| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_012417 | 9 = | 270 (0.030) | 9 (0.000) +AAAAAAAAAA |
6/234 | NT | 6.7% | intergenic (–/‑271) | –/USA300HOU_RS14890 | –/replication protein |
| ? | NC_012417 | = 3123 | 0 (0.000) | intergenic (‑449/–) | USA300HOU_RS14900/– | hypothetical protein/– | |||||
TTTTTAAAATTTCTAGTATATCTGCATAGCTTACATTATCTATTTTCTTTTCTCTCCATGGGCGTTGTTTCCCACTTTTCGTCATATCTTTTAACGTTTTATTATCTTGATTTTCGGTTATACTTCTAGTAGTATTA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_012417/145‑9‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑AAAAAGACCCCCAGTATTATTTAAGATTCGACACCTTAATAATATAACTGGGGTTTTTTATTGTCAAATTTTCCTTTCACGCACAAAAACACGTTTAAACACTGTAATATCAACAGTTACAGCTATATATATAAAATCG < NC_012417/3123‑2985 |||||||||| TTTTTAAAATTTCTAGTATATCTGCATAGCTTACATTATCTATTTTCTTTTCTCTCCATGGACATTGTTTCCCACTTTTCGTCATATCTTTTAACGTTTTATTATCTTAATTTTCGGTTATACTTCTAGTAGTATTAAAAA < 4:644089/141‑1 TTTTAAAATTTCTAGTATATCTGCATAGCTTACATTATCTATTTTCTTTTCTCTCCATGGACGTTGTTTCCCACTTTTCGTCATATCTTTTAACGTTTTATTATCTTGATTTTCGGTTATACTTCTAGTAGTATTAAAAAA < 2:1128350/141‑1 TTTAAAATTTCTAGTATATCTGCATAGCTTACATTATCTATTTTCTTTTCTCTCCATGGGCGTTGTTTCCCACTTTTCGTCATATCTTTTAACGTTTTATTATCTTGATTTTCGGTTATACTTCTAGTAGTATTAAAAAAA < 2:1188509/141‑1 AATTTCTAGTATATCTGCATAGCTTACATTATCTATTTTCTTTTCTCTCCATGGGCGTTGTTTCCCACTTTTCGTCATATCTTTTAACGTTTTATTATCTTGATTTTCGGTTATACTTCTAGTAGTATTAAAAAAAAAAAA < 2:402539/141‑1 AATTTCTAGTATATCTGCATAGCTTACATTATCTATTTTCTTTTCTCACCATGAGCGTTGTTTCCCACTTTTCGTCATATCTTTTAACGTTTTATTATCTTGATTTTCGGTTATACTTCTAGTAGTATTATAAAAAAAAAA < 2:811365/141‑1 ATTTCTAGTATATCTGCATAGCTTACATTATCTATTTTCTTTTCTCTCCATGGGCGTTGTTTCCCACTTTTCGTCATATCTTTTAACGTTTTATTATCTTGATTTTCGGTTATACTTCTAGTAGTATTAAAAAAAAAAAAA < 2:1039942/141‑1 ATTTCTAGTATATCTGCATAGCTTACATTATCTATTTTCTTTTCTCTCCATGGGCGTTGTTTCCCACTTTTCGTCATATCTTTTAACGTTTTATTATCTTGATTTTCGGTTATACTTCTAGTAGTATTAAAAAAAAAAAAA < 2:1565671/141‑1 ATTTCTAGTATATCTGCATAGCTTACATTATCTATTTTCTTTTCTCTCCATGGGCGTTGTTTCCCACTTTTCGTCATATCTTTTAACGTTTTATTATCTTGATTTTCGGTTATACTTCTAGTAGTATTAAAAAAAAAAAAA < 2:170633/141‑1 TTCTAGTATATCTGCATAGCTTACATTATCTATTTTCTTTTCTCTCCATGGGCGTTGTTTCCCACTTTTCGTCATATCTTTTAACGTTTTATTATCTTGATTTTCGGTTATACTTCTAGTAGTATTAAAAAAAAAAAAAAA < 4:210241/141‑1 TTCTAGTATATCTGCATAGCTTACATTATCTATTTTCTTTACACTCAAAGGGCGTCGCTTCCCACTGTTCGTCATATCTTTTAACCTTTTATTACCCTGATTTTCGGTTATACTTGTATTCGTATTAAAAAAAAAAAAAAA < 2:77314/141‑1 TAGTATATCTGCATAGCTTACATTATCTATTTTCTTTACACTCCATGGGCGTTGTTTCCCACTTTTCGTCATATCTTTTAACGTTTTATTATCTTGATTTTCGGTTATACTTCTAGTAGTATTAAAAAAAAAAAAAAAAGA < 2:1076357/141‑1 TATCTGCATAGCTTACATTATCTATTTTCTTTTCTCTCCATGGGCGTTGTTTCCCACTTTTCGTCATATCTTTTAACGTTTTATTATCTTGATTTTCGGTTATACTTCTAGTAGTATTATATAAAAAAAAAAAAGACCCCC < 2:950355/141‑1 ATCTGCATTGCTTACATTATCTATTTTCTTTTCTCTCCATGGGCGTTGTTTCCCACTTTTCGACATATCTTTTAACGTTTTATTATCTTGATTTTCGGTTATCCTTCTAGTAGTATTATAAAAAAAAAAAAAAGACCCCCA < 2:1159586/141‑1 ATCTGCATAGCTTACATTATCTATTTTCTTTTCTCTCCATGGGCGTTGTTTCCCACTTTTCGTCATATCTTTTAACGTTTTATTATCTTGATTTTCGGTTATACTTCTAGTAGTATTAAAAAAAAAAAAAAAAGACCCCCA < 4:37592/141‑1 TCTGCATAGCTTACATTATCTATTTTCTTTTCTCTCCATGGGCGTTGTTTCCCACTTTTCGTCATATCTTTTAACGTTTTATTATCTTAATTTTCGGTTATACTTCTTGTAGTATAAAAAAAAAAAAAAAAAGACCCCCAG < 4:248049/141‑1 TCTGCATAGCTTACATAATCTATTTTCTTTTCTCTCCATGGGCTTTGTTTCCCACTTTTCGTCATATCTTTTAACGTTTTATTATCTTGATTTTCAGTTATACTTCTATTAGTATAAAAAAAAAAAAAAAAAGACCCCCAG < 2:806502/141‑1 aTGCATAGCTTACAAAATATATTTTCTATTCTCTCCATGGGCGTTGTATCCCACTTTTCGTCATATCTTTTAACGTTTTATTATCTTGATTTTCGGTTATACTTCTAGTAGTATTAAAAAAAAAAAAAAAAGACCCCCAGT < 4:587878/140‑1 CTGCATAGCTTACATTATCTATTTTCTTTTCTCTCCATGGGCGTTGTTTCCCACTTTTCGTCATATCTTTTAACGTTTTATTATCTTGATTTTCGGTTATACTTCTATTAGTATTAAAAAAAAAAAAAAAAGACCCCCAGT < 4:701967/141‑1 TTTCTCTCCATGATCGTTGTTTTACGCTTGACGACATATCTTTTAACGTTTTATTAGCTTGATTTTCTGTTATACTCCTATTATTATTAAAAAAAAAAAAAAAAGACCCCCAGTATTATTTAAGATTCGACACCTTAATAA < 2:20940/141‑1 ttacacAAAGAAAAAGACCCCCAGTATTATTTAAGATTCGACACCTTAATAATATAACTGGGGTTTTTTATTGTCAAATTTTCCTTTCACGCACAAAAACACGTTTAAACACTGTAATATCAACAGTTACAGCTATATATA < 2:480783/135‑1 AAAAAAAGACCCCCAGTATTATTTAAGATTCGACACCTTAATAATATAACTGGGGTTTTTTATTGTCAAATTTTCCTTTCACGCACAAAAACACGTTTAAACACTGTAATATCAACAGTTACAGCTATATATATAAAATCG < 4:266805/141‑1 |||||||||| TTTTTAAAATTTCTAGTATATCTGCATAGCTTACATTATCTATTTTCTTTTCTCTCCATGGGCGTTGTTTCCCACTTTTCGTCATATCTTTTAACGTTTTATTATCTTGATTTTCGGTTATACTTCTAGTAGTATTA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_012417/145‑9‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑AAAAAGACCCCCAGTATTATTTAAGATTCGACACCTTAATAATATAACTGGGGTTTTTTATTGTCAAATTTTCCTTTCACGCACAAAAACACGTTTAAACACTGTAATATCAACAGTTACAGCTATATATATAAAATCG < NC_012417/3123‑2985 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |