BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_012417	= 1954	633 (0.990)	6 (0.010)	5/262	46.4	1.1%	intergenic (+187/+139)	USA300HOU_RS14895/USA300HOU_RS14900	hypothetical protein/hypothetical protein
*	?	NC_012417	= 2064	518 (0.860)	6 (0.010)	5/262	46.4	1.1%	intergenic (+297/+29)	USA300HOU_RS14895/USA300HOU_RS14900	hypothetical protein/hypothetical protein
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

Only 100 of 641 total aligned reads displayed.

TTTTTTTATTCCTATTGGTGTTGTTGCTTACTTTTTGTTTTTCTATAAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATG‑TCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTCCGAGGCTCAACGTCAATAAAGCAATTGGAATAAATAGTATC  >  NC_012417/1815‑2093

    tttATTCCTATTGGTGTTGTTGATTAAATTTTGTTTTTCTATAAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGtt                                                                                                                                          <  2:1185/140‑1 (MQ=255)

     ttatgtgtATTGGTGTGTGTGATTACTTTTTATTTTTCTATAAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTg                                                                                                                                         <  2:248373/133‑1 (MQ=255)

     ttATTCCTATTGGTGTTGTTGCTTACTTTTTGTTTTTCTATAAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTg                                                                                                                                         >  1:220831/1‑140 (MQ=255)

      tgtttatATTGGTGTTGTTGCTTACTTTTTGTTTTTCTATAAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTga                                                                                                                                        <  2:8346/134‑1 (MQ=255)

       aTTCCCATTGGTGTTGTTGCTTACTTTTTGTTTTTCTATAAAGATGATGCTTTTGACGAGATGGAAGAAAGATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTgag                                                                                                                                       <  1:84185/140‑1 (MQ=255)

        ttCCTATTGGTGTTGTTGCTTACTTTTTGTTTTTCTATAAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTgaga                                                                                                                                      <  2:121336/140‑1 (MQ=255)

        ttCCTATTGGTGTTGTTGCTTACTTTTTGTTTTTCTATAAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTAATGACGAGAAAATTTATTGATGTTgaga                                                                                                                                      >  1:174090/1‑140 (MQ=255)

          ccTATTGGTGTTGTTGCTTACTTTTTGTTTTTCTATAAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGagaag                                                                                                                                    <  1:217505/140‑1 (MQ=255)

          ccTATTGGTGTTGTTGCTTACTTTTTGTTTTTCTATAAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACACGTTTATGCCGAGAAAATTTATTGATGTTGagaag                                                                                                                                    >  1:203932/1‑140 (MQ=255)

               tGGTGTTGTTGCTTACTTTTTGTTTTTCTATAAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAAccc                                                                                                                               <  2:168028/140‑1 (MQ=255)

               tGGTGTTGTTGCTTACTTTTTGTTTATCTATAAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAAccc                                                                                                                               <  2:191607/140‑1 (MQ=255)

                ggTGTTGTTGGTTACTTTTTGTTTTTCTATAAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCt                                                                                                                              <  2:147906/140‑1 (MQ=255)

                 gtgtTGTTGCTTACTTTTTGTTTTTCTATAAAGATGATGCTTTTGACGAGATGGAAGAGAAGTATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCTAGAAAATTTATTGATGTTGAGAAGAACCCtt                                                                                                                             >  1:68044/1‑140 (MQ=255)

                 gtgtTGTTGCTTACTTTTTGTTTTTCTATAAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCtt                                                                                                                             >  1:58001/1‑140 (MQ=255)

                  tgttgtTGCTTATTTTTTGTTTTTCTATAAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTa                                                                                                                            <  2:66403/140‑1 (MQ=255)

                     tgttgCTTACTTTTTGTTTTTCTATAAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACt                                                                                                                         >  2:165490/1‑140 (MQ=255)

                      gttgCTTACTTTTTGTTTTTCTATAAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTCTTGATGGTTAGAATAACCCTTAACTa                                                                                                                        >  1:98349/1‑140 (MQ=255)

                       ttgCTTACTTTTTGTTTTTCTATAAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTaa                                                                                                                       <  2:251652/140‑1 (MQ=255)

                       ttgCTTACTTTTTGTTTTTCTATAAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCATTAACTaa                                                                                                                       >  2:239298/1‑140 (MQ=255)

                            tACTTTTTGTTTTTCTATAAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTg                                                                                                                  >  2:136961/1‑140 (MQ=255)

                             aCTTTTTGTTTTTCTATAAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGc                                                                                                                 >  2:88096/1‑140 (MQ=255)

                               tttttGTTTTTCTATAAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAg                                                                                                               <  2:156741/140‑1 (MQ=255)

                                ttttGTTTTTTTATAAATATAATGCTTTAGACGAGATAGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGa                                                                                                              <  1:106085/140‑1 (MQ=37)

                                ttttGTTTTTCTATAAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGa                                                                                                              <  1:63159/140‑1 (MQ=255)

                                 tttGTGTTTCTATAAAGATGATGTTTTTGAGGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGAc                                                                                                             <  2:1753/140‑1 (MQ=255)

                                 tttGTGTGTCTATATAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGAc                                                                                                             <  2:212904/140‑1 (MQ=255)

                                   tGTTTTTCTATAAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGa                                                                                                           >  1:230613/1‑140 (MQ=255)

                                   tGTTTTTCTATAAAGATGATACTCTAAACGAAAATATAGAAAAATATAATTATCATTAATAAAATAAAAAATAAACGACGCATATATACCGAGCAACTTTATTCATCTTGAGAAGAACCCATAACTAAACTTGCacacca                                                                                                           >  2:95038/1‑138 (MQ=255)

                                    gTTTTTCTATAAAGATGATGTATATCAGGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGATCAGAATAACCCTTAACTAAACTTACAGACGaa                                                                                                          >  2:215646/1‑140 (MQ=255)

                                    gTTTTTCTATAAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGaa                                                                                                          >  1:45298/1‑140 (MQ=255)

                                     tttttCTATAAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGACGGTGGTCATGAATAGTCGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAAt                                                                                                         <  1:123884/140‑1 (MQ=25)

                                       tttCTATAAAGATGATGCTTTTGACGAGATGGAATAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATG‑t                                                                                                      <  1:189358/140‑1 (MQ=255)

                                        ttCTATAAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATG‑Tc                                                                                                     >  1:118232/1‑140 (MQ=255)

                                        ttCTATAAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATA‑Tc                                                                                                     >  2:142906/1‑140 (MQ=255)

                                         tCTATAAAGATAATGCTTATGACGATAAAAAAGAAAAATATAATTATAATAAAGATAATAAAAAATAGACTACGCATTTATGCCTAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATG‑TCg                                                                                                    <  2:199343/140‑1 (MQ=21)

                                          cTATAAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATG‑TCgg                                                                                                   <  2:39742/140‑1 (MQ=255)

                                            ataAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTTTGGCGGGAAAAGTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATG‑TCGGCa                                                                                                 <  1:37906/140‑1 (MQ=255)

                                              aaaGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATG‑TCGCCATa                                                                                               >  2:71115/1‑140 (MQ=255)

                                                aGATGATTCTTTCGAAGAGATGTAAGAAAAATATGATTATACGGAAGATAATAAAAAGTAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATG‑TCGGCATAGc                                                                                             <  2:185725/140‑1 (MQ=21)

                                                   tgatgCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATG‑TCGGCATAGCGTg                                                                                          <  1:150733/140‑1 (MQ=255)

                                                    gatgCTTTTGACGAGATGGAAGAAAAATATGATTATCAAGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATG‑TCGCCATAgaacga                                                                                         >  2:182081/1‑135 (MQ=255)

                                                    gatgCATTTGATTATATGGAAGAAAAATATGATTATTATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATG‑TCGGCATAGCGTGa                                                                                         <  2:217588/140‑1 (MQ=21)

                                                       gCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGCAAATATCCTTTTTTGGAGAAGAACCCTTAACTAAACTTGCAGACGAATG‑TCGGCATAGCGTGAGCt                                                                                      >  1:260050/1‑140 (MQ=25)

                                                        cTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATG‑TCGGCATAGCGTGAGCTa                                                                                     >  1:244788/1‑140 (MQ=255)

                                                        cTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGACGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGAAGACGAATG‑TCGGCATAGCGTGAGCTa                                                                                     >  2:129602/1‑140 (MQ=255)

                                                           ttGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATG‑TCGGCATAGCTTGAGCTGTTa                                                                                  >  1:34483/1‑140 (MQ=255)

                                                           gagACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATG‑TCGGCATAGCGTGAGCTATTa                                                                                  <  2:124881/138‑1 (MQ=255)

                                                             gACGAGAAGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATG‑TCGGCATAGCGTGAGCTATTAAg                                                                                <  1:224261/140‑1 (MQ=255)

                                                              tggagaTGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAACCTGGCAGACGAATG‑TCGGCATAGCGTGAGCTATTAAGc                                                                               >  1:101635/3‑140 (MQ=255)

                                                              aCGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATG‑TCGGCATAGCGTGAGCTATTAAGc                                                                               >  1:211280/1‑140 (MQ=255)

                                                              aCGAGATAGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATG‑TCGGCATAGCGTGAGCTATTAAGc                                                                               <  1:16891/140‑1 (MQ=255)

                                                                          aaaaaTATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATG‑TCGGCATAGCGTGAGCTATTAAGCCGACCATTCGAc                                                                   <  2:172213/140‑1 (MQ=255)

                                                                              atatGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATG‑TCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGt                                                               <  1:185283/140‑1 (MQ=255)

                                                                               tatGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATG‑TCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGtt                                                              >  2:53092/1‑140 (MQ=255)

                                                                               tatGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATG‑TCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGtt                                                              <  2:113206/140‑1 (MQ=255)

                                                                                aggATTAACATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATG‑TCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGttt                                                             <  1:86588/138‑1 (MQ=255)

                                                                                 tgatgaACAGGAAGATAATAAAACATAGATGACGTATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATG‑TCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGtttt                                                            <  2:196563/140‑1 (MQ=14)

                                                                                 tGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATG‑TCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGtttt                                                            <  2:73059/140‑1 (MQ=255)

                                                                                 tGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATG‑TCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGtttt                                                            <  1:53796/140‑1 (MQ=255)

                                                                                  gATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATG‑TCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTg                                                           >  1:132287/1‑140 (MQ=255)

                                                                                   aTTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATG‑TCGGCATAGAGTGAGCTATTAAGCCGACCATTCGATAAGTTCTgg                                                          >  2:60972/1‑140 (MQ=255)

                                                                                         aTGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATG‑TCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGt                                                    >  1:226659/1‑140 (MQ=255)

                                                                                           gAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATG‑TCGGCATAGCGTGAGCTATTAAGCCGACCCTTCGACCCGTTTTGGGATTGTTa                                                  >  1:19789/1‑140 (MQ=255)

                                                                                            aaGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATG‑TCGGCATAGCGGGGGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTaa                                                 <  1:248868/140‑1 (MQ=255)

                                                                                             aGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATG‑TCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTCAg                                                >  1:76077/1‑140 (MQ=255)

                                                                                              gATAATAAAAAATAGACTACGCATTTAAGCCGAGAAAATTTATTGATGTTGAGAAGAACACTTAACTAAACTTGCAGACGAATG‑TCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAgg                                               <  1:13992/140‑1 (MQ=255)

                                                                                              gATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATG‑TCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAgg                                               <  2:261200/140‑1 (MQ=255)

                                                                                               ataataAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATG‑TCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAggg                                              >  1:194200/1‑140 (MQ=255)

                                                                                                taataaAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATG‑TCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGt                                             <  1:28565/140‑1 (MQ=255)

                                                                                                  ataaAAAATAGACGACGCATTTATGCAGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATG‑TCGGCATAGCGATAGCTATTAAACCAACCATTCGACAAGCATTGAGATTGTTAAGGAtta                                           >  2:23242/1‑139 (MQ=14)

                                                                                                   taaAAAATAGACGACGCATTTATGCCGCGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATG‑TCGGCATAGCGTGAGCTATTAAACCGACCATTCGACAACTTTTGGGATTGTTATGGGtcac                                          >  2:244125/1‑137 (MQ=14)

                                                                                                   taaAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAATCCTTAACTAAACTTGCAGACGAATG‑TCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTcc                                          <  1:25453/140‑1 (MQ=255)

                                                                                                    aaaaaaTAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAGCTTGCAGACGAATG‑TCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTCCg                                         >  2:44195/1‑140 (MQ=255)

                                                                                                    aaaaaaTAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATG‑TCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTCCg                                         >  1:215803/1‑140 (MQ=255)

                                                                                                       aaaTAGACGACGCATTTATGCCGAGAAAATTTCTTGGTGTTTGGAAGAACCCTTAACTAAACTTGCAGACGAATG‑TCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTCCGAgg                                      <  1:178593/140‑1 (MQ=255)

                                                                                                       aaaTAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATA‑TCGACATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTCCGAga                                      >  2:3086/1‑139 (MQ=255)

                                                                                                         aTAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATG‑TCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTCCGAGGCt                                    <  1:162999/140‑1 (MQ=38)

                                                                                                          tAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATG‑TCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAGGTCTCGGGATTGTTAAGGGTTCCGAAGCTc                                   >  2:105422/1‑140 (MQ=255)

                                                                                                            gacgacGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATG‑TCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTCCGAGGCTCaa                                 <  1:147416/140‑1 (MQ=35)

                                                                                                             acgatgCATTTATGACTAGAAAATTTATTTATGTGGAGAAGAACCAATCACGAAAGTTTCAGATGAATG‑TCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTCCGAGGCTCAAc                                <  2:226376/140‑1 (MQ=11)

                                                                                                             acgacgCATTTATGTCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATG‑TCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTCCGAGGCTCAAc                                <  2:152652/140‑1 (MQ=21)

                                                                                                             acgacgCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATG‑TCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTACGGGTTCCGAGGCTCAAc                                >  1:24070/1‑140 (MQ=25)

                                                                                                             acgacgCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATG‑TCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTCCGAGGCTCAAc                                <  1:136543/140‑1 (MQ=34)

                                                                                                              ttacgCATTTATGCTGAGAAAATTTATTGATGTTGTGAATAACTCTTAACTAAACTTGCAGACGAATG‑TCGGCATAGCGTGAGCTATTAAGCCTACCATTTGACAAGTTTTGGGATTGTTAAGGGTTCTGAGGCTCAACg                               <  2:20808/138‑1 (MQ=11)

                                                                                                                 cgCATTTATGCCGAGAAAAGTTATTGATGTTGAGAAGAACCCTTCCCTCACCCTCAATAGGAAGA‑TCGGCATTGTGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTCCGAGGCTCAACGTCa                            <  1:50107/140‑1 (MQ=11)

                                                                                                                     tttATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATG‑TCGGCATAGCGTGAGCTATTAAGCCGACCATTAGACAAGTTTTGGGACTGTTAAGGGTTCCGAGGCTCAACGGCAATaa                        >  2:59099/1‑140 (MQ=12)

                                                                                                                     tttATGCCGAGAAAATTTATTGATGTTAAAAAGAACCTTTAATTGAACTTGCAGACGAATG‑TCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTCCGAGGCTCAACGTCAATaa                        >  1:113893/1‑140 (MQ=11)

                                                                                                                       tATGCCGAGAAAATTTATTGATGTTGAGAAGACACCATAACTAAACTTGCAGACGAATG‑TCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTCCGAGGCTCAACGTCAATAAAg                      <  1:71689/140‑1 (MQ=12)

                                                                                                                             gagaAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATG‑TCGGCATAGCGTGAGCTATTTAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTCCGAGGCTCAACGTCAATAAAGCAATTg                <  1:125849/140‑1 (MQ=17)

                                                                                                                             gagaAAAGTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATG‑TCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTCCGAGGCTCAACGTCAATAAAGCAATTg                <  1:26281/140‑1 (MQ=17)

                                                                                                                              agaAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATG‑TCGGCATAGCGTGAGCTATTAAGTCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTCCGAGGCTCAACGTCAATAAAGCAATTgg               <  2:48402/140‑1 (MQ=14)

                                                                                                                              agaAAATTTATTGATGATGAGAAGAACCCTTAACTAAACTTGCAGACGAATG‑TCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGACTGTTAAGCGTACCGAGCCCCAACGTCCATAAAGCAACTgc               >  2:7996/1‑139 (MQ=11)

                                                                                                                              agaAAAGTTATTGATGTTGAGAAGAACCGTTAACTAAACTTGCAGAAGAACGCTCAAAAAAGAG‑AATCTATTCAGGTCAGCATTAGATAAGTTTTGGGATTGTTAAGGGTTCCGAGGCTCAACGTCAATAAAGCAATTgg               <  2:255511/140‑1 (MQ=2)

                                                                                                                                     ttATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATG‑TCGGCACAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATGGTTAAGGGTTCCGAGGCTCAACGTCAATAAAGCAATTGGaataaat        >  1:237923/1‑140 (MQ=11)

                                                                                                                                     ttATTGATGTTGAGAAGAACACTTAACTAAACTTGCAGACGAATG‑GCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTCCGAGGCTCAACGTCAATAAAGCAATTGGaataaat        <  1:80277/140‑1 (MQ=11)

                                                                                                                                      tATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATG‑TCGGCATAGCGTGAGCTATTAAGCCGACCATTCGAGAAGTTTTGGGATTTTTAAGGGTTACGAGAGTGAACGTCAATAAAGCAATTGGaataaata       >  1:90622/1‑140 (MQ=11)

                                                                                                                                       aTTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATG‑TCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTCCGAGGCTCAACGTCAATAAAGCAATTGGAATAAATAg      >  1:172126/1‑140 (MQ=32)

                                                                                                                                         tGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATG‑TCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTCCGAGGCTCAACGTCAATAAAGCAATTGGAATAAATAGTa    >  2:20470/1‑140 (MQ=33)

                                                                                                                                          gATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATG‑TCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTCCGAGGCTCAACGTCAATAAAGCAATTGGAATAAATAGTAt   <  1:153597/140‑1 (MQ=34)

                                                                                                                                           aTGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATG‑TCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTCCGAGGCTCCACGTCAATAAAGCAATTGGAATAAATAGTATc  >  1:111123/1‑140 (MQ=25)

TTTTTTTATTCCTATTGGTGTTGTTGCTTACTTTTTGTTTTTCTATAAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATG‑TCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTCCGAGGCTCAACGTCAATAAAGCAATTGGAATAAATAGTATC  >  NC_012417/1815‑2093

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 12 ≤` `ATCG/ATCG` `< 13 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.