| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | = 802141 | 169 (0.760) | 3 (0.010) | 3/224 | NT | 1.7% | intergenic (+382/+242) | USA300HOU_RS03915/USA300HOU_RS03920 | Putative 5'(3')‑deoxyribonucleotidase/Putative lipid kinase |
| ? | USA300TCH1516_ALE | = 802168 | 196 (0.970) | intergenic (+409/+215) | USA300HOU_RS03915/USA300HOU_RS03920 | Putative 5'(3')‑deoxyribonucleotidase/Putative lipid kinase | |||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
AACTCATGCATTCATATTTTTAAGTACACATTAGCTGTGACTAATGATAAAGAATCGCTACATAATCAATCATTAGTCGTTCTTTATCATTTCCGTCCCGCTCTCAATAAATGTTAGTTTATCTTATTATTATAAATCGGATGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/801998‑802141‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aaatcggatgaCGTGTAATCTGCCATAGATTAACACATTCATCCGATTTATAATAATAAGATAAACTAACATTTATTGAGAGCGGGACGGAAATGATAAAGAACGACTAATGATTGATTATGTAGCGATTCTTTATCATTAGTC < USA300TCH1516_ALE/802168‑802036 AACTCATGCATTCATATTTTTAAGTACACATTAGCTGTGACTAATTATAAAGAATCGCTACATAATCAATCATTAGTCGTTCTTTATCATTTCCGTCCCGCTCTCAATAAATGTTAGTTTATCTTATTATTATA < 1:571888/134‑1AACTCATGCATTCATATTTTTAAGTACACATTAGCTGTGACTAATGATAAAGAATCGCTACATAATCAATCATTAGTCGTTCTTTATCATTTCCGTCCCGCTCTCAATAAATGTTAGTTTATCTTATTATTATA > 1:1976482/1‑134 ACTCATGCATTCATATTTTTAAGTACACATTAGCTGTGACTCATGATAAAGAATCGCTACATAATCAAACATTAGTAGACTTGTAAGTGTTCCGTCCCGCTCTCAATCAATGTTAGTTTATCTTATTATTATAA > 2:1301248/1‑134 ACTCATGCATTCATATTTTTAAGTACACATTAGCTGTGACTAATGATAAAGAATCGCTACATAATCAATCATTAGTCGTTCTTTATCATTTCCGTCCCGCGCTCAATAAATGTTAGTTGATCTTATTATTTTAc > 2:2570362/1‑133 ACTCATGCATTCATATTTTTAAGTACACATTAGCTGTGACTAATGATAAAGAATCGCTACATAATCAATCATTAGTCGTTCTTTATCATTTCCGTCCAGCTCTCAATAAATGTTAGTTTATCTTATTATTATAA > 1:590385/1‑134 CTCATGCATTCATATTTTTAAGTACACATTAGCTGTGACTAATGATAAAGAATCGCTACATAATCAATCATTAGTCGTTCTTTATCATTTCCGTCCCGCTCTCAATAAATGTTAGTTTATCTTATTATTATAAA > 1:1133101/1‑134 CTCATGCATTCATATTTTTAAGTACACATTAGCTGTGACTAATGATAAAGAATCGCTACATAATCAATCATTAGTCGTTCTTTATCATTTCCGTCCCGCTCTCAATAAATGTTAGTTTATCTTATTATTATAAA < 2:145227/134‑1 CTCATGCATTCATATTTTTAAGTACACATTAGCTGTGACTAATGATAAAGAATCGCTACATAATCAATCATTAGTCGTTCTTTATCATTTCCGTCCCGCTCTCAATAAATGTTAGTTTATCTTATTATTATAAA > 2:1451512/1‑134 CTCATGCATTCATATTTTTAAGTACACATTAGCTGTGACTAATGATAAAGAATCGCTACATAATCAATCATTAGTCGTTATTTATCATTTCCGTCCCGCTCTCAATAAATGTTAGTTTATCTTATTATTATAAA > 1:2623104/1‑134 CATGCCTTCATATTTTTAATTTCTCTTTATCTGTGACTAATTATATATTTTCGTTACATAATCAATCATTAGACGTTCTTTATCATTTCCGTCCCGCTCTCAATAAATGTTAGTTTATCTTATTATTATAAATC < 1:1489064/134‑1 CATGCATTCATATTTTTAAGTACACATTAGCTGTGACTAATGATAAAGAATCGCTACATAATCAATCATTAGTCGTTCTTTATCATTTCCGTCCCGCTCTCAATAAATGTTAGTTTATCTTATTATTATAAATC < 1:2138982/134‑1 ATGCATTCATATTTTTAAGTACACATTAGCTGTGACTAATGATAAAGAATCGCTACATAATCAATCATTAGTCGTTCTTTATCATTTCCGTCCCGCTCTCAATAAATGTTAGTTTATCTTATTATTATAAATCG > 2:937835/1‑134 ATGCATTCATATTTTTAAGTACACATTAGCTGTGACTAATGATAAAGAATCGCTACATAATCAATCATTAGTCGTTCTTTATCATTTCCGTCCCGCTCTCAATAAATGTTAGTTTATCTTATTATTATAAATCG < 1:450630/134‑1 TGCATTCATATTTTTAAGTACACATTAGTTGTGACTAATGATAAAGAATCGCTACATAATCAATCATTAGTCGTTCTTTATCATTTCCGTCCCGCTCTCAATAAATGTTAGTTTATCTTATTATTATAAATCGG < 1:2698914/134‑1 TGCATTCATATTTTTAAGTACACATTAGCTGTGACTAATGATAAAGAATCGCTACATAATCAATCATTAGTCGTTCTTTATCATTTCCGTCCCGCTCTCAATAAATGTTAGTTTATCTTATTCTTATAAATCGG > 2:370500/1‑134 GCATTCATATTTTTAAGTACACATTAGGTGTGACTAATGATAAAGAATCGCTACATAATCCATCATTAGTCGTTCTTTATCATTTCCGTCCCGCTCTCAATAAATGTTAGTTTATCTTATTATTATAAATCGGA < 2:2532397/134‑1 GCATTCATATTTTTAAGTACACATTAGCTGTTACTAATGATAAAGAATCGCTACATAATCAATCATTAGTCGTTCTTTATCATTTCCGTCCCGCTCTCAATAAATGTTAGTTTATCTTATTATTATAAATCGGA < 1:1265979/134‑1 GCATTCATATTTTTAAGTACACATTAGCTGTGACTAATGATAAAGAATCGCTACATAATCAATCATTAGTCGTTCTTTATCATTTCCGTCCCGCTCTCAATAAATGTTAGTTTATCTTATTATTATAAATCGGA < 2:1368584/134‑1 CATTCATATTTTTAAGTACACATTAGCTGTGACTAATGATAAAGAATCGCTACATAATCAATCATTAGACGTTCTTTATCATTTCCGTCCCGCTCTCAATAAATGTTAGTTTATCTTATTATTATAAATCGGAT < 1:498601/134‑1 TTCATATTTTTAAGTACACATTAGCTGTGACTAATGATAAAGAATCGCTATATAATCAATCATTAGTCGTTCTTTATCATTTCTGTCCCGCTCTCAATAAATGTTAGTTTATCTTATTATTATAAATCGGATGA < 2:683049/134‑1 TTCATATTTTTAAGTACACATTAGCTGTGACTAATGATAAAGAATCGCTACATAATCATTCATTAGTCGTTCTTTATCATTTCCGTCCCGCTCTCAATAAATGTTAGTTTATCTTATTATTATAAATCGGATGA < 1:1555871/134‑1 TTCATATTTTTAAGTACACATTAGCTGTGACTAATGATAAAGAATCGCTACATAATCAATCATTAGTCGTTCTTTATCATTTCCGTCCCGCTCTCAATAAATGTTAGTTTATCTTATTATTATAAATCGGATGA < 2:2696281/134‑1 TTCATATTTTTAAGTACACATTAGCTGTAACTAATGATAAAGAATCGCTACATAATCAATCATTAGTCGTTCTTTATCATTTCCGTCCCGCTCTCAATAAATGTTAGTTTATCTTATTATTATAAATCGGATGA < 2:2223326/134‑1 TATTTTTAAGTACACATTAGCTGTGACTAATGATAAAGAATCGCTACATAATCAATCATTAGTCGTTCTTTATCATTTCCGTCCCGCTCTCAATAAATGTTAGTATATCTTATTATTATAATTGTGATGAtagt > 2:1857685/1‑130 ATGATAAAGAATCGCTACATAATCAATCATTAGTCGTTCTTTATCATTTCCGTCCCGCTCTCAATAAATGTTAGTTTATCTTATTATTATAAATCGGATGACGTGTAATCTGCCATAGATTAACACATTCATCC < 1:1500704/134‑1 cgtTACATAATCAATCATTTGTCGTTCTTTATGATTTCCGTCCCGTTCTCAATAAATGTTAGTTTATCTTATTATTATAAATCGGATGACGTGTAATCTGCCATAGATTAACACATTCATCCGATTTATAATAA < 2:1406060/131‑1 cttcTATCATAAATCGGATGACGTGTAATCTGCCATAGATTAACACATTCATCCGATTTATAATAATAAGATAAACTAACATTTATTGAGAGCGGGACGGAAATGATAAAGAACGACTAATGATTGATTATGTA < 1:831904/130‑1 AAATCGGATGACGTGTAATCTGCCATAGATTATCACATTCATCCGATTTATAATAATAAGATAAACTAACATTTATTGAGAGCGGGACGGAAATGATAAAGAACGACTAATGATTGATTATGTAGCGATTCTTT > 2:2556252/1‑134 AAATCGGATGACGTGTAATCTGCCATAGATTAACACATTCATCCGATTTATAATAATAAGATAAACTAACATTTATTGAGAGCGGGACGGAAATGATAAAGAACGACTAATGATTGATTATGTAGCGATTCTTT > 2:2855644/1‑134 tctGATGACGTGTAATCTGCCATAGATTAACATATTCATTCGATTTATAATAATAAGATAAACTAACATTTATTGAGAGCGGGACGGAAATGATAAAGAACGACTAATGATTGATTATGTAGCGATTCTTTATC < 2:864906/131‑1 TCGTATGACGTTTAATCTGCCATAGATTAACACATTCATCCGATTTATAATAATAAGATAAACTAACATTTATTGAGAGCGGGACGGAAATGATAAAGAACGACTAATGATTGATTATGTAGCGATTCTTTATC < 2:2098476/134‑1 TCGGATGACGTGTAATCTGCCATAGATTAACACATTCATCCGATTTATAATAATAAGATAAACTAACATTTATTGAGAGCGGGACGGAAATGATAAAGAACGACTAATGATTGATTATGTAGCGATTCTTTATC > 2:1060717/1‑134 TCGGATGACGTGTAATCTACCATAGATTAACACATTCATCCGATTTATAATAATAAGATAAACTAACATTTATTGAGAGCGGGACGGAAATGATAAAGAACGACTAATGATTGATTATGTAGCGATTCTTTATC < 2:2098489/134‑1 aGGATGACGTGACAGCTGCCATAGAGTAACACATTCATCCGAGTTATAATAATAAGATAAACTAACATTTATTGAGAGCGTGACGGAAATGATAAAGAACGACTAATGATTGATTATGTAGCGATTCTTTATCA < 1:1318432/133‑1 GGATGACGTGTAATCTGCCATAGATTAACACATTCATCCGATTTATAATAATTAGATAAACTAACATTTATTGAGAACGGAAAAAAAATAATAAAGAACAAATAATGAATGATTATGAAGCGATTCTTTATCAT > 1:451483/1‑134 GGATGACGTGTAATCTGCCATAGATTAACACATTCATCCGATTTATAATAATAAGATAAACTAACATTTATTGAGAGCGGGACGGAAATGATAAAGAACGACTAATGATTGATTATGTAGCGATTCTTTATCAT < 1:945667/134‑1 GGATGACGTGTAATCTGCCATAGATTAACACATTCATCCGATTTATAATAATAAGATAAACTAACATTTATTGAGAGCGGGACGGAAATGATAAAGAACGACTAATGATTGATTATGTAGCGATTCTTTATCAT < 1:2759393/134‑1 GATGACGTGTAATCTGCCATAGATTAACACATTCATACGAAATATAATAAAAAGATAAACTAACATTTATTGAGAGCGGGACGGAAATGATAAAGAACGACTAATGATTGATTATGTAGCGATTCTTTATCATT > 1:1017964/1‑134 ATGACGTGTAATCTGCCATAGATTAACACATTCATCCGATTTATAATAATAAGATAAACTAACATTTATTGAGAGCGGGACGGAAATGATAAAGAACGACTAATGATTACCAGTATAGCGATTCTTTATCATTA > 2:1873632/1‑134 ATGACGTGTAATCTGCCATAGATTAACACATTCATCCGATTTATAATAATAAGATAAACTAACATTTATTGAGAGCAGGACGGAAATGATAAAGAACGACTAATGATTGATTATGTAGCGATTCTTTATCATTA > 1:2291523/1‑134 ATGACGTGTAATCTGCCATAGATTAACACATACATCCGATTTATAATAATAAGATAAACTAACATTTATTAAGAGCGGGACGGAAATGATAAAGAACGACTAATGAATGATTATATAGCAATTCTTTACCATTA > 2:134624/1‑134 ACGTGTAATCTGCCATAGATTAACACATTCATCCGATTTATAATAATAAGATAAACTAACATTTATTGAGAGCGGGACGGAAATGATAAAGAACGACTAATGATTGATTATGTAGCGATTCTTTATCATTAGTC < 2:1261226/134‑1 AACTCATGCATTCATATTTTTAAGTACACATTAGCTGTGACTAATGATAAAGAATCGCTACATAATCAATCATTAGTCGTTCTTTATCATTTCCGTCCCGCTCTCAATAAATGTTAGTTTATCTTATTATTATAAATCGGATGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/801998‑802141‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aaatcggatgaCGTGTAATCTGCCATAGATTAACACATTCATCCGATTTATAATAATAAGATAAACTAACATTTATTGAGAGCGGGACGGAAATGATAAAGAACGACTAATGATTGATTATGTAGCGATTCTTTATCATTAGTC < USA300TCH1516_ALE/802168‑802036 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |