New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	512620 =	48 (1.890)	12 (0.730) +TTATCTTGTCCATTTTATTTTTTAACCAAAATTTGATTAAAAAAC	11/170	NT	31.5%	intergenic (+688/‑6075)	recR/speA_2	Recombination protein RecR/Arginine decarboxylase
	?	USA300TCH1516_ALE	= 517814	32 (1.260)					intergenic (+5882/‑881)	recR/speA_2	Recombination protein RecR/Arginine decarboxylase

GGCGTTCAGTACAGATGACAAAGGTGTAATTTTTACTGTTGTTAAGCAGTTTGAAAGCCTGTATAGTATTTATTTGTTGAGGCAAACAAA‑ACAACTCAACTTAAGAAATAACTTGAATTACTAACGAAAATTAATTTT‑AAAAAGTTATTGACTTAAATGTTAATAAAATGTATAATTAATTCTTGTCGGTAAGAAAAATGAACATTGA‑AAACTGAATGACAATATGTCAACGTTAATTCCAAAAAACGTAACTATAAGTTACAAACATTATTTAG  >  USA300TCH1516_ALE/512482‑512756                                                                                                                                             |                                                                                                                                          gtcacacctgttcccatgccgaacacagaagttaagctccttagcgtcgatggcagtcgaacttacgttccgctagagtagaacgttggcacgtagttttgtaagcaaactttgcttgaaaactaaaaaagacaagataaa                                                                                                                                           <  2:267922‑M1/1‑1 (MQ=255)  tcacacctgttcccatgccgaacacagaagttaagctccttagcgtcgatggtagtcgaacttacgttccgctagagtagaacgttgccaggcagttttttaatcaaattttggttaaaaaataaaatggacaagataaaa                                                                                                                                          >  1:255208‑M1/140‑141 (MQ=255)   cGTTCAGTACAGATGACAAAGGTGTAATTTTTACTGTTGTTAAGCAGTTTGAAAGCCTGTATAGTATTTATTTGTTGAGGCAAACAAA‑ACACCTAAACTAAGGAAGTAACTTGAATTACTAACGAAAATTAATTTT‑aaaaa                                                                                                                                       >  2:219270/1‑141 (MQ=255)   cGTTCAGTACAGATGACAAAGGTGTAATTTTTACTGTTGTTAAGCAGTTTGAAAGCCTGTATAGTATTTATTTGTTGAGGCAAACAAA‑ACAACTCAACTTAAGAAATAACTTGAATTACTAACGAAAATTAATTTT‑aaaaa                                                                                                                                       >  1:139085/1‑141 (MQ=255)    gTTCAGTACAGATTACAAAGGTGTAATTTTTACTGTTGTGAAGCAGTTTGAAAGCCTGTATAGTATTTATTTGTTGAGGCAAACAAA‑ACAACTCAACTTAAGAAATAACTTGAATTACTAACGAAAATTAATTTT‑AAAAAg                                                                                                                                      <  1:107354/141‑1 (MQ=255)        aGTACAGATGACAAAGGTGTAATTTTTACTGTTGTTAAGCAGTTTGAAAGCCTGTATAGTATTTATTTTTTGAGGCAAACAAA‑ACAACTCAACTTAAGAAATAACTTGAATTACTAACGAAAATTCATTTT‑ACAAAGTCAt                                                                                                                                  >  2:104460/1‑141 (MQ=255)         gTACAGATGACAAAGGTGTAATTTTTACTGTTGTTAAGCAGTTTGAAAGCCTGTATAGTATTTATTTGTTGAGGCAAACAAA‑ACAACTCAACTTAAGAAATAACTTGAATTACTAACGAAAATTAATTTT‑AAAAAGTTAtt                                                                                                                                 >  1:42957/1‑141 (MQ=255)         gTACAGATGACAAAGGTGTAATTTTTACTGTTGTTAAGAAGTTTGAAAGCCTGTATAGTATTTATTTGTTGAGGCAAACAAA‑ACAACTCAACTTAAGAAATAACTTGAATTACTAACGAAAATTAATTTT‑AAAAAGTTAtt                                                                                                                                 <  2:294375/141‑1 (MQ=255)           aCAGATGACAAAGGTGTAATTTTTACTGTTGTTAAGCAGTTTGAAAGCCTGTATAGTATTTATTTGTTGAGGCAAACAAA‑ACAACTCAACTTAAGAAATAACTTGAATTACTAACGAAAATTAATTTT‑AAAAAGTTATTGa                                                                                                                               <  1:5238/141‑1 (MQ=255)             aGATGACAAAGGTGTAATTTTTACTGTTGTTAAGCAGTTTGAAAGCCTGTATAGTATTTATTTGTTGAGGCAAACAAA‑ACAACTCAACTTAAGAAATAACTTGAATTACTAACGAAAATTAATTTT‑AAAAAGTTATTGACt                                                                                                                             <  1:295074/141‑1 (MQ=255)                atgacgaaaaaagaagttaagatccttagagtcgatggtagtcgaacttacgttacgctagaatagaacgttgacaggcagttttttaataaaattttggttaaaaaataaaatggacaagataaAAAAAGTTATTGACtt                                                                                                                            >  2:263040‑M1/126‑141 (MQ=255)                 tgccgaacacagaagttaagctccttagcgtcgatggtagtcgaacttacgttccgctagagtagaacgttgccaggcagttttttaatcaaattttggttaaaaaataaaatggacaagataaAAAAAGTTATTGACTTa                                                                                                                           >  1:259481‑M1/125‑141 (MQ=255)                  aCAAAGGTGTAATTTTTACTGTTGTTAAGCAGTTTGAAAGCCTGTATAGTATTTATTTGTTGAGGCAAACAAA‑ACAACTCAACTTAAGAAATAACTTGAATTACTAACGAAAATTAATTTT‑AAAAAGTTATTGACTTAAAt                                                                                                                        >  1:157103/1‑141 (MQ=255)                   cAAAGGTGTAATTTTTACTGTTGTTAAGCAGTTTGAAAGCCTGTATAGTATTTATTTGTTGAGGCAAACAAA‑ACAACTCAACTTAAGAAATAACTTGAATTACTAACGAAAATTAATTTT‑AAAAAGTTATTGACTTAAATg                                                                                                                       >  1:51021/1‑141 (MQ=255)                      aGGTGTAATTTTTACTGTTGTTAAGCAGTTTGAAAGCCTGTATAGTATTTATTTGTTGAGGCAAACAAATTCATCT‑TACTTTAGCAATGACTTGAACTACTAACGAAAATTAATTTT‑AAAAAGTTATTGACTTAAATTTta                                                                                                                    >  1:43248/1‑141 (MQ=255)                      aGGTGTAATTTTTACTGTTGTTAAGCAGTTTGAAAGCCTGTATAGTATTTATTTGTTGAGGCAAACAAA‑ACAACTCAACTTAAGACATAACTTGAATTACTAACGAAAATTAATTTT‑AAAAAGTTATTGAATTAAAAGTta                                                                                                                    >  2:11410/1‑141 (MQ=255)                         tgtAATTTTTACTGTTGTTAAGCAGTTTGAAAGCCTGTATAGTATTTATTTGTTGATGCAAACAAA‑ACAACTCAACTTAAGAAATAACTTGAATTACTAACGAAAATTAATTTT‑AAAAAGTTATTGACTTAAATGTtaata                                                                                                                 >  2:286974/1‑141 (MQ=255)                             aTTTTTACTGTTGTTAAGCAGTTTGAAAGCCTGTATAGTATTTATTTGTTGAGGCAAACAAA‑ACAACTCAACTTAAGAAATAACTTGAATTACTAACGAAAATTAATTTT‑AAAAAGTTATTGACTTAAATGTTAATAAAAt                                                                                                             >  1:278659/1‑141 (MQ=255)                             aTTTTTACTGTTGTTAAGCAGTTTGAAAGACTGTATAGTATTTATTTGTTGAGGCAAACAAA‑ACAACTCAACTTAAGAAATAACTTGAATTACTAACGAAAATTAATTTT‑AAAAAGTTATTGACTTAAATGTTAATAAAAt                                                                                                             <  1:87793/141‑1 (MQ=255)                                   agctccttagcgtcgatggtagtcgaacttacgttccgctagagtagaacgttgccaggcagttttttaatcaaattttggttaaaaaataaaatggacaagataaAAAAAGTTATTGACTTAAATGTTGATAAAATGtat                                                                                                         <  1:263360‑M1/35‑1 (MQ=255)                                   aCTGTTGTTAAGCAGTTTGAAAGCCTGTATAGTATTTATTTGTTGAGGCAAACAAA‑ACAACTCAACTTAAGAAATAACTTGAATTACTAACGAAAATTAATTTT‑AAAAAGTTATTGACTTAAATGTTAATAAAATGTAtaa                                                                                                       >  1:81392/1‑141 (MQ=255)                                    cTGTTGTTAAGCAGTTTGAAAGCCTGTATAGTATTTATTTGTTGAGGCAAACAAA‑ACAACTCAACTTAAGAAATAACTTGAATTACTAACGAAAATTAATTTT‑AAAAAGTTATTGACTTAAATGTTAATAAAATGTAtaaa                                                                                                      >  2:247095/1‑140 (MQ=255)                                     cttcttagcgtcgatggtagtcgaacttacgttccgctagagtagaacgttgccaggcagttttttaatcaaattttggttaaaaaataaaatggacaagataaAAAAAGTTATTGACTTAAATGTTGATAAAATGTAtaa                                                                                                       >  1:111218‑M1/105‑141 (MQ=255)                                      gttgttAAGCAGTTTGAAAGCCTGTATAGTATTTATTTGTTGAGGCAAACAAA‑ACAACTCAACTTAAGAAATAACTTGAATTACTAACGAAAATTAATTTT‑AAAAAGTTATTGACTTAAATGTTAATAAAATGTAtaatta                                                                                                    >  1:256198/1‑141 (MQ=255)                                         gttAAGCAGTTTGAAAGCCTGTATAGTATTTATTTGTTGAGGCAAACAAA‑ACAACTCAACTTAAGAAATAACTTGAATTACTAACGAAAATTAATTTT‑AAAAAGTTATTGACTTAAATGTTAATAAAATGTATaattaatt                                                                                                 <  1:74462/141‑1 (MQ=255)                                         gttAAGCAGTTTGAAAGCCTGTATAGTATTTATTTGTTGAGGAAAACAAA‑ACAACTCAACTTAAGAAATAACTTGAATTACTAACGAAAATTAATTTT‑AAAAAGTTATTGACTTAAATGTTAATAAAATGTATaattaatt                                                                                                 <  2:180974/141‑1 (MQ=255)                                            gcgtcgatggtagtcgaacttacgttccgctagagtagaacgttgccaggcagttttttaatcaaattttggttaaaaaataaaatggacaagataaAAAAAGTTATTGACTTAAATGTTGATAAAATGTATAATTAATTc                                                                                                <  1:230505‑M1/44‑1 (MQ=255)                                             gggaggttGAAAGCCTGTATAGTATTTATTTGTTGAGGCAAACAAA‑ACAACTCAACTTAAGAAATAACTTGAATTACTAACGAAAATTAATTTT‑AAAAAGTTATTGACTTAAATGTTAATAAAATGTATAATTAATTCTTg                                                                                             >  2:208426/7‑141 (MQ=255)                                             cgtcgatggtagtcgaacttacgttccgctagagtagaacgttgccaggcagttttttaatcaaattttggttaaaaaataaaatggacaagataaAAAAAGTTATTGACTTAAATGTTGATAAAATGTATAATTAATTCt                                                                                               >  1:280601‑M1/97‑141 (MQ=255)                                                   ttGAAAGCCTGTATAGTATTTATTTGTTGAGGCAAACAAA‑ACAACTCAACTTAAGAAATAACTTGAATTACT‑CTGCTGCTTGATGGTGAAAAAGTTATTGACTTAAATGTTAATAAAATGTATAATTAATTCTTGTCGGTa                                                                                       >  1:146522/1‑141 (MQ=255)                                                    ggtagtcgaacttacgttccgctagagtagaacgttgccaggcagttttttaatcaaattttggttaaaaaataaaatggacaagataaAAAAAGTTATTGACTTAAATGTTGATAAAATGTATAATTAATTCTTGTCGGt                                                                                        >  1:288900‑M1/90‑141 (MQ=255)                                                    ggtagtcgaacttacgttccgctagagtagaacgttgccaggcagttttttaatcaaattttggttaaaaaataaaatggacaagataaAAAAAGTTATTGACTTAAATGTTGATAAAATGTATAATTAATTCTTGTCGGt                                                                                        <  2:72648‑M1/52‑1 (MQ=255)                                                     gtagtcgaacttacgttccgctagagtagaacgttgccaggcagttttttaatcaaattttggttaaaaaataaaatggacaagataaAAAAAGTTATTGACTTAAATGTTGATAAAATGTATAATTAATTCTTGTCGGTa                                                                                       <  1:233087‑M1/53‑1 (MQ=255)                                                      aaaGCCTGTATAGTATTTATTTGTTGAGGCAAACAAA‑ACAACTCAACTTAAGAAATAACTTGAATTACTAACAAAAATTAATTTT‑AAAAAGTTATTGACTTAAATGTTAATAAAATGTATAATTAATTCTTGTCGGTAAGa                                                                                    >  2:114287/1‑141 (MQ=255)                                                       aaGCCTGTATAGTATTTATTTGTTGAGGCAAACAAA‑ACAACTAAACTTAAGAAATAACTTGAATTACTAACGAAAATTACTTTT‑AAAAAGTTATTGACTTATATGTTAATAAAATATATAATTAATTTTTGTCTCTAAGaa                                                                                   >  2:244457/1‑141 (MQ=255)                                                        gacgaacttacgttccgctagagtagaacgttgccaggcagttttttaatcaaattttggttaaaaaataaaatggacaatataaAAAAAGTTATTGACTTAAATGTTGATAAAATGTATAATTAAGTCTTGTCGGTAAGa                                                                                    >  1:122786‑M1/86‑141 (MQ=255)                                                           cTGTATAGTATTTATTTGTTGAGGCAAACAAA‑ACAACTCAACTTAAGAAATAACTTGAATTACTAACGAAAATTAATTTT‑AAAAAGTTATTGACTTAAATGTTAATAAAATGTATAATTAATTCTTGTCGGTAAGAAAAAt                                                                               <  1:179595/141‑1 (MQ=255)                                                                taGTATTTATTTGTTGAGGCAAACAAA‑ACAACTCAACTTAAGAAATAACTTGAATTACTAACGAAAATTAATTTT‑AAAAAGTTATTGACTTAAATGTTAATAAAATGTATAATTAATTCTTGTCGGTAAGACAAATGAACa                                                                          >  2:251288/1‑141 (MQ=255)                                                                  gTATTTATTTGTTGAGGCAAACAAA‑ACAACTCAACTTAAGAAATAACTTGAATTACTAACGAAAATTAATTTT‑AAAAAGTTATTGACTTAAATGTTAATAAAATGTATAATTAATTCTTGTCGGTAAGAAAAATGAACaat                                                                        >  2:265783/1‑139 (MQ=255)                                                                     tttatttGTTGAGGCAAACAAA‑ACAACTCAACTTAAGAAATAACTTGAATTACTAACGAACATTAATTTT‑AAAAAGTTATTGACTTAAATGTTCATAAAATGTATAATTAATCCTCGTCCGTAAGAAAAATGAACATTGa‑a                                                                    >  2:277784/1‑141 (MQ=255)                                                                       tatttGTTGAGGCAAACAAA‑ACAACTCAACTTAAGAGTATTTTTTAATTAATAACGAAAATGAATTTT‑AAAAAGTTATTGACTTAAATGTTAATAAAATGTATAATTAAGTCTGGTCGGTAAGAAAAATGAACATTGa‑aaa                                                                  <  2:2894/141‑1 (MQ=255)                                                                         tttGTTGAGGCAAACAAA‑ACAACTCAACTTAAGAAATAACTTGAATTACTAACGAAAATTAATTTT‑AAAAAGTTATTGACTTAAATGTTAATAAAATGTATAATTAATTCTTGTCGGTAAGAAACATGCACATTCA‑AAACt                                                                >  2:298099/1‑141 (MQ=255)                                                                            gttgAGGCAAACAAA‑ACAACTCAACTTAAGAAATAACTTGAATAACTAACGAAAATTAATTTT‑AAAAAGTTATTGACTTAAATGTTAATAAAATGTATAATTAATTCTTGTCGGTAAGAAAAATGAACATTGA‑AAACTGaa                                                             >  2:126873/1‑141 (MQ=255)                                                                              tgAGGCAAACAAA‑ACAACTCAACTTAAGAAATAACTTGAATTACTAACGAAAATTAATTTT‑AAAAAGTTATTGACTTAAATGTTAATAAAATGTATAATTAATTCTTGTCGGTAAGAAAAATGAACATTGA‑AAACTGAATg                                                           >  1:92941/1‑141 (MQ=255)                                                                              tgAGGCAAACAAA‑ACAAATCAACATAAGAAATAACTTGAATTACTAACGAAAATTAATTTT‑AAAAAGTTATTGACTTAAATGTTAATAAAATGTATAATTAATTCTTGTCGGTAAGAAAAATGAACATTGA‑AAACTGAATg                                                           >  2:222925/1‑141 (MQ=255)                                                                                    cgttgccaggcagttttttaatcaaattttggttaaaaaataaaatggacaagataaAAAAAGTTATTGTCTTAAATGTTGATAAAATGTATAATTAATTCTTGTCGGTAAGAAAAATGAACATTGA‑AAACTGAATGACaa                                                       >  1:166016‑M1/58‑141 (MQ=255)                                                                                    cgttgcaaggcagttctttaatcaaattgtggttaaaaaataaaatggaaaagataaAAAAAGTTATTTACTTAAATGTTGATAAAATGTATAATTAATTCTTGTCGGTAAGAAAAATGAACATTGA‑AAACTGAATGACaa                                                       >  2:9903‑M1/58‑141 (MQ=255)                                                                                    aaacaaa‑acaACTCAACTTAAGAAATAACTTGAATTACTAACGAAAATTAATTTT‑AAAAAGTTATTGACTTAAATGTTAATAAAATGTATAATTAATTCTTGTCGGTAAGAAAAATGAACATTGA‑AAACTGAATGACAata                                                     <  2:51021/141‑1 (MQ=255)                                                                                     aacaaa‑acaaCTCAACTTAAGAAATAACTTGAATTACTAACGAAAATTAATTTT‑AAAAAGTTATTGACTTAAATGTTAATAAAATGTATAATTAATTCTTGTCGGTAAGAAAAATGAACATTGA‑AAACTGAATGACAatat                                                    >  1:234529/1‑141 (MQ=255)                                                                                             caactcaactTAAGAAATAACTTGAATTACTAACGAAAATTAATTTT‑AAAAAGTTATTGACTTAAATGTTAATAAAATGTATACTTAATTCTTGTCGGTAAGAAAAATGAACATTGA‑AAACTGAATGACAATATGTCAACg                                             <  1:142300/141‑1 (MQ=255)                                                                                              aactcaactTAAGAAATAACTTGAATTACTAACGAAAATTAATTTT‑AAAAAGTTATTGACTTAAATGTTAATAAAATGTATAATTAATTCTTGTCGGTAAGAAAAATGAACATTGA‑AAACTGAATGACAATATGTCAACGt                                            >  2:27100/1‑141 (MQ=255)                                                                                              aactcaactTAAGAAATAACTTGAATTACTAACGAAAATTAATTTT‑AAAAAGTTATTGACTTAAATGTTAATAAAATGTATAATTAATTCTTGTCGGTAAGAAAAATGAACATTGA‑AAACTGAATGACAATATGTCAACGt                                            >  1:269157/1‑141 (MQ=255)                                                                                                    actTAAGAAATAACTTGAATTACCAACGAAAATTAATTTT‑AAAAAGTTATTGACTTAAATGTTAATAAAATGTATAATTAATTCTTGTCGGTAAGAAAAATAAACATTGA‑GAACTGAATGACAATATGTCAACGTTAAtac                                      >  2:186490/1‑139 (MQ=255)                                                                                                       tAAGAAATAACTTGAATTACTAACGAAAATTAATTTT‑AAAAAGTTATTGACTTAAATGTTAATAAAATGTATAATTAATTCTTGTCGGTAAGAAAAATGAACATTGA‑AAACTGAATGACAATATGTCAACGTTAATTCCaa                                   <  2:278659/141‑1 (MQ=255)                                                                                                        aaGAAATAACTTGAATTACTAACGAAAATTAATTTT‑AAAAAGTTATTGACTTAAATGTTAATAAAATGTATAATTAATTCTTGTCGGTAAGAAAAATGAACATTGA‑AAACTGAATGACAATATGTCAACGTTAATTCCaaa                                  <  1:277794/141‑1 (MQ=255)                                                                                                        aaGAAATAACTTGAATTACTAACGAAAATTAATTTT‑AAAAAGTTATTGACTTAAATGTTAATAAAATGTATAATTAATTCTTGTCGGTAAGAAAAATGAACATTGA‑AAACTGAATGACAATATGTCAACGTTAATTCCaaa                                  <  2:122152/141‑1 (MQ=255)                                                                                                        aaGAAATAACTTGAATTACTAACGAAAATTAATTTT‑AAAAAGTTATTGACTTAAATGTTAATAAAATGTATAATTAATTCTTGTCGGTAAGAAAAATGAACATTGA‑AAACTGAATGACAATATGTCAACGTTAATTCCaaa                                  <  1:260599/141‑1 (MQ=255)                                                                                                           aaaTAACTTGAATTACTAACGAAAATTAATTTT‑AAAAAGTTATTGACTTAAATGTTAATAAAATGTATAATTAATTCTTGTCGGTAAGAAAAATGAACATTGA‑AAACTGAATGACAATATGTCAACGTTAATTCCaaaaaa                               <  2:92941/141‑1 (MQ=255)                                                                                                            aatcttggtaaaaaaataaaatggacaagataaAAAAAGTTATTGACTTAAATGTTGATAAAATGTATAATGAATTCTTGTCGGTAAGAAAAATGAACATTGA‑AAACTGAATGACAATATGTCAACGTTAATTCCaaaaaa                               >  1:267922‑M1/34‑141 (MQ=255)                                                                                                                 attGAATTACTAACGAAAATTAATTTT‑AAAAAGTTATTGACTTAAATGTTAATAAAATGTATAATTAATTCTTGTCGGTAAGAAAAATGAACATTGA‑AAACTGAATGACAATATGTCAACGTTAATTCCAAAAAACGTAAc                         <  1:193065/140‑1 (MQ=255)                                                                                                                     aaTTACTAACGAAAATTAATTTT‑AAAATGTGAAGGGCCTAAAGGTTAATAAAATGTATAATTAATTCTTGTCGGTAAGAAAAATGAACATTGA‑AAACTGAATGACAATATGTCAACGTTAATTCCAAAAAACGTAACtata                     >  1:135162/1‑141 (MQ=25)                                                                                                                     aaTTACTAACGAAAATTAATTTT‑AAAAAGATATAACCTAAAATATGAATAAAATGTATAATTAATTCTTAGCGGTAAGAAAAAT‑ATCAACGAGAAACTGAATGACAATATGTCAACGTGAATACCAAAAAACGTAACtata                     >  2:126294/1‑141 (MQ=21)                                                                                                                        tACTAACGAAAATTAATTTT‑AAAAAGTTATTGACTTAAATGTTAATAAAATGTATAATTAATTCTTGTCGGTAAGAAAAATGAACATTGA‑AAACTGAATGACAATATGTCAACGTTAATTCCAAAAAACGTAACTATAAGt                  <  2:256198/141‑1 (MQ=255)                                                                                                                           tAACGAAAATTAATTTT‑AAAAAGTTATTGACTTAAATGTTAATAAAATGTATAATTAATTCTTGTCGGTAAGAAAAATGAACATTGA‑AAACTGAATGACAATATATCAACGTTAATTCCAAAAAACGTAACTATAAGTTAc               >  2:209080/1‑141 (MQ=255)                                                                                                                              aaatggacaagataaAAAAAGTCAGTGACTTAAATGTTGATAAAATGTATAATTAATTCTTGTCGGTAAGAAAAATGAACATTGA‑AAACTGAATGACAATATGTCAACGTTAATTCCAAAAAACGTAACTATAAGTTACaa             >  1:194280‑M1/16‑141 (MQ=255)                                                                                                                                 tggacaagataaAAAAAGTTATTGACTTAAATGTTGATAAAATGTATAATTAATTCTTGTCGGTAAGAAAAATGAACATTGA‑AAACTGAATGACAATATGTCAACGTTAATTCCAAAAAACGTAACTATAAGTTACAAACa          >  1:175715‑M1/13‑141 (MQ=255)                                                                                                                                 tggaaaagataaAAAAAGTTATTGACTTAAATGTTGATAGAATGTATAATTAATTCTTATCGGTAAGAAAAATGAACATTGA‑AAACTGAATGACAATATGTCAACGTTAATTCCAAAAAACGTAACTATAAGTTACAAACa          >  2:268599‑M1/13‑141 (MQ=255)                                                                                                                                   attaattTT‑AAAAAGTTATTGACTTAAATGTTAATAAAATGTATAATTAATTCTTGTCGGTAAGAAAAATGAACATTGA‑AAACTAAATGACAATATGTCAACATTAATTCCAAAAAACGTACCCATAAGATCCAAACatta       >  2:27445/1‑141 (MQ=255)                                                                                                                                        tgtt‑AAAAAGTTATTGACTTAAAGGTTAATAAAATGTATAATTAATTCTTGTCGGTAAGAAAAATGAACATTGA‑AAACTGAATGACAATATGTCAACGTTAATTCCAAAAAACGTAACTATAAGTTACAAACATTATTTAg  <  2:33692/139‑1 (MQ=255)                                                                                                                                        gataaAAAAAGTTATTGACTTAAATGTTGATAAAATGTATAATTAATTCTTGTCGGTAAGAAAAATGAACATTGA‑AAACTGAATGACAATATGTCAACGTTAATTCCAAAAAACGTAACTATAAGTTACAAACATTATTTa   <  1:238055‑M1/136‑1 (MQ=255)                                                                                                                                             |                                                                                                                                          GGCGTTCAGTACAGATGACAAAGGTGTAATTTTTACTGTTGTTAAGCAGTTTGAAAGCCTGTATAGTATTTATTTGTTGAGGCAAACAAA‑ACAACTCAACTTAAGAAATAACTTGAATTACTAACGAAAATTAATTTT‑AAAAAGTTATTGACTTAAATGTTAATAAAATGTATAATTAATTCTTGTCGGTAAGAAAAATGAACATTGA‑AAACTGAATGACAATATGTCAACGTTAATTCCAAAAAACGTAACTATAAGTTACAAACATTATTTAG  >  USA300TCH1516_ALE/512482‑512756

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.