breseq version 0.33.1 revision 8505477f25b3
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
Predicted mutations | |||||||
---|---|---|---|---|---|---|---|
evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | CP000731 | 81 | N→G | 100% | intergenic (–/‑151) | – / → repA | –/replication protein A |
JC | CP000731 | 6,552 | +28 bp | 100% | intergenic (+1069/‑419) | cadX → / → USA300HOU_pUSA300HOUMR0010 | cadmium efflux regulator/MarR family transcriptional regulator |
RA | CP000731 | 12,012 | A→G | 5.2% | intergenic (+175/+48) | USA300HOU_pUSA300HOUMR0014 → / ← USA300HOU_pUSA300HOUMR0015 | recombinase/hypothetical protein |
RA | CP000731 | 25,663 | Δ1 bp | 100% | coding (316/333 nt) | USA300HOU_pUSA300HOUMR0031 → | hypothetical protein |
RA | USA300TCH1516_ALE | 3,344 | A→T | 5.2% | intergenic (+28/‑362) | dnaN → / → USA300HOU_RS00015 | DNA polymerase III subunit beta/hypothetical protein |
RA | USA300TCH1516_ALE | 9,710 | T→C | 6.4% | intergenic (+15/+72) | gyrA → / ← nnrD | DNA gyrase subunit A/ADP‑dependent (S)‑NAD(P)H‑hydrate dehydratase |
RA | USA300TCH1516_ALE | 9,716 | T→C | 5.9% | intergenic (+21/+66) | gyrA → / ← nnrD | DNA gyrase subunit A/ADP‑dependent (S)‑NAD(P)H‑hydrate dehydratase |
RA | USA300TCH1516_ALE | 9,719 | G→A | 5.8% | intergenic (+24/+63) | gyrA → / ← nnrD | DNA gyrase subunit A/ADP‑dependent (S)‑NAD(P)H‑hydrate dehydratase |
RA | USA300TCH1516_ALE | 110,660 | T→A | 9.6% | I173I (ATT→ATA) | USA300HOU_RS00515 → | putative lipoprotein |
RA | USA300TCH1516_ALE | 111,512 | A→G | 32.2% | S194S (TCA→TCG) | USA300HOU_RS00520 → | putative lipoprotein |
RA | USA300TCH1516_ALE | 111,516 | C→A | 30.5% | Q196K (CAA→AAA) | USA300HOU_RS00520 → | putative lipoprotein |
RA | USA300TCH1516_ALE | 217,036 | T→A | 5.6% | intergenic (‑230/+23) | rocD2_1 ← / ← brnQ_1 | Ornithine aminotransferase 2/Branched‑chain amino acid transport system 2 carrier protein |
RA | USA300TCH1516_ALE | 512,643 | A→G | 19.9% | intergenic (+711/‑6052) | recR → / → speA_2 | Recombination protein RecR/Arginine decarboxylase |
RA | USA300TCH1516_ALE | 618,657 | T→C | 6.6% | D1253D (GAT→GAC) | sdrD → | Serine‑aspartate repeat‑containing protein D |
RA | USA300TCH1516_ALE | 740,322 | G→C | 6.7% | intergenic (+549/+39) | pitA_1 → / ← sle1_2 | Low‑affinity inorganic phosphate transporter 1/N‑acetylmuramoyl‑L‑alanine amidase sle1 |
RA | USA300TCH1516_ALE | 1,416,458 | A→T | 100% | I216N (ATT→AAT) | oppD_4 ← | Oligopeptide transport ATP‑binding protein OppD |
RA | USA300TCH1516_ALE | 1,435,065 | C→G | 7.6% | A141G (GCT→GGT) | dapH → | 2,3,4,5‑tetrahydropyridine‑2,6‑dicarboxylate N‑acetyltransferase |
RA | USA300TCH1516_ALE | 1,513,930 | A→T | 100% | L413F (TTA→TTT) | USA300HOU_RS07375 → | hypothetical protein |
RA | USA300TCH1516_ALE | 1,646,189 | G→C | 100% | A155G (GCA→GGA) | ypdF ← | Aminopeptidase YpdF |
RA | USA300TCH1516_ALE | 1,857,867 | C→T | 6.4% | L169L (TTG→TTA) | USA300HOU_RS09235 ← | hypothetical protein |
RA | USA300TCH1516_ALE | 1,987,374 | A→C | 6.7% | intergenic (‑437/+340) | USA300HOU_RS09895 ← / ← USA300HOU_RS09905 | hypothetical protein/hypothetical protein |
RA | USA300TCH1516_ALE | 2,010,363 | C→T | 100% | C146Y (TGT→TAT) | USA300HOU_RS10125 ← | Putative multidrug export ATP‑binding/permease protein |
RA | USA300TCH1516_ALE | 2,211,248 | A→T | 7.4% | intergenic (+241/+572) | USA300HOU_RS11275 → / ← yidC | hypothetical protein/Membrane protein insertase YidC |
RA | USA300TCH1516_ALE | 2,243,494 | A→T | 5.3% | intergenic (+72/+37) | USA300HOU_RS11475 → / ← pyrG | hypothetical protein/CTP synthase |
RA | USA300TCH1516_ALE | 2,243,499 | T→A | 7.0% | intergenic (+77/+32) | USA300HOU_RS11475 → / ← pyrG | hypothetical protein/CTP synthase |
RA | USA300TCH1516_ALE | 2,243,504 | A→T | 5.4% | intergenic (+82/+27) | USA300HOU_RS11475 → / ← pyrG | hypothetical protein/CTP synthase |
RA | USA300TCH1516_ALE | 2,279,705 | G→A | 100% | A943V (GCA→GTA) | ebh_3 ← | Extracellular matrix‑binding protein ebh |
RA | USA300TCH1516_ALE | 2,309,793:1 | +G | 5.6% | coding (76/1032 nt) | yfiZ_2 ← | putative siderophore transport system permease protein YfiZ |
RA | USA300TCH1516_ALE | 2,309,800 | Δ1 bp | 5.9% | coding (69/1032 nt) | yfiZ_2 ← | putative siderophore transport system permease protein YfiZ |
RA | USA300TCH1516_ALE | 2,372,407 | A→G | 5.1% | intergenic (+158/+34) | USA300TCH1516_02262 → / ← pbuG | hypothetical protein/Guanine/hypoxanthine permease PbuG |
RA | USA300TCH1516_ALE | 2,372,413 | C→G | 6.8% | intergenic (+164/+28) | USA300TCH1516_02262 → / ← pbuG | hypothetical protein/Guanine/hypoxanthine permease PbuG |
RA | USA300TCH1516_ALE | 2,372,419 | C→T | 5.8% | intergenic (+170/+22) | USA300TCH1516_02262 → / ← pbuG | hypothetical protein/Guanine/hypoxanthine permease PbuG |
RA | USA300TCH1516_ALE | 2,532,298 | A→T | 100% | T15T (ACA→ACT) | femA_3 → | Aminoacyltransferase FemA |
RA | USA300TCH1516_ALE | 2,608,825 | A→T | 5.4% | intergenic (+106/+154) | USA300TCH1516_02485 → / ← USA300HOU_RS13450 | hypothetical protein/hypothetical protein |
RA | USA300TCH1516_ALE | 2,744,213 | T→A | 7.6% | intergenic (+150/+43) | fda → / ← mqo2 | Fructose‑bisphosphate aldolase class 1/putative malate:quinone oxidoreductase 2 |
RA | USA300TCH1516_ALE | 2,744,226 | T→C | 5.5% | intergenic (+163/+30) | fda → / ← mqo2 | Fructose‑bisphosphate aldolase class 1/putative malate:quinone oxidoreductase 2 |
RA | USA300TCH1516_ALE | 2,774,969 | A→G | 5.3% | D739D (GAT→GAC) | clfB ← | Clumping factor B |
RA | USA300TCH1516_ALE | 2,774,975 | A→G | 6.1% | D737D (GAT→GAC) | clfB ← | Clumping factor B |
Unassigned new junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | CP000731 | 34 = | 387 (0.340) | 44 (0.040) | 16/146 | NT | 8.5% | intergenic (–/‑198) | –/repA | –/replication protein A |
? | CP000731 | 65 = | 597 (0.580) | intergenic (–/‑167) | –/repA | –/replication protein A | |||||
* | ? | CP000731 | = 64 | 674 (0.590) | 16 (0.020) +33 bp |
8/94 | NT | 7.5% | intergenic (–/‑168) | –/repA | –/replication protein A |
? | CP000731 | = 27041 | 0 (0.000) | intergenic (‑194/–) | USA300HOU_pUSA300HOUMR0033/– | partitioning protein/– | |||||
* | ? | CP000731 | = 4373 | 310 (0.270) | 234 (0.050) | 31/148 | NT | 21.6% | intergenic (+338/‑127) | USA300HOU_pUSA300HOUMR0006/cadR | hypothetical protein/cadmium binding protein |
? | NC_012417 | = 1986 | 1408 (0.170) | intergenic (+219/+107) | USA300HOU_RS14895/USA300HOU_RS14900 | hypothetical protein/hypothetical protein | |||||
* | ? | CP000731 | = 12916 | NA (NA) | 23 (0.020) | 17/148 | NT | NA | coding (410/675 nt) | USA300HOU_pUSA300HOUMR0016 | IS257 transposase |
? | CP000731 | = 12919 | NA (NA) | coding (413/675 nt) | USA300HOU_pUSA300HOUMR0016 | IS257 transposase | |||||
* | ? | CP000731 | 16941 = | NA (NA) | 23 (0.020) | 10/148 | NT | 100% | coding (121/675 nt) | USA300HOU_pUSA300HOUMR0021 | IS431 mec transposase |
? | CP000731 | 16948 = | 0 (0.000) | coding (114/675 nt) | USA300HOU_pUSA300HOUMR0021 | IS431 mec transposase | |||||
* | ? | CP000731 | = 17001 | NA (NA) | 27 (0.030) | 15/148 | NT | 100% | coding (61/675 nt) | USA300HOU_pUSA300HOUMR0021 | IS431 mec transposase |
? | CP000731 | = 17016 | 0 (0.000) | coding (46/675 nt) | USA300HOU_pUSA300HOUMR0021 | IS431 mec transposase | |||||
* | ? | CP000731 | 17008 = | NA (NA) | 24 (0.020) | 17/148 | NT | 100% | coding (54/675 nt) | USA300HOU_pUSA300HOUMR0021 | IS431 mec transposase |
? | CP000731 | 17011 = | 0 (0.000) | coding (51/675 nt) | USA300HOU_pUSA300HOUMR0021 | IS431 mec transposase | |||||
* | ? | NC_012417 | = 997 | 4013 (0.450) | 216 (0.030) | 45/138 | NT | 5.9% | intergenic (+9/+6) | USA300HOU_RS14890/USA300HOU_RS15665 | replication protein/hypothetical protein |
? | NC_012417 | = 1001 | 3435 (0.440) | intergenic (+13/+2) | USA300HOU_RS14890/USA300HOU_RS15665 | replication protein/hypothetical protein | |||||
* | ? | NC_012417 | 1993 = | NA (NA) | 141 (0.020) | 19/148 | NT | 7.0% | intergenic (+226/+100) | USA300HOU_RS14895/USA300HOU_RS14900 | hypothetical protein/hypothetical protein |
? | NC_012417 | 2021 = | 2029 (0.230) | intergenic (+254/+72) | USA300HOU_RS14895/USA300HOU_RS14900 | hypothetical protein/hypothetical protein | |||||
* | ? | USA300TCH1516_ALE | = 14186 | 290 (1.010) | 16 (0.060) | 14/142 | NT | 5.5% | intergenic (+87/‑563) | serS_1/ygaZ | Serine‑‑tRNA ligase/Inner membrane protein YgaZ |
? | USA300TCH1516_ALE | = 14200 | 292 (1.150) | intergenic (+101/‑549) | serS_1/ygaZ | Serine‑‑tRNA ligase/Inner membrane protein YgaZ | |||||
* | ? | USA300TCH1516_ALE | 36412 = | 191 (0.660) | 15 (0.060) | 9/146 | NT | 7.9% | coding (140/675 nt) | USA300HOU_RS00140 | hypothetical protein |
? | USA300TCH1516_ALE | = 76356 | NA (NA) | coding (142/246 nt) | USA300HOU_RS00140 | hypothetical protein | |||||
* | ? | USA300TCH1516_ALE | 42564 = | 341 (1.190) | 16 (0.070) +TACATTATAAAATACATATC |
8/120 | NT | 6.7% | coding (1402/1524 nt) | USA300TCH1516_00035 | hypothetical protein |
? | USA300TCH1516_ALE | = 2479065 | 251 (0.870) | intergenic (+21/+119) | USA300HOU_RS12765/hrtA_2 | hypothetical protein/Putative hemin import ATP‑binding protein HrtA | |||||
* | ? | USA300TCH1516_ALE | = 127978 | 302 (1.050) | 16 (0.060) | 10/144 | NT | 5.3% | intergenic (+198/+131) | lctP_1/spa | L‑lactate permease/Immunoglobulin G‑binding protein A |
? | USA300TCH1516_ALE | = 128000 | 301 (1.170) | intergenic (+220/+109) | lctP_1/spa | L‑lactate permease/Immunoglobulin G‑binding protein A | |||||
* | ? | USA300TCH1516_ALE | 161003 = | 335 (1.170) | 13 (0.060) | 8/124 | NT | 5.7% | intergenic (+17/+114) | deoB/phnE_1 | Phosphopentomutase/Phosphate‑import permease protein PhnE |
? | USA300TCH1516_ALE | 161059 = | 174 (0.780) | intergenic (+73/+58) | deoB/phnE_1 | Phosphopentomutase/Phosphate‑import permease protein PhnE | |||||
* | ? | USA300TCH1516_ALE | 221178 = | 281 (0.980) | 12 (0.050) | 9/146 | NT | 5.1% | intergenic (‑224/+50) | ipdC/ptsG_1 | Indole‑3‑pyruvate decarboxylase/PTS system glucose‑specific EIICBA component |
? | USA300TCH1516_ALE | 221218 = | 195 (0.740) | intergenic (‑264/+10) | ipdC/ptsG_1 | Indole‑3‑pyruvate decarboxylase/PTS system glucose‑specific EIICBA component | |||||
* | ? | USA300TCH1516_ALE | = 286957 | 235 (0.820) | 19 (0.080) | 10/140 | NT | 7.7% | intergenic (+36/‑303) | rihA/manR_1 | Pyrimidine‑specific ribonucleoside hydrolase RihA/Transcriptional regulator ManR |
? | USA300TCH1516_ALE | = 286973 | 252 (1.000) | intergenic (+52/‑287) | rihA/manR_1 | Pyrimidine‑specific ribonucleoside hydrolase RihA/Transcriptional regulator ManR | |||||
* | ? | USA300TCH1516_ALE | 318807 = | 83 (0.290) | 29 (0.110) | 9/150 | NT | 32.6% | intergenic (+170/‑58) | USA300HOU_RS01425/USA300TCH1516_00272 | hypothetical protein/hypothetical protein |
? | USA300TCH1516_ALE | = 1443642 | 42 (0.160) | intergenic (‑215/+138) | USA300TCH1516_01342/brnQ_3 | hypothetical protein/Branched‑chain amino acid transport system 2 carrier protein | |||||
* | ? | USA300TCH1516_ALE | 365029 = | 235 (0.820) | 13 (0.050) | 11/136 | NT | 5.7% | intergenic (+39/+66) | nupC_1/sglT | Nucleoside permease NupC/Sodium/glucose cotransporter |
? | USA300TCH1516_ALE | 365083 = | 233 (0.960) | intergenic (+93/+12) | nupC_1/sglT | Nucleoside permease NupC/Sodium/glucose cotransporter | |||||
* | ? | USA300TCH1516_ALE | = 365040 | 246 (0.860) | 15 (0.060) | 10/136 | NT | 6.4% | intergenic (+50/+55) | nupC_1/sglT | Nucleoside permease NupC/Sodium/glucose cotransporter |
? | USA300TCH1516_ALE | = 365070 | 233 (0.960) | intergenic (+80/+25) | nupC_1/sglT | Nucleoside permease NupC/Sodium/glucose cotransporter | |||||
* | ? | USA300TCH1516_ALE | 399691 = | 297 (1.030) | 16 (0.060) | 9/138 | NT | 6.5% | coding (1712/1713 nt) | efeU | Ferrous iron permease EfeU |
? | USA300TCH1516_ALE | 399718 = | 206 (0.830) | intergenic (+26/+66) | efeU/tatC2 | Ferrous iron permease EfeU/Sec‑independent protein translocase protein TatCy | |||||
* | ? | USA300TCH1516_ALE | 513404 = | NA (NA) | 23 (0.090) | 14/148 | NT | NA | intergenic (+1472/‑5291) | recR/speA_2 | Recombination protein RecR/Arginine decarboxylase |
? | USA300TCH1516_ALE | 513421 = | NA (NA) | intergenic (+1489/‑5274) | recR/speA_2 | Recombination protein RecR/Arginine decarboxylase | |||||
* | ? | USA300TCH1516_ALE | = 514606 | NA (NA) | 29 (0.110) | 21/146 | NT | NA | intergenic (+2674/‑4089) | recR/speA_2 | Recombination protein RecR/Arginine decarboxylase |
? | USA300TCH1516_ALE | = 514610 | NA (NA) | intergenic (+2678/‑4085) | recR/speA_2 | Recombination protein RecR/Arginine decarboxylase | |||||
* | ? | USA300TCH1516_ALE | 515124 = | NA (NA) | 24 (0.090) | 9/146 | NT | NA | intergenic (+3192/‑3571) | recR/speA_2 | Recombination protein RecR/Arginine decarboxylase |
? | USA300TCH1516_ALE | 515149 = | NA (NA) | intergenic (+3217/‑3546) | recR/speA_2 | Recombination protein RecR/Arginine decarboxylase | |||||
* | ? | USA300TCH1516_ALE | = 515130 | NA (NA) | 18 (0.070) | 8/146 | NT | NA | intergenic (+3198/‑3565) | recR/speA_2 | Recombination protein RecR/Arginine decarboxylase |
? | USA300TCH1516_ALE | = 515141 | NA (NA) | intergenic (+3209/‑3554) | recR/speA_2 | Recombination protein RecR/Arginine decarboxylase | |||||
* | ? | USA300TCH1516_ALE | = 515917 | NA (NA) | 10 (0.040) | 6/146 | NT | NA | intergenic (+3985/‑2778) | recR/speA_2 | Recombination protein RecR/Arginine decarboxylase |
? | USA300TCH1516_ALE | = 515920 | NA (NA) | intergenic (+3988/‑2775) | recR/speA_2 | Recombination protein RecR/Arginine decarboxylase | |||||
* | ? | USA300TCH1516_ALE | = 515946 | NA (NA) | 7 (0.030) | 6/146 | NT | NA | intergenic (+4014/‑2749) | recR/speA_2 | Recombination protein RecR/Arginine decarboxylase |
? | USA300TCH1516_ALE | = 515981 | NA (NA) | intergenic (+4049/‑2714) | recR/speA_2 | Recombination protein RecR/Arginine decarboxylase | |||||
* | ? | USA300TCH1516_ALE | 516988 = | NA (NA) | 32 (0.120) | 16/146 | NT | NA | intergenic (+5056/‑1707) | recR/speA_2 | Recombination protein RecR/Arginine decarboxylase |
? | USA300TCH1516_ALE | 517013 = | NA (NA) | intergenic (+5081/‑1682) | recR/speA_2 | Recombination protein RecR/Arginine decarboxylase | |||||
* | ? | USA300TCH1516_ALE | = 517212 | NA (NA) | 12 (0.050) | 9/146 | NT | NA | intergenic (+5280/‑1483) | recR/speA_2 | Recombination protein RecR/Arginine decarboxylase |
? | USA300TCH1516_ALE | = 517229 | NA (NA) | intergenic (+5297/‑1466) | recR/speA_2 | Recombination protein RecR/Arginine decarboxylase | |||||
* | ? | USA300TCH1516_ALE | 517277 = | NA (NA) | 24 (0.090) | 8/150 | NT | NA | intergenic (+5345/‑1418) | recR/speA_2 | Recombination protein RecR/Arginine decarboxylase |
? | USA300TCH1516_ALE | 517292 = | NA (NA) | intergenic (+5360/‑1403) | recR/speA_2 | Recombination protein RecR/Arginine decarboxylase | |||||
* | ? | USA300TCH1516_ALE | 517440 = | NA (NA) | 21 (0.080) | 13/146 | NT | NA | intergenic (+5508/‑1255) | recR/speA_2 | Recombination protein RecR/Arginine decarboxylase |
? | USA300TCH1516_ALE | 517458 = | NA (NA) | intergenic (+5526/‑1237) | recR/speA_2 | Recombination protein RecR/Arginine decarboxylase | |||||
* | ? | USA300TCH1516_ALE | = 557256 | NA (NA) | 33 (0.130) | 13/142 | NT | NA | intergenic (+314/‑1455) | USA300TCH1516_00504/USA300TCH1516_00505 | tRNA‑Ala/tRNA‑Ile |
? | USA300TCH1516_ALE | = 557260 | NA (NA) | intergenic (+318/‑1451) | USA300TCH1516_00504/USA300TCH1516_00505 | tRNA‑Ala/tRNA‑Ile | |||||
* | ? | USA300TCH1516_ALE | 646656 = | 325 (1.130) | 14 (0.060) | 10/140 | NT | 5.1% | intergenic (+10/‑577) | lipL/galK | Octanoyl‑[GcvH]:protein N‑octanoyltransferase/Galactokinase |
? | USA300TCH1516_ALE | 646692 = | 237 (0.940) | intergenic (+46/‑541) | lipL/galK | Octanoyl‑[GcvH]:protein N‑octanoyltransferase/Galactokinase | |||||
* | ? | USA300TCH1516_ALE | 671666 = | 167 (0.580) | 10 (0.040) | 3/142 | NT | 5.9% | intergenic (+291/‑97) | argS/nth_1 | Arginine‑‑tRNA ligase/Endonuclease III |
? | USA300TCH1516_ALE | = 891718 | 170 (0.670) | intergenic (+136/‑603) | USA300HOU_RS04385/rnmV_2 | hypothetical protein/Ribonuclease M5 | |||||
* | ? | USA300TCH1516_ALE | = 710532 | 299 (1.040) | 16 (0.060) | 11/142 | NT | 5.7% | intergenic (+25/+36) | tarA/tagH_1 | N‑acetylglucosaminyldiphosphoundecaprenol N‑acetyl‑beta‑D‑mannosaminyltransferase/Teichoic acids export ATP‑binding protein TagH |
? | USA300TCH1516_ALE | = 710552 | 264 (1.040) | intergenic (+45/+16) | tarA/tagH_1 | N‑acetylglucosaminyldiphosphoundecaprenol N‑acetyl‑beta‑D‑mannosaminyltransferase/Teichoic acids export ATP‑binding protein TagH | |||||
* | ? | USA300TCH1516_ALE | 760026 = | 292 (1.020) | 18 (0.080) | 12/132 | NT | 8.2% | coding (1674/1674 nt) | USA300HOU_RS03705 | Putative multidrug export ATP‑binding/permease protein |
? | USA300TCH1516_ALE | 760070 = | 162 (0.690) | intergenic (+44/+83) | USA300HOU_RS03705/mgrA | Putative multidrug export ATP‑binding/permease protein/HTH‑type transcriptional regulator MgrA | |||||
* | ? | USA300TCH1516_ALE | 805359 = | 275 (0.960) | 12 (0.050) | 7/126 | NT | 6.2% | intergenic (‑284/+57) | dtpT/queF | Di‑/tripeptide transporter/NADPH‑dependent 7‑cyano‑7‑deazaguanine reductase |
? | USA300TCH1516_ALE | 805402 = | 146 (0.650) | intergenic (‑327/+14) | dtpT/queF | Di‑/tripeptide transporter/NADPH‑dependent 7‑cyano‑7‑deazaguanine reductase | |||||
* | ? | USA300TCH1516_ALE | 854380 = | 268 (0.930) | 16 (0.060) | 15/148 | NT | 5.9% | intergenic (‑275/‑460) | USA300HOU_RS04170/zipA_1 | Epimerase family protein/Cell division protein ZipA |
? | USA300TCH1516_ALE | 854405 = | 263 (0.990) | intergenic (‑300/‑435) | USA300HOU_RS04170/zipA_1 | Epimerase family protein/Cell division protein ZipA | |||||
* | ? | USA300TCH1516_ALE | = 1058109 | 220 (0.770) | 19 (0.070) | 12/144 | NT | 8.2% | intergenic (+150/+57) | slyA_2/atl_1 | Transcriptional regulator SlyA/Bifunctional autolysin |
? | USA300TCH1516_ALE | = 1058143 | 225 (0.870) | intergenic (+184/+23) | slyA_2/atl_1 | Transcriptional regulator SlyA/Bifunctional autolysin | |||||
* | ? | USA300TCH1516_ALE | = 1120568 | 239 (0.830) | 15 (0.060) | 10/148 | NT | 6.1% | coding (56/276 nt) | USA300HOU_RS05550 | hypothetical protein |
? | USA300TCH1516_ALE | = 1120580 | 243 (0.920) | coding (68/276 nt) | USA300HOU_RS05550 | hypothetical protein | |||||
* | ? | USA300TCH1516_ALE | = 1166913 | 254 (0.880) | 17 (0.070) | 9/144 | NT | 6.2% | intergenic (+29/‑230) | USA300HOU_RS05790/fib_2 | hypothetical protein/Fibrinogen‑binding protein |
? | USA300TCH1516_ALE | = 1166922 | 283 (1.100) | intergenic (+38/‑221) | USA300HOU_RS05790/fib_2 | hypothetical protein/Fibrinogen‑binding protein | |||||
* | ? | USA300TCH1516_ALE | 1181842 = | 245 (0.850) | 13 (0.050) | 8/144 | NT | 6.1% | intergenic (+409/+65) | USA300HOU_RS05885/USA300TCH1516_01103 | hypothetical protein/tRNA‑Arg |
? | USA300TCH1516_ALE | 1181881 = | 178 (0.690) | intergenic (+448/+26) | USA300HOU_RS05885/USA300TCH1516_01103 | hypothetical protein/tRNA‑Arg | |||||
* | ? | USA300TCH1516_ALE | = 1205323 | 267 (0.930) | 25 (0.100) +AGCGAAGCC |
10/142 | NT | 9.6% | intergenic (‑204/‑365) | USA300HOU_RS15290/lspA | hypothetical protein/Lipoprotein signal peptidase |
? | USA300TCH1516_ALE | = 1443685 | NA (NA) | intergenic (‑258/+95) | USA300TCH1516_01342/brnQ_3 | hypothetical protein/Branched‑chain amino acid transport system 2 carrier protein | |||||
* | ? | USA300TCH1516_ALE | = 1457718 | NA (NA) | 22 (0.090) | 13/138 | NT | NA | intergenic (+103/+28) | USA300HOU_RS07235/ybjG | hypothetical protein/Putative undecaprenyl‑diphosphatase YbjG |
? | USA300TCH1516_ALE | = 1457722 | NA (NA) | intergenic (+107/+24) | USA300HOU_RS07235/ybjG | hypothetical protein/Putative undecaprenyl‑diphosphatase YbjG | |||||
* | ? | USA300TCH1516_ALE | = 1657692 | 205 (0.710) | 10 (0.040) | 9/130 | NT | 5.0% | intergenic (‑15/+37) | comGA/USA300HOU_RS08250 | ComG operon protein 1/putative metallo‑hydrolase |
? | USA300TCH1516_ALE | = 1657702 | 210 (0.900) | intergenic (‑25/+27) | comGA/USA300HOU_RS08250 | ComG operon protein 1/putative metallo‑hydrolase | |||||
* | ? | USA300TCH1516_ALE | = 1841996 | 219 (0.760) | 12 (0.050) | 9/134 | NT | 5.6% | intergenic (+36/+58) | htrA/tyrS | Serine protease Do‑like HtrA/Tyrosine‑‑tRNA ligase |
? | USA300TCH1516_ALE | = 1842015 | 225 (0.940) | intergenic (+55/+39) | htrA/tyrS | Serine protease Do‑like HtrA/Tyrosine‑‑tRNA ligase | |||||
* | ? | USA300TCH1516_ALE | = 2031786 | 266 (0.930) | 12 (0.060) +22 bp |
6/116 | NT | 5.8% | intergenic (+252/+238) | USA300HOU_RS10250/USA300HOU_RS10255 | hypothetical protein/hypothetical protein |
? | USA300TCH1516_ALE | = 2866873 | 272 (0.950) | intergenic (‑272/+181) | USA300HOU_RS14695/noc_2 | hypothetical protein/Nucleoid occlusion protein | |||||
* | ? | USA300TCH1516_ALE | 2062959 = | 321 (1.120) | 13 (0.050) | 7/132 | NT | 5.3% | intergenic (+40/+150) | pheA/sdcS | P‑protein/Sodium‑dependent dicarboxylate transporter SdcS |
? | USA300TCH1516_ALE | 2063001 = | 198 (0.840) | intergenic (+82/+108) | pheA/sdcS | P‑protein/Sodium‑dependent dicarboxylate transporter SdcS | |||||
* | ? | USA300TCH1516_ALE | = 2102579 | 220 (0.770) | 14 (0.050) | 9/146 | NT | 6.2% | intergenic (‑39/+277) | USA300HOU_RS10625/USA300HOU_RS10630 | hypothetical protein/hypothetical protein |
? | USA300TCH1516_ALE | = 2102583 | 220 (0.840) | intergenic (‑43/+273) | USA300HOU_RS10625/USA300HOU_RS10630 | hypothetical protein/hypothetical protein | |||||
* | ? | USA300TCH1516_ALE | 2207841 = | 283 (0.980) | 15 (0.060) | 9/142 | NT | 6.0% | intergenic (+202/+62) | rodA/USA300HOU_RS11255 | Peptidoglycan glycosyltransferase RodA/hypothetical protein |
? | USA300TCH1516_ALE | 2207874 = | 221 (0.870) | intergenic (+235/+29) | rodA/USA300HOU_RS11255 | Peptidoglycan glycosyltransferase RodA/hypothetical protein | |||||
* | ? | USA300TCH1516_ALE | 2256396 = | 283 (0.980) | 13 (0.050) | 6/132 | NT | 6.0% | intergenic (+49/+72) | deoD1/dps | Purine nucleoside phosphorylase DeoD‑type 1/General stress protein 20U |
? | USA300TCH1516_ALE | 2256443 = | 172 (0.730) | intergenic (+96/+25) | deoD1/dps | Purine nucleoside phosphorylase DeoD‑type 1/General stress protein 20U | |||||
* | ? | USA300TCH1516_ALE | = 2440052 | 206 (0.720) | 12 (0.050) | 7/136 | NT | 6.1% | intergenic (+13/+53) | USA300HOU_RS12570/malP | hypothetical protein/PTS system maltose‑specific EIICB component |
? | USA300TCH1516_ALE | = 2440086 | 196 (0.800) | intergenic (+47/+19) | USA300HOU_RS12570/malP | hypothetical protein/PTS system maltose‑specific EIICB component | |||||
* | ? | USA300TCH1516_ALE | 2442806 = | 216 (0.750) | 10 (0.040) | 8/128 | NT | 5.2% | intergenic (+3/+55) | glvR/USA300HOU_RS12585 | HTH‑type transcriptional regulator GlvR/hypothetical protein |
? | USA300TCH1516_ALE | 2442855 = | 191 (0.830) | intergenic (+52/+6) | glvR/USA300HOU_RS12585 | HTH‑type transcriptional regulator GlvR/hypothetical protein | |||||
* | ? | USA300TCH1516_ALE | = 2442821 | 232 (0.810) | 10 (0.040) | 8/128 | NT | 5.1% | intergenic (+18/+40) | glvR/USA300HOU_RS12585 | HTH‑type transcriptional regulator GlvR/hypothetical protein |
? | USA300TCH1516_ALE | = 2442838 | 191 (0.830) | intergenic (+35/+23) | glvR/USA300HOU_RS12585 | HTH‑type transcriptional regulator GlvR/hypothetical protein | |||||
* | ? | USA300TCH1516_ALE | 2483085 = | 346 (1.200) | 20 (0.080) | 11/136 | NT | 6.8% | intergenic (+5/‑158) | hssS/USA300HOU_RS12790 | Heme sensor protein HssS/putative HTH‑type transcriptional regulator |
? | USA300TCH1516_ALE | 2483126 = | 256 (1.050) | intergenic (+46/‑117) | hssS/USA300HOU_RS12790 | Heme sensor protein HssS/putative HTH‑type transcriptional regulator | |||||
* | ? | USA300TCH1516_ALE | 2492466 = | 299 (1.040) | 17 (0.070) | 10/138 | NT | 6.5% | intergenic (+9/+37) | yhfP/rimI_4 | Putative quinone oxidoreductase YhfP/Ribosomal‑protein‑alanine acetyltransferase |
? | USA300TCH1516_ALE | 2492499 = | 233 (0.940) | intergenic (+42/+4) | yhfP/rimI_4 | Putative quinone oxidoreductase YhfP/Ribosomal‑protein‑alanine acetyltransferase | |||||
* | ? | USA300TCH1516_ALE | = 2541819 | 263 (0.920) | 15 (0.060) | 10/136 | NT | 5.6% | intergenic (+78/‑422) | sbi/hlgA | Immunoglobulin‑binding protein sbi/Gamma‑hemolysin component A |
? | USA300TCH1516_ALE | = 2541837 | 280 (1.150) | intergenic (+96/‑404) | sbi/hlgA | Immunoglobulin‑binding protein sbi/Gamma‑hemolysin component A | |||||
* | ? | USA300TCH1516_ALE | = 2555354 | 249 (0.870) | 19 (0.070) | 6/142 | NT | 7.8% | intergenic (‑325/+544) | irtA/yfdG | Iron import ATP‑binding/permease protein IrtA/Prophage bactoprenol‑linked glucose translocase |
? | USA300TCH1516_ALE | = 2555358 | 231 (0.910) | intergenic (‑329/+540) | irtA/yfdG | Iron import ATP‑binding/permease protein IrtA/Prophage bactoprenol‑linked glucose translocase | |||||
* | ? | USA300TCH1516_ALE | 2561201 = | 247 (0.860) | 13 (0.050) | 11/132 | NT | 6.7% | intergenic (+30/+33) | USA300HOU_RS13195/cpdA | hypothetical protein/3',5'‑cyclic adenosine monophosphate phosphodiesterase CpdA |
? | USA300TCH1516_ALE | 2561237 = | 159 (0.670) | coding (804/807 nt) | cpdA | 3',5'‑cyclic adenosine monophosphate phosphodiesterase CpdA | |||||
* | ? | USA300TCH1516_ALE | 2863041 = | 262 (0.910) | 15 (0.060) | 11/142 | NT | 5.9% | intergenic (+11/+49) | USA300TCH1516_02707/USA300HOU_RS14670 | hypothetical protein/hypothetical protein |
? | USA300TCH1516_ALE | 2863075 = | 249 (0.980) | intergenic (+45/+15) | USA300TCH1516_02707/USA300HOU_RS14670 | hypothetical protein/hypothetical protein |