New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	1502317 =	57 (1.120)	3 (0.060)	3/270	5.1	5.3%	intergenic (‑294/+104)	ebh_1/norB_4	Extracellular matrix‑binding protein ebh/Quinolone resistance protein NorB
	?	USA300TCH1516_ALE	1502366 =	52 (1.060)					intergenic (‑343/+55)	ebh_1/norB_4	Extracellular matrix‑binding protein ebh/Quinolone resistance protein NorB
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

ATATAATAACACAAAATATATTGTAAGGTAAATTGAATTTGTGACAATTTATAATAATTATAAATAAAGTAGCGTAAAAGAGTAATAAAAAACCAATCCCTATGTTCATTTAAAATAATGACACATAAGAATCGGTTTATATTTTTGTTTAATATTGTAGCGACTTGTATGATTTCAATTTAATTCTCAATTATCATAATTGAGTATCGTTTTGTTTAGGCACAAGTAACAAAATGATAACGAATGATAATATTCCCATACCTGCATTT  >  USA300TCH1516_ALE/1502228‑1502496                                                                                                                                           |                                                                                                                                   atatAATAACACAAAATATATTGTAAGGTAAATTGAATTTGTGACAATTTATAATAATTATAAATAAAGTAGCGTAAAAGAGTAATAAAAAACCAATCCCTATGTTCATTTAAAATAATGACACATAAGAATCGGTTtata                                                                                                                                  <  2:106135/141‑1 (MQ=255)  tataATAACACAAAATATATTGTAAGGTAAATTGAATTTGTGACAATTTATAATAATTATAAATAAAGTAGCGTAAAAGAGTAATAAAAAACCAATCCCTATGTTCATTTAAAATAATGACACATAAGAATCGGTTTatat                                                                                                                                 >  2:84154/1‑141 (MQ=255)  tataATAACACAAAATATATTGTAAGGTAAATTGAATTTGTGACAATTTATAATAATTATAAATAAAGTAGCGTAAAAGAGTAATAAAAAACCAATCCCTATGTTCATTTAAAATAATGACACATAAGAATCGGTTTatat                                                                                                                                 >  2:101110/1‑141 (MQ=255)    taataaCACAAAATATATTGTAAGGTAAATTGAATTTGTGACAATTTATAATAATTATAAATAAAGTAGCGTAAAAGAGTAATAAAAAACCAATCCCTATGTTCATTTAAAATAATGACACATAAGAATCGGTTTATAttt                                                                                                                               >  1:100904/1‑141 (MQ=255)    taataaCACAAAATATATTGTAAGGTAAATTGAATTTGTGACAATTTATAATAATTATAAATAAAGTAGCGTAAAAGAGTAATAAAAAACCAATCCCTATGTTCATTTAAAATAATGACACATAAGAATCGGTTTATAttt                                                                                                                               >  1:156144/1‑141 (MQ=255)    taataaCACAAAATATATTGTAAGGTAAATTGAATTTGTGACAATTTATAATAATTATAAATAAAGTAGCGTAAAAGAGTAATAAAAAACCAATCCCTATGTTCATTTAAAATAATGACACATAAGAATCGGTTTATAttt                                                                                                                               >  2:535023/1‑141 (MQ=255)    taataaCACAAAATATATTGTAAGGTAAATTGAATTTGTGACAATTTATAATAATTATAAATAAAGTAGCGTAAAAGAGTAATAAAAAACCAATCCCTATGTTCATTTAAAATAATGACACATAAGAATCGGTTTATAttt                                                                                                                               >  2:352505/1‑141 (MQ=255)      ataaCACAAAATATATTGTAAGGTAAATTGAATTTGTGACAATTTATAATAATTATAAATAAAGTAGCGTAAAAGAGTAATAAAAAACCAATCCCTATGTTCATTTAAAATAATGACACATAAGAATCGGTTTATAttttt                                                                                                                             >  1:41366/1‑141 (MQ=255)      ataaCACAAAATATATTGTAAGGTAAATTGAATTTGTGACAATTTATAATAATTATAAATAAAGTAGCGTAAAAGAGTAATAAAAAACCAATCCCTATGTTCATTTAAAATAATGACACATAAGAATCGGTTTATAttttt                                                                                                                             >  1:352656/1‑141 (MQ=255)        aaCACAAAATATATTGTAAGGTAAATTGAATTTGTGACAATTTATAATAATTATAAATAAAGTAGCGTAAAAGAGTAATAAAAAACCAATCCCTATGTTCATTTAAAATAATGACACATAAGAATCGGTTTATATTTTTGt                                                                                                                           <  2:172825/141‑1 (MQ=255)         acacAAAATATATTGTAAGGTAAATTGAATTTGTGACAATTTATAATAATTATAAATAAAGCAGCGTAAAAGAGTAATAAAAAACCAATCCCTATGTTCATTTAAAATAATGACACATAAGAATCGGTTTATATTTTTGtt                                                                                                                          >  1:139183/1‑141 (MQ=255)         acacAAAATATATTGTAAGGTAAATTGAATTTGTGACAATTTATAATAATTATAAATAAAGCAGCGTAAAAGAGTAATAAAAAACCAATCCCTATGTTCATTTAAAATAATGACACATAAGAATCGGTTTATATTTTTGtt                                                                                                                          >  2:1934/1‑141 (MQ=255)           acaAAATATAGTGTAAGGTAAATTGAATTTGTGACAATTTATAATAATTATAAATAAAGTAGCGTAAAAGAGTAATAAAAAACCAATCCCTATGTTCATTTAAAATAATGACACATAAGAATCGGTTTATATTTTTGTTTa                                                                                                                        <  2:296583/141‑1 (MQ=255)                atatatTGTAAGGTAAATTGAATTTGTGACAATTTATAATAAGTAGAAAGAAATTAGCGTAAAAGAGTAATAAAAAACCAATCCCTATGTTCATTTAAAATAATGACACATAAGAATCGGTTTATATTTTTGTTTAATAtt                                                                                                                   <  1:196551/141‑1 (MQ=255)                   tatTGTAAGGTAAATTGAATTTGTGACAATTTATAATAATTATAAATAAAGTAGCGTAAAAGAGTAATAAAAAACCAATCCCTATGTTCATTTAAAATAATGACACATAAGAATCGGTTTATATTTTTGTTTAATATTGTa                                                                                                                >  1:166869/1‑141 (MQ=255)                                             cAATTTATAATAATTATAAGTAAAGTAGCGTAAAAGAGTAATAAAAAACCAATCCCTATGTTCATTTAAAATAATGACACATAAGAATCGGTTTATATTTTTGTTTAATATTGTAGCGACTTGTATGATTTCAATTTAAtt                                                                                      >  1:274745/1‑141 (MQ=255)                                             cAATTTATAATAATTATAAATAAAGTAGCGTAAAAGAGTAATAAAAAACCAATCCCTATGTTCATTTAAAATAATGACACATAAGAATCGGTTTATATTTTTGTTTAATATTGTAGCGACTTGTATGATTTCAATTTAAtt                                                                                      >  2:328344/1‑141 (MQ=255)                                             cAATTTATAATAATTATAAATAAAGTAGCGTAAAAGAGTAATAAAAAACCAATCCCTATGTTCATTTAAAATAATGACACATAAGAATCGGTTTATATTTTTGTTTAATATTGTAGCGACTTGTATGATTTCAATTTAAtt                                                                                      >  2:536560/1‑141 (MQ=255)                                              aaTTTATAATAATTATAAATAAAGTAGCGTAAACGAGTAATAAAAAACCAATCCCTATCTTCATTTAAAATCCACACCCATAAGAATCGGTTTATATTTTTGTTTAATATTGTAGCGACTTGTATGATTTCAATTTAATtc                                                                                     <  1:198418/141‑1 (MQ=255)                                              aaTTTATAATAATTATAAATAAAGTAGCGTAAAAGAGTAATAAAAAACCAATCCCTATGTTCATTTAAAATAATGACACATAAGAATCGGTTTATATTTTTGTTTAATATTGTAGCGACTTGTATGATTTCAATTTAATtc                                                                                     <  1:212013/141‑1 (MQ=255)                                               aTTTATAATAATTATAAATAAAGTAGCGTAAAAGAGTAATAAAAAACCAATCCCTATGTTCATTTAAAATAATGACACATAAGAATCGGTTTATATTTTTGTTTAATATTGTAGCGACTTGTATGATTTCAATTTAATtct                                                                                    >  1:198594/1‑141 (MQ=255)                                               aTTTATAATAATTATAAATAAAGTAGCGTAAAAGAGTAATAAAAAACCAATCCCTATGTTCATTTAAAATAATGACACATAAGAATCGGTTTATATTTTTGTTTAATATTGTAGCGACTTGTATGATTTCAATTTAATtct                                                                                    >  2:239425/1‑141 (MQ=255)                                                     aataatTATAAATAAAGTAGCGTAAAAAAGTAATAAAAAACCAATCCCTATGTTCATTTAAAATAATGACACATAAGAATCGGTTTATATTTTTGTTTAATATTGTAGCGACTTGTATGATTTCAATTTAATTCTCAATTa                                                                              <  2:190082/141‑1 (MQ=255)                                                                ataaaGCAGCGTAAAAGAGTAATAAAAAACCAATCCCTATGTTCATTTAAAATAATGACACATAAGAATCGGTTTATATTTTTGTTTAATATTGTAGCGACTTGTATGATTTCAATTTAATTCTCAATTATCATAATTGAg                                                                   <  1:1934/141‑1 (MQ=255)                                                                ataaaGCAGCGTAAAAGAGTAATAAAAAACCAATCCCTATGTTCATTTAAAATAATGACACATAAGAATCGGTTTATATTTTTGTTTAATATTGTAGCGACTTGTATGATTTCAATTTAATTCTCAATTATCATAATTGAg                                                                   <  2:139183/141‑1 (MQ=255)                                                                     gTAGCGTAAAAGAGTAATAAAAAACCAATCCCTATGTTCATTTAAAATAATGACACATAAGAATCGGTTTATATTTTTGTTTAATATTGTAGCGACTTGTATGATTTCAATTTAATTCTCAATTATCATAATTGAGTATCg                                                              >  1:175881/1‑141 (MQ=255)                                                                      tAGCGTAAAAGAGTAATAAAAAACCAATCCCTATGTTCATTTAAAATAATGACACATAAGAATCGGTTTATATTTTTGTTTAATATTGTAGCGACTTGTATGATTTCAATTTAATTCTCAATTATCATAATTGAGTATCGt                                                             <  1:84154/141‑1 (MQ=255)                                                                      tAGCGTAAAAGAGTAATAAAAAACCAATCCCTATGTTCATTTAAAATAATGACACATAAGAATCGGTTTATATTTTTGTTTAATATTGTAGCGACTTGTATGATTTCAATTTAATTCTCAATTATCATAATTGAGTATCGt                                                             <  1:101110/141‑1 (MQ=255)                                                                       aGCGTAAAAGAGTAATAAAAAACCAATCCCTATGTTCATTTAAAATAATGACACATAAGAATCGGTTTATATTTTTGTTTAATATTGTAGCGACTTGTATGATTTCAATTTAATTCTCAATTATCATAATTGAGTATCGtt                                                            >  1:122987/1‑141 (MQ=255)                                                                          gTAAAAGAGTAATAAAAAACCAATCCCTATGTTCATTTAAAATAATGACACATAAGAATCGGTTTATATTTTTGTTTAATATTGTAGCGACTTGTATGATTTCAATTTAATTCTCAATTATCATAATTGAGTATCGTTTTg                                                         <  2:463692/141‑1 (MQ=255)                                                                             aaaGAGTAATAAAAAACCAATCCCTATGTTCATTTAAAATAATGACACATAAGAATCGGTTTATATTTTTGTTTAATATTGTAGCGACTTGTATGATTTCAATTTAATTCTCAATTATCATAATTGAGTATCGTTTTGttt                                                      <  1:116979/141‑1 (MQ=255)                                                                              aaGAGTAATAAAAAACCAATCCCTATGTTCATTTAAAATAATGACACATAAGAATCGGTTTATATTTTTGTTTAATATTGTAGCGACTTGTATGATTTCAATTTAATTCTCAATTATCATAATTGAGTATCGTTTTGTTTa                                                     >  2:238595/1‑141 (MQ=255)                                                                                     ataaAAAACCAATCCCTATGTTCATTTAAAATAATGACACATAAGAATCGGTTTATATTTTTGTTTAATATTGTAGCGACTTGTATGATTTCAATTTAATTCTCAATTATCATAATTGAGTATCGTTTTGTTTAGGCACaa                                              <  2:168976/141‑1 (MQ=255)                                                                                     ataaAAAACCAATCCCTATGTTCATTTAAAATAATGACACATAAGAATCGGTTTATATTTTTGTTTAATATTGTAGCGACTTGTATGATTTCAATTTAATTCTCAATTATCATAATTGAGTATCGTTTTGTTTAGGCACaa                                              <  2:283721/141‑1 (MQ=255)                                                                                      taaATAACCAATCCCTATGTTCATTTAAAATAATGACACATAAGAATCGGTTTATATTTTTGTTTAATATTGTAGCGACTTGTATGATTTCAATTTAATTCTCAATTATCATAATTGAGTATCGTTTTGTTTAGGCACAAg                                             <  1:352505/141‑1 (MQ=255)                                                                                      taaAAAACCAATCCCTATGTTCATTTAAAATAATGACACATAAGAATCGGTTTATATTTTTGTTTAATATTGTAGCGACTTGTATGATTTCAATTTAATTCTCAATTATCATAATTGAGTATCGTTTTGTTTAGGCACAAg                                             <  1:535023/141‑1 (MQ=255)                                                                                      taaAAAACCAATCCCTATGTTCATTTAAAATAATGACACATAAGAATCGGTTTATATTTTTGTTTAATATTGTAGCGACTTGTATGATTTCAATTTAATTCTCAATTATCATAATTGAGTATCGTTTTGTTTAGGCACAAg                                             <  2:100904/141‑1 (MQ=255)                                                                                      taaAAAACCAATCCCTATGTTCATTTAAAATAATGACACATAAGAATCGGTTTATATTTTTGTTTAATATTGTAGCGACTTGTATGATTTCAATTTAATTCTCAATTATCATAATTGAGTATCGTTTTGTTTAGGCACAAg                                             <  2:156144/141‑1 (MQ=255)                                                                                       aaaaaaCCAATCCCTATGTTCATTTAAAATAATGACACATAAGAATCGGTTTATATTTTTGTTTAATATTGTAGCGACTTGTATGATTTCAATTTAATTCTCAATTATCATAATTGAGTATCGTTTTGTTTAGGCACAAGt                                            >  2:441092/1‑141 (MQ=255)                                                                                       aaaaaaCCAATCCCTATGTTCATTTAAAATAATGACACATAAGAATCGGTTTATATTTTTGTTTAATATTGTAGCGACTTGTATGATTTCAATTTAATTCTCAATTATCATAATTGAGTATCGTTTTGTTTAGGCACAAGt                                            >  2:434817/1‑141 (MQ=255)                                                                                                  cccTATGTTCATTTAAAATAATGACACATAAGAATCGGTTTATATTTTTGTTTAATATTGTAGCGACTTGTATGATTTCAATTTAATTCTCAATTATCATAATTGAGTATCGTTTTGTTTAGGCACAAGTAACAAAATGAt                                 <  2:543744/141‑1 (MQ=255)                                                                                                        gTTCATTTAAAATAATGACACATAAGAATCGGTTTATATTTTTGTTTAATATTGTAGCGACTTGTATGATTTCAATTTAATTCTCAATTATCATAATTGAGTATCGTTTTGTTTAGGCACAAGTAACAAAATGATAACGaa                           <  2:182820/141‑1 (MQ=255)                                                                                                        gTTCATTTAAAATAATGACACATAAGAATCGGTTTATATTTTTGTTTAATATTGTAGCGACTTGTATGATTTCAATTTAATTCTCAATTATCATAATTGAGTATCGTTTTGTTTAGGCACAAGTAACAAAATGATAACGaa                           <  2:261982/141‑1 (MQ=255)                                                                                                          tCATTTAAAATAATGACACATAAGAATCGGTTTATATTTTTGTTTAATATTGTAGCGACTTGTATGATTTCAATTTAATTCTCAATTATCATAATTGAGTATCGTTTTGTTTAGGCACAAGTAACAAAATGATAACGAATg                         <  1:435665/141‑1 (MQ=255)                                                                                                          tCATTTAAAATAATGACACATAAGAATCGGTTTATATTTTTGTTTAATATTGTAGCGACTTGTATGATTTCAATTTAATTCTCAATTATCATAATTGAGTATCATTTTGTTNAGGCACAAGTAANAAAATGATAACGAATg                         <  1:410759/141‑1 (MQ=255)                                                                                                            aTTTAAAATAATGACACATAAGAATCGGTTTATATTTTTGTTTAATATTGTAGCGACTTGTATGATTTCAATTTAATTCTCAATTATCATAATTGAGTATCGTTTTGTTTAGGCACAAGTAACAAAATGATAACGAATGat                       <  2:175881/141‑1 (MQ=255)                                                                                                            aTTTAAAATAATGACACATAAGAATCGGTTTATATTTTTGTTTAATATTGTAGCGACTTGTATGATTTCAATTTAATTCTCAATTATCATAATTGAGTATCGTTTTGTTTAGGCACAAGTAACAAAATGATAACGAATGat                       <  2:166869/141‑1 (MQ=255)                                                                                                              ttAAAATAATGACACATAAGAATCGGTTTATATTTTTGTTTAATATTGTAGCGACTTGTATGATTTCAATTTAATTCTCAATTATCATAATTGAGTATCGTTTTGTTTAGGCACAAGTAACAAAATGATAACGAATGataa                     <  1:512621/141‑1 (MQ=255)                                                                                                                         acacATAAGAATCGGTTTATATTTTTGTTTAATATTGTAGCGACTTGTATGATTTCAATTTAATTCTCAATTATCATAATTGAGTATCGTTTTGTTTAGGCACAAGTAACAAAATGATAACGAATGATAATATTCCCATAc          >  2:233697/1‑141 (MQ=255)                                                                                                                         acacATAAGAATCGGTTTATATTTTTGTTTAATATTGTAGCGACTTGTATGATTTCAATTTAATTCTCAATTATCATAATTGAGTATCGTTTTGTTTAGGCACAAGTAACAAAATGATAACGAATGATAATATTCCCATAc          >  1:379065/1‑141 (MQ=255)                                                                                                                              tAAGAATCGGTTTATATTTTTGTTTAATATTGTAGCGACTTGTATGATTTCAATTTAATTCTCAATTATCATAATTGAGTATCGTTTTGTTTAGGCACAAGTAACAAAATGATAACGAATGATAATATTCCCATACCTGCa     <  2:292283/141‑1 (MQ=255)                                                                                                                                 gAATCGGTTTATATTTTTGTTTAATATTGTAGCGACTTGTATGATTTCAATTTAATTCTCAATTATCATAATTGAGTATCGTTTTGTTTAGGCACAAGTAACAAAATGATAACGAATGATAATATTCCCATACCTGCAttt  >  1:231209/1‑141 (MQ=255)                                                                                                                                           |                                                                                                                                   ATATAATAACACAAAATATATTGTAAGGTAAATTGAATTTGTGACAATTTATAATAATTATAAATAAAGTAGCGTAAAAGAGTAATAAAAAACCAATCCCTATGTTCATTTAAAATAATGACACATAAGAATCGGTTTATATTTTTGTTTAATATTGTAGCGACTTGTATGATTTCAATTTAATTCTCAATTATCATAATTGAGTATCGTTTTGTTTAGGCACAAGTAACAAAATGATAACGAATGATAATATTCCCATACCTGCATTT  >  USA300TCH1516_ALE/1502228‑1502496

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.