAATTATGAGATCGaa > 1:706415/1‑141 (MQ=255) ttCTATTAGTCAGTCTACAAATCATTTACTTTAAAATGATTAAAAAGCAACATGTCGCATAACACTTCAACAT‑AATTAGAACCCTAGCAAAGATATCTATCTTTGTCGGGGTTCTTCTTTATGAATTATGAAATCCAATCt > 1:194481/1‑141 (MQ=255) tATTAGTCAGTCTACAAATCATTTACTTTAAAATGATTAAAAAGCAACATGTCGCATAACACTTCAACAT‑AATTAGAACCCTAGCAAAGATATCTATCTTTGTCAGGGTTCTTCTTTATGAATTATGAGATCGAATCTTCa > 2:944259/1‑141 (MQ=255) tATTAGTCAGTCTACAAATCATTTACTTTAAAATGATTAAAAAGCAACATGTCGCATAACACTTCAACAT‑AATTAGAACCCTAGCAAAGATATCTATCTTTGTCAGGGTTCTTCTTTATGAATTATGAGATCGAATCTTCa < 1:164267/141‑1 (MQ=255) ttAGTCCGTCTACAAAACATTTACTTTAAAATGATTAAAAAGCAACATGTCGCATAACACTTCAACAT‑AATTAGAACCCTAGCAAAGATATCTATCTTTGTCAGGGTTCTTCTTTATGAATTATGAGATCGAATCTTCAAc < 2:130118/141‑1 (MQ=255) ttAGTCAGTCTACAAATCATTTACTTTAAAATGATTAAAAAGCAACATGTCGCATAACACTTCAACAT‑AATTAGAACCCTAGCAAAGATATCTATCTTTGTCAGGGTTCTTCTTTATGAATTATGAGATCGAATCTTCAAc < 1:1057831/141‑1 (MQ=255) ttAGTCAGTCTACAAATCATTTACTTTAAAATGATTAAAAAGCAACATGTCGCATAACACTTCAACAT‑AATTAGAACCCTAGCAAAGATATCTATCTTTGTCAGGGTTCTTCTTTATGAATTATGAGATCGAATCTTCAAc < 3:223662/141‑1 (MQ=255) gtcagtcTACAAATCATTTACTTTAAAATGATTAAAAAGCAACATGTCGCATAACACTTCAACAT‑AATTAGAACCCTAGCAAAGATATCTATCTTTGTCAGGGTTCTTCTTTATGAATTATGAGATCGAATCTTCAACTaa > 1:535117/1‑141 (MQ=255) gtcagtcTACAAATCATTTACTTTAAAATGATTAAAAAGCAACATGTCGCATAACACTTCAACAT‑AATTAGAACCCTAGCAAAGATATCTATCTTTGTCAGGGTTCTTCTTTATGAATTATGAGATCGAATCTTCAACTaa > 2:532994/1‑141 (MQ=255) tcagtcTACAAATCATTTACTTTAAAATGATTAAAAAGCAACATGTCGCATAACACTTCAACAT‑AATTAGAACCCTAGCAAAGATATCTATCTTTGTCAGGGTTCTTCTTTATGAATTATGAGATCGAATCTTCAACTaaa > 1:714611/1‑141 (MQ=255) gtcTACAAATCATTTACTTTAAAATGATTAAAAAGCAACATGTCGCATAACACTTCAACAT‑AATTAGAACCCTAGCAAAGATATCTATCTTTGTCAGGGTTCTTCTTTATGAATTATGAGATCGAATCTTCAACTAAAAtt < 1:685775/141‑1 (MQ=255) tcTACAAATCATTTACTTTAAAATGATTAAAAAGCAACATGTCGCATAACACTTCAACAT‑AATTAGAACCCTAGCAAAGATATCTATCTTTGTCAGGGTTCTTCTTTATGAATTATGAGATCGAATCTTCAACTAAAATTa > 2:223839/1‑141 (MQ=255) tcTACAAATCATTTACTTTAAAATGATTAAAAAGCAACATGTCGCATAACACTTCAACAT‑AATTAGAACCCTAGCAAAGATATCTATCTTTGTCAGGGTTCTTCTTTATGAATTATGAGATCGAATCTTCAACTAAAATTa > 3:92644/1‑141 (MQ=255) tcTACAAATCATTTACTTTAAAATGATTAAAAAGCAACATGTCGCATAACACTTCAACAT‑AATTAGAACCCTAGCAAAGATATCTATCTTTGTCAGGGTTCTTCTTTATGAATTATGAGATCGAATCTTCAACTAAAATTa < 1:390632/141‑1 (MQ=255) aCAAATCATTTACTTTAAAATGATTAAAAAGCAACATGTCGCATAACACTTCAACAT‑AATTAGAACCCTAGCAAAGATATCTATCTTTGTCAGGGTTCTTCTTTATGAATTATGAGATCGAATCTTCAACTAAAATTACGc < 1:245040/141‑1 (MQ=255) aCAAATCATTTACTTTAAAATGATTAAAAAGCAACATGTCGCATAACACTTCAACAT‑AATTAGAACCCTAGCAAAGATATCTATCTTTGTCAGGGTTCTTCTTTATGAATTATGAGATCGAATCTTCAACTAAAATTACGc > 3:160151/1‑141 (MQ=255) cAAATCATTTACTTTAAAATGATTAAAAAGCAACATGTCGCATAACACTTCAACAT‑AATTAGAACCCTAGCAAAGATATCTATCTTTGTCAGGGTTCTTCTTTATGAATTATGAGATCGAATCTTCAACTAAAATTACGcc > 2:838504/1‑141 (MQ=255) aaTCATTTACTTTAAAATGATTAAAAAGCAACATGTCGCATAACACTTCAACAT‑AATTAGAACCCTAGCAAAGATATCTATCTTTGTCAGGGTTCTTCTTTATGAATTATGAGATCGAATCTTCAACTAAAATTACGCCtt < 1:419774/141‑1 (MQ=255) aaTCATTTACTTTAAAATGATTAAAAAGCAACATGTCGCATAACACTTCAACAT‑AATTAGAACCCTAGCAAAGATATCTATCTTTGTCAGGGTTCTTCTTTATGAATTATGAGATCGAATCTTCAACTAAAATTACGCCtt < 2:836358/141‑1 (MQ=255) aTCATTTACTTTAAAATGATTAAAAAGCAACATGTCGCATAACACTTCAACAT‑AATTAGAACCCTAGCAAAGATATCTATCTTTGTCAGGGTTCTTCTTTATGAATTATGAGATCGAATCTTCAACTAAAATTACGCCTTc < 1:295063/141‑1 (MQ=255) tttACTTTAAAATGATTAAAAAGCAACATGTCGCATAACACTTCAACAT‑AATTAGAACCCTAGCAAAGATATCTATCTTTGTCAGGGTTCTTCTTTATGAATTATGAGATCGAATCTTCAACTAAAATTACGCCTTCATAg > 4:410138/1‑141 (MQ=255) tACTTTAAAATGATTAAAAAGCAACATGTCGCATAACACTTCAACAT‑AATTAGAACCCTAGCAAAGATATCTATCTTTGTCAGGGTTCTTCTTTATGAATTATGAGATCGAATCTTCAACTAAAATTACGCCTTCATAGCa > 3:399500/1‑141 (MQ=255) tttAAAATGATTAAAAAGCAACATGTCGCATAACACTTCAACAT‑AATTAGAACCCTAGCAAAGATATCTATCTTTGTCAGGGTTCTTCTTTATGAATTATGAGATCGAATCTTCAACTAAAATTACGCCTTCATAGCAAgg < 1:842232/141‑1 (MQ=255) tttAAAATGATTAAAAAGCAACATGTCGCATAACACTTCAACAT‑AATTAGAACCCTAGCAAAGATATCTATCTTTGTCAGGGTTCTTCTTTATGAATTATGAGATCGAATCTTCAACTAAAATTACGCCTTCATAGCAAgg < 3:305002/141‑1 (MQ=255) tatAAAATGATTAAAAAGCAACATGTCGCATAACACTTCAACAT‑AAATAGAACCCTAGCAAAGATGTCTATCTTTGTCAGGGTTCTTCTTTATGAATTATGAGAACGAATCTTCAACTAAAATTACGCCTACAAAACaaag < 2:23727/139‑3 (MQ=255) tAAAAAGATTAAAAACCAACATGTCACATAACACTACAACAT‑TATTAGACCCCTAGCAAAGATATCTATCTTTGTCAGGTTTCTTCTTTATGAATTATAAGATCGAATCTTCAACTAAAATTACGCCTTCCTAGCAAAGaa < 4:271034/141‑2 (MQ=255) aaaaTGATTAAAAAGCAACATGTCGCATAACACTTCAACAT‑AATTAGAACCCTAGCAAAGATATCTATCTTTGTCAGGGTTCTTCTTTATGAATTATGAGATCGAATCTTCAACTAAAATTACGCCTTCATAGCAAGGACa > 1:789052/1‑141 (MQ=255) aaaTGATTAAAAAGCAACATGTCGCATAACACTTCAACAT‑AATTAGAACCCTAGCAAAGATATCTATCTTTGTCAGGGTTCTTCTTTATGAATTATGAGATCGAATCTTCAACTAAAATTACGCCTTCATAGCAAGGACAt < 2:716485/141‑1 (MQ=255) aaaTGATTAAAAAGCAACATGTCGCATAACACTTCAACAT‑AATTAGAACCCTAGCAAAGATATCTATCTTTGTCAGGGTTCTTCTTTATGAATTATGAGATCGAATCTTCAACTAAAATTACGCCTTCATAGCAAGGACAt > 1:463095/1‑141 (MQ=255) aaaTGATTAAAAAGCAACATGTCGCATAACACTTCAACAT‑AATTAGAACCCTAGCAAAGATATCTATCTTTGTCAGGGTTCTTCTTTATGAATTATGACATCGAATCTTCAACTAAAATTACGCCTTCATAGCAAGGACAt < 1:1063207/141‑1 (MQ=255) aaTGATTAAAAAGCAACATGTCGCATAACACTTCAACAT‑AATTAGAACCCTAGCAAAGATATCTATCTTTGTCAGGGTTCTTCTTTATGAATTATGAGATCGAATCTTCATCCAAAATTACGCCTTCATAGCAAGGACAtt < 2:321431/141‑1 (MQ=255) aTTAAAAAGCAACATGTCGCATAACACTTCAACAT‑AATTAGAACCCTAGCAAAGATATCTATCTTTGTCAGGGTTCTTCTTTATGAATTATGAGATCGAATCTTCAACTAAAATTACGCCTTCATAGCAAGGACATTTCTa > 3:300156/1‑141 (MQ=255) aaaaGCAACATGTCGCATAACACTTCAACAT‑AACTAGAACCCTAGCAAAGATATCTATCTTTGTCAGGGTGCTTCTTTATGAATTAAGAGAGCGAATCTTCAACTAAAATTACGCCTTCATGGTGAGGACATTTCTATTCa < 2:965093/141‑1 (MQ=255) aaaaACAACATGTCGCATAACACTTCAACAT‑AATTAGAACCCTAGCAAAGATATCTATCTTTGTCAGGGTTCTTCTTTATGAATTATGAGATCGAATCTTCAACTAAAATTACGACTTCATAGCAAGGACATTTCTATTCa < 2:652164/141‑1 (MQ=255) cAACATGTCGCATAACACTTCAACAT‑AATTAGAACCCTAGCAAAGATATCTATCTTTGTCAGGGTTCTTCTTTATGAATTATGAGATCGAATCTTCAACTAAAATTACGCCTTCATAGCAAGGACATTTCTATTCAATCAc > 4:23195/1‑141 (MQ=255) aaCATGTCGCATAACACTTCAACAT‑AATTAGTACCCTAGCAAAGATATCTATCTTTGTCAGGGTTCTTCTTTATGAATTATGAGATCGAATCTTCAACTAAAATTACGCCTTCATAGCTAGGACATTTCTATTCAATCAcg < 2:1083175/141‑2 (MQ=255) aaCATGTCGCATAACACTTCAACAT‑AATTAGAACCCTAGCAAAGATATCTATCTTTGTCAGGGTTCTTCTTTATGAATTATGAGATCGAATCTTCAACTAAAATTACGCCTTCATAGCAAGGACATTTCTATTCAATCAcc > 3:83329/1‑141 (MQ=255) aCATGTCGCATAACACTTCAACAT‑AATTAGAACCCTAGCAAAGATATCTATCTTTGTCAGGGTTCTTCTTTATGAATTATGAGATCGAATCTTCAACTAAAATTACGCCTTCATAGCAAGGACATTTCTATTCAATCAccc > 2:976977/1‑141 (MQ=255) aCATGTCGCATAACACTTCAACAT‑AATTAGAACCCTAGCAAAGATATCTATCTTTGTCAGGGTTCTTCTTTATGAATTATGAGATCGAATCTTCAACTAAAATTACGCCTTCATAGCAAGGACATTTCTATTCAATCAccc > 1:305915/1‑141 (MQ=255) cATAACACTTCAACAT‑AATTAGAACCCTAGCAAAGATATCTATCTTTGTCAGGGTTCTTCTTTATGAATTATGAGATCGAATCTTCAACTAAAATTACGCCTTCATAGCAAGGACATTTCTATTCAATCACCCTTTAACAg < 2:1010271/141‑1 (MQ=255) tAACACTTCAACAT‑AATTAGAACCCTAGCAAAGATATCTATCTTTGTCAGGGTTCTTCTTTATGAATTATGAGATCGAATCTTCAACTAAAATTACGCCTTCATAGCAAGGACATTTCTATTCAATCACCCTTTAACAGGc < 4:312362/141‑1 (MQ=255) aaCACTTCAACAT‑AATTAGAACCCTAGCAAAGATATCTATCTTTGTCAGGGTTCTTCTTTATGAATTATGAGATCGAATCTTCAACTAAAATTACGCCTTCATAGCAAGGACATTTCTATTCAATCACCCTTTAACAGGCa > 3:410522/1‑141 (MQ=255) acacTTCAACAT‑AATTAGAACCCTAGCAAAGATATCTATCTTTGTCGGGGTTCTTCTTTATGAATTATGAAATCCAATCTTCAACTAAAATTACGCCTTCATATCAAGTACATTTCTATTCAATCACCCTTTAACAGGCAt > 1:924064/1‑141 (MQ=255) cacTTCAACAT‑AATTAGAACCCTAGCAAAGATATCTATCTTTGTCAGGGTTCTTCTTTATGAATTATGAGATCGAATCTTCAACTAAAATTACGCCTTCATAGCAAGGACATTTCTATTCAATCACCCTTTAACAGGCATc < 2:585800/141‑1 (MQ=255) cacTTCAACAT‑AATTAGAACCCTAGCAAAGATATCTATCTTTGTCAGGGTTCTTCTTTATGAATTATGAGATCGAATCTTCAACTAAAATTACGCCTTCATAGCAAGGACATTTCTATTCAATCACCCTTTAACAGGCATc < 1:628843/141‑1 (MQ=255) cTTCAACAT‑AATTAGAACCCTAGCAAAGATATCTATCTTTGTCAGGGTTCTTCTTTATGAATTATGAGATCGAATCTTCAACTAAAATTACGCCTTCATAGCAAGGACATTTCTATTCAATCACCCTTTAACAGGCATCCa > 4:117044/1‑141 (MQ=255) tCAACAT‑AATTAGAACCCTAGCAAAGATATCTATCTTTGTCAGGGTTCTTCTTTATGAATTATGAGATCGAATCTTCAACTAAAATTACGCCTTCATAGCAAGGACATTTCTATTCAATCACCCTTTAACAGGCATCCaaa < 1:55108/141‑1 (MQ=255) aaTTAGAACCCTAGCAAAGATATCTATCTTTGTCAGGGTTCTTCTTTATGAATTATGAGATCGAATCTTCAACTAAAATTACGCCTTCATAGCAAGGACATTTCTATTCAATCACCCTTTAACAGGCATCCAAATTTCTGt < 2:285802/141‑1 (MQ=255) aTTAGAACCCTAGCAAAGATATCTATCTTTGTCAGGGTTCTTCTTTATGAATTATGAGATCGAATCTTCAACTAAAATTACGCCTTCATAGCAAGGACATTTCTATTCAATCACCCTTTAACAGGCATCCAAATTTCTGTa > 3:263315/1‑141 (MQ=255) aTTAGAACCCTAGCAAAGATATCTATCTTTGTCAGGGTTCTACTTTATGAATTATGAGATCGAATCTTCAACTAAAATTACGCCTTCATAGCAAGGACATTTCTATTCAATCACCCTTTAACAGGCAACCAAATTTCtata > 2:723263/1‑141 (MQ=255) ttAGAACCCTAGCAAAGATATCTATCTTTGTCAGGGTTCTTCTTTATGAATTATGAGATCGAATCTTCAACTAAAATTACGCCTTCATAGCAAGGACATTTCTATTCAATCACCCTTTAACAGGCATCCAAATTTCTGTaa > 2:710280/1‑141 (MQ=255) ttAGAACCCTAGCAAAGATATCTATCTTTGTCAGGGTTCTTCTTTATGAATTATGAGATCGAATCTTCAACTAAAATTACGCCTTCATAGCAAGGACATTTCTATTCAATCACCCTTTAACAGGCATCCAAATTTCTGTaa < 4:227239/141‑1 (MQ=255) ttAGAACCCTAGCAAAGATATCTATCTTTGTCAGGGTTCTTCTTTATGAATTATGAGATCGAATCTTCAACTAAAATTACGCCTTCATAGCAAGGACATTTCTATTCAATCACCCTTTAACAGGCATCCAAATTTCTGTaa < 4:227231/141‑1 (MQ=255) tAGAACCCTAGCAAAGATATCTATCTTTGTCAGGGTTCTTCTTTATGAATTATGAGATCGAATCTTCAACTAAAATTACGCCTTCATAGCAAGGACATTTCTATTCAATCACCCTTTaa > 3:147307/1‑119 (MQ=255) tAGAACCCTAGCAAAGATATCTATCTTTGTCAGGGTTCTTCTTTATGAATTATGAGATCGAATCTTCAACTAAAATTACGCCTTCATAGCAAGGACATTTCTATTCAATCACCCTTTaa < 4:147307/119‑1 (MQ=255) aCCCTAGCAAAGATATCTATCTTTGTCAGGGTTCTTCTTTATGAATTATGAGATCGAATCTTCAACTAAAATTACGCCTTCATAGCAAGGACATTTCTATTCAATCACCCTTTAACAGGCATCCAAATTTCTGTAatatat > 1:631342/1‑141 (MQ=255) aCCCTAGCAAAGATATCTATCTTTGTCAGGGTTCTTCTTTATGAATTATGAGATCGAATCTTCAACTAAAATTACGCCTTCATAGCAAGGACATTTCTATTCAATCACCCTTTAACAGGCATCCAAATTTCTGTAatatat < 2:466930/141‑1 (MQ=255) cccTAGCAAAGATATCTATCTTTGTCAGGGTTCTTCTTTATGAATTATGAGATCGAATCTTCAACTAAAATTACGCCTTCATAGCAAGGACATTTCTATTCAATCACCCTTTAACAGGCATCCAAATTTCTGTAATATAtt < 1:982570/141‑1 (MQ=255) cctgacAAAGATAGATATCTTTGCTAGGGTTCTTCTTTATGAATTATGAGATCGAATCTTCAACTAAAATTACGCCTTCATAGCAAGGACATTTCTATTCAATCACCCTTTAACAGGCATCCAAATTTCTGTAatat < 2:765276/132‑1 (MQ=38) cctgacAAAGATAGATATCTTTGCTAGGGTTCTTCTTTATGAATTATGAGATCGAATCTTCAACTAAAATTACGCCTTCATAGCAAGGACATTTCTATTCAATCACCCTTTAACAGGCATCCAAATTTCTGTAatat > 1:765276/6‑137 (MQ=38) ctgacAAAGATAGATATCTTTGCTAGGGTTCTTCTTTATGAATTATGAGATCGAATCTTCAACTAAAATTACGCCTTCATAGCAAGGACATTTCTATTCAATCACCCTTTAACAGGCATCCAAATTTCTGTAATATAtttt > 4:418122/5‑141 (MQ=255) gCAAAGATATCTATCTTTGTCAGGGTTCTTCTTTATGAATTATGAGATCGAATCTTCAACTAAAATTACGCCTTCATAGCAAGGACATTTCTATTCAATCACCCTTTAACAGGCATCCAAATTTCTGTAATATATTTTTCa > 2:768959/1‑141 (MQ=255) cAAAGATAGATATCTTTGCTAGGGTTCTTCTTTATGAATTATGAGATCGAATCTTCAACTAAAATTACGCCTTCATAGCAAGGACATTTCTATTCAATCACCCTTTAACAGGCATCCAAATTTCTGTAATATATTTTTCAc > 2:618831/1‑141 (MQ=255) cAAAGATAGATATCTTTGCTAGGGTTCTTCTTTATGAATTATGAGATCGAATCTTCAACTAAAATTACGCCTTCATAGCAAGGACATTTCTATTCAATCACCCTTTAACAGGCATCCAAATTTCTGTAATATATTTTTCAc > 1:56543/1‑141 (MQ=255) aaaGATATCTATCTTTGTCAGGGTTCTTCTTTATGAATTATGAGATCGAATCTTCAACTAAAATTACGCCTTCATAGCAAGGACATTTCTATTCAATCACCCTTTAACAGGCATCCAAATTTCTGTAATATATTTTTCACt > 1:453501/1‑141 (MQ=255) aaGATATCTATCTTTGTCAGGGTTCTTCTTTATGAATTATGAGATCGAATCTTCAACTAAAATTACGCCTTCATAGCAAGGACATTTCTATTCAATCACCCTTTAACAGGCATCCAAATTTCTGTAATATATTTTTCACtt < 2:1049215/141‑1 (MQ=255) aGATATCTATCTTTGTCAGGGTTCTTCTTTATGAATTATGAGATCGAATCTTCAACTAAAATTACGCCTTCATAGCAAGGACATTTCTATTCAATCACCCTTTAACAGGCATCCAAATTTCTGTAATATATTTTTCACttt > 2:228279/1‑140 (MQ=255) aGATATCTATCTTTGTCAGGGTTCTTCTTTATGAATTATGAGATCGAATCTTCAACTAAAATTACGCCTTCATAGCAAGGACATTTCTATTCAATCACCCTTTAACAGGCATCCAAATTTCTGTAATATATTTTTCACTTg < 3:301212/141‑1 (MQ=255) aGATATCTATCTTTGTCAGGGTTCTTCTTTATGAATTATGAGAGCGAATCTTCAACTAAAATTACGCCTTCATAGCAAGGACATTTCTATTCAATCACCCTTTAACAGGCATCCAAATTTCTGTAATATATTTTTCACTTg < 3:86030/141‑1 (MQ=255) gATATCTATCTTTGTCAGGGTTCTTCTTTATGAATTATGAGATCGAATCTTCAACTAAAATTACGCCTTCATAGCAAGGACATTTCTATTCAATCACCCTTTAACAGGCATCCAAATTTCTGTAATATATTTTTCACTTgt < 2:162065/141‑1 (MQ=255) | TTTAATACATCACCATATATGATTATTATCTTCATTACAGCCATTCTATTAGTCAGTCTACAAATCATTTACTTTAAAATGATTAAAAAGCAACATGTCGCATAACACTTCAACAT‑AATTAGAACCCTAGCAAAGATATCTATCTTTGTCAGGGTTCTTCTTTATGAATTATGAGATCGAATCTTCAACTAAAATTACGCCTTCATAGCAAGGACATTTCTATTCAATCACCCTTTAACAGGCATCCAAATTTCTGTAATATATTTTTCACTTGTAGT > USA300TCH1516_ALE/2559702‑2559979 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |