| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | 2085296 = | 20 (0.890) | 5 (0.250) | 5/250 | 2.0 | 24.4% | coding (173/201 nt) | hlb_1 | Phospholipase C |
| ? | USA300TCH1516_ALE | = 2128343 | 13 (0.640) | coding (1/825 nt) | hlb_2 | Phospholipase C | |||||
AAAAGTTGCAACACTTGCATTAGCAAATTTATTAT‑TAGTTGGTGCACTTACTGACAATAGTGCCAAAGCCGAATCTAAGAAAGATGATACTGATTTGAAGTTAGTTAGTCATAACGTTTATATGTTATCGACCGTTTTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAGGTTTATAACTTTATCATTATCAATAATACCTCATATAAAATAAAATTTTAGGGACTTTTTAGGGACTT > USA300TCH1516_ALE/2085159‑2085433 | acatccgtgtattctcatttgttagaagaaaaatttaatgaagaggacaaaaaaacaactaaaattttagaaagtatgtaatttagggacccattagggactccaaacccaataaatactgttgttacaatgtttctaTg < 1:35516‑M1/2‑1 (MQ=255) aaaGTTGCAACACTTGCATTAGCAAATTTATCATCCAGGCAG‑ACTCTTACTGACAATAGTGCCAAAGCCGAATCTAAGAAAGATGATACTGATTTGAAGTTAGTTAGTCATCACGTTTATATGTTCTCGACCGTTTTGTa > 2:188076/1‑140 (MQ=255) aGTTGCAACACTTGCATTAGCAAATTTATTAT‑TAGTTGGTGCACTTACTGACAATAGTGCCAAAGCCGAATCTAAGAAAGATGATACTGATTTGAAGTTAGTTAGTCATAACGTTTATATGTTATCGACCGTTTTGTATc > 1:116792/1‑140 (MQ=255) gTTGCAACACTTGCATTAGCAAATTTATTAT‑TAGTTGGTGCACTTACTGACAATAGTGGCAAAGCCGAATCTAAGAAAGATGATACTGATTTGAAGTTAGTTAGTCATAACGTTTATATGTTATCGACCGTTTTGTATcc < 2:71673/140‑1 (MQ=255) cTTGTATTAGCAAATTTATTAT‑TAGTTGGTGCACTTACTGACAATAGTGCCAAAGCCGAATCTAAGAAAGATGATACTGATTTGAAGTTAGTTAGTCATAACGTTTATATGTTATCGACCGTTTTGTATCCAAACTGgag < 2:20140/140‑1 (MQ=255) ttccATTAGCAAATTTATTAC‑GAGTTTGTGCACTTACTCACAATACTGCCAAAGCCGAATCTAAGAAAGCTGATACTGATTTGAAGTTAGTTAGTCATAACGTTTATATGTTATCGACCGTTTTGTATCCAAACTGgaga < 1:170752/137‑1 (MQ=255) aagaaaaatttaatgaagaggaaaaaaaaacaactaaaattttagaaagtatgtaatttagggacccattagggactccaaacccaataaatactgttgttacaaggtttctaTGTATCCAAACTGGAGACTTTTAACAt > 1:71099‑M1/114‑140 (MQ=255) aTTTATTAT‑TAGTTGGTGCACTTACTGACAATAGTGCCAAAGCCGAATCTAAGAAAGATGATACTGATTTGAAGTTAGTTAGTCATAACGTTTATATGTTATCGACCGTTTTGTATCCAAAATGGAGACGTTTCACATaa > 2:54017/1‑140 (MQ=255) gaaaaatttaatgaagagtacaataagacaactaaaattttagaaagtatgtaatttagggacccattagggactccaaacccaataaatactgttgttacaaggtttctaTGTATCCAAACTGGAGACTTTTAACATaa < 2:161159‑M1/29‑1 (MQ=255) ggacaaaaaaacaactaaaattttagaaagtatgtaatttagggacccattagggactccaaacccaataaatactgttgttacaaggtttctaTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCaa > 1:2499‑M1/95‑140 (MQ=255) aaaaaaacaactaaaattttagaaagtatgtaatatagggccccattagggactccaaacccaataaatactgttgttacaaggtttctaTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAg > 2:197251‑M1/91‑140 (MQ=255) agaaTAGTGCTAGAGGCGAATCTAAGAAAGATGATACTGATTTGAAGTTAGTTAGTCATAACGTTTATATGTTATCGACCGTTTTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAAc < 2:251649/138‑1 (MQ=255) aGTGCCAAAGCCGAATCTAAGAAAGATGATACTGATTTGAAGTTAGTTAGTCATAACGTTTATATGTTATCGACCGTTTTGTATCCAAACTGGAGACTTTTAAAATAAATTTACTTATCATTCAAAAAGGAAAACAGCat > 2:117211/1‑140 (MQ=255) gTGCCAAAGCCGAATCTAAGAAAGATGATACTGATTTGAAGTTAGTTAGTCATAACGTTTATATGTTATCGACAGTTTTGTATCCAAACTGGAGACTTTTAAAATAAAATTACTTATCATTAAACAAGTaaaaacccatc > 2:89896/1‑133 (MQ=255) gTGCCAAAGCCGAATATAAGAAAGACGATACTGATTTGAAGTTAGTTAGTCATAAAGATTATATGTTATCGACCGTTCTGTATCCAAACTGTAGACTATTCACATAACATTACTTATCATTTGAAAAGTAACACAGCata > 2:252450/1‑140 (MQ=255) ccAAAGCCGAATCTAAGAAAGATGATACTGATTTGAAGTTAGTTAGTCATAACGTTTATATGTTATCGACCGTTTTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCataata < 1:24693/140‑1 (MQ=255) aaaGCCGAATCTAAGAAAGATGATACTGATTTGAAGTTAGTTAGTCATAACGTTTATATGTTATCGACCGTTTTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATTATTCAAAAAGTAAAATAGCataataac > 2:258144/1‑138 (MQ=255) cTAAGAAAGATGATACTGATTTGAAGTTAGTTAGTCATAACGTTTATATGTTATCGACCGTTTTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAGGTTtata < 2:220889/140‑1 (MQ=255) atACTGATTTGAAGTTAGTTAGTCATAACGTTTATATGTTATCGACCGTTTTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAGGTTTATAACTttatcatta < 2:95390/140‑1 (MQ=255) tACTGATTTGAAGTTAGTTAGTCATAACGTTTATATGTTATCGACCGTTTTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAGGTTTATAACTttatcattat < 1:54017/140‑1 (MQ=255) aCTGATTTGAAGTTAGTTAGTCATAACGTTTATATGTTATCGACCGTTTTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTACAACAGCATAATATCAAGGTTTATAACTttatcattatc > 2:250283/1‑140 (MQ=255) atatGTTATCGACCGTTTTGTATCCAAACTGTAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAATAGCATAATATCAATGTTTATAACTTTATCATTATCAATAATACCTCATATAAAATTAAAttttagg < 2:7330/140‑1 (MQ=255) ttctaTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAGGTTTATAACTTTATCATTATCAATAATACCTCATATAAAATAAAAttttagggactttttaggga < 1:196593‑M1/135‑1 (MQ=255) cGTTTTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAGGTTTATAACTTTATCATTATCAATAATACATCATATAAAATAAAAttttagggactttttagcga > 2:163959/1‑140 (MQ=255) tttGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAGGTTTATAACTTTATCATTATCAATAATACCTCATATAAAATAAAATtttagggactttttagggactt > 2:258797/1‑140 (MQ=255) tttGTATCCAAACTGGAGACGTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAGGTTTATAACTTTATCATTATCAATAATACCTCATATAAAATAAAATtttagggactttttagggactt < 1:145365/140‑1 (MQ=255) | AAAAGTTGCAACACTTGCATTAGCAAATTTATTAT‑TAGTTGGTGCACTTACTGACAATAGTGCCAAAGCCGAATCTAAGAAAGATGATACTGATTTGAAGTTAGTTAGTCATAACGTTTATATGTTATCGACCGTTTTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAGGTTTATAACTTTATCATTATCAATAATACCTCATATAAAATAAAATTTTAGGGACTTTTTAGGGACTT > USA300TCH1516_ALE/2085159‑2085433 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |