BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	2085296 =	302 (0.830)	25 (0.080)	20/232	NT	8.2%	coding (173/201 nt)	hlb_1	Phospholipase C
*	?	USA300TCH1516_ALE	= 2128343	294 (0.900)	25 (0.080)	20/232	NT	8.2%	coding (1/825 nt)	hlb_2	Phospholipase C

Only 100 of 418 total aligned reads displayed.

ACTACATCCGTGTATTCTCATTTGTTAGAAGAAAAATTTAATGAAGAGGACAAAAAAACAACTAAAATTTTAGAAAGTATGTAATTTAGGGACCCATTAGGGACTCCAAACCCAATAAATACTGTTGTTACAAGGTTTCTATGTATCCAAACTGGGGGCAATATAAACGCGCTGATTTAATCGGACAATCTTCTTATATTAAAAATAATGATGTCGTAATATTCAATGAAGCATTTGATAATGGTGCATCAGACAAATTATTAAGTAATGTGAAAAAAGAA  >  USA300TCH1516_ALE/2128203‑2128483

 cTACATCCGTGTATTCTCATTTGTTAGAAGAAAAATTTAATGAAGAGGACAAAAAAACATCTAAAATTTTAGAAAGTATGTAGTTTAGGAACCCATTAGGGACTCCAAACACAATAAATACTGTTGTTACAAGGTTTCTAt                                                                                                                                             <  2:2924049‑M2/141‑2 (MQ=255)

 cTACATCCGTGTATTCTCATTTGTTAGAAGAAAAATTTAATGAAGAGGACAAAAAAACAACTAAAATTTTAGAAAGTATGTACTTTAGGGACCCATTAGGGACTCCAAACCCAATAAATACTGTTGTTACAAGGTTTCTAt                                                                                                                                             <  1:1439471‑M2/141‑2 (MQ=255)

 cTACATCCGTGTATTCTCATTTGTTAGAAGAAAAATTTAATGAAGAGGACAAAAAAACAACTAAAATTTTAGAAAGTATGTAATTTAGGGACCCATCAGGGACTCCACACCCAATAAATACTGTTGTTCCAAGGTTTCTAt                                                                                                                                             <  2:3728840‑M2/141‑2 (MQ=255)

  aacATCCGTGTATTATCATGTGTTAGAAGAAAAATTTAATGAAGAGGACAAAAAAACAACTAAAATTTTAGAAAGTATGTAATTTAGGGACCCATTAGGGACTCCAAACCCAATAAATACTGTTGTTACAAGGTTTCTAtg                                                                                                                                            >  2:2553359‑M2/2‑139 (MQ=255)

   aCATCCGTGTATTCTCATTTGTTAGAAGAAAAATTTAATGAAGAGGACAAAAAAACAACTACAATTTTAGAAAGTATGTAATTTAGGGACCCATTAGGGACTCCAAACCCAATAAATACTGTTGTTACAAGGTTTCTAtgt                                                                                                                                           <  2:355712‑M2/141‑4 (MQ=255)

   aCATCCGTGTATTCTCATTTGTTAGAAGAAAAATTTAATGAAGAGGACAAAAAAACAACTAAAATTTTAGAAAGTATGTAATTTAGGGACCCATTAGGGACTCCAAACCCAATAAATACTGTTGTTACAAGGTTTCTAtgt                                                                                                                                           <  2:1756289‑M2/141‑4 (MQ=255)

   aCATCCGTGTATTCTCATTTGTTAGAAGAAAAATTTAATGAAGAGGACAAAAAAACAACTAAAATTTTAGAAAGTATGTAATTTAGGGACCCATTAGGGACTCCAAACCCAATAAATACTGTTGTTACAAGGTTTCTAtgg                                                                                                                                           <  1:3191749‑M2/141‑4 (MQ=255)

   aCATCCGTGTATTCTCATTTGTTAGAAGAAAAATTTAATGAAGAGGACAAAAAAACAACTAAAATTTTAGAAAGAATATAATTTAGGGACCCATTAGGGACTCCAAACCCAATAAATACTGTTGTTACAAGGTTTCTAtgt                                                                                                                                           <  2:1348422‑M2/141‑4 (MQ=255)

    cATCCGTGTATTCTCATTTGTTAGAAGAAAAATTTAATGAAGAGGACAAAAAAACAACTAAAATTTTAGAAAGTATGTAATTTAGGGACCCATTAGGGACTCCAAACCCAATAAATACTGTTGTTACAAGGTTTCTAtgta                                                                                                                                          >  1:3497650‑M2/1‑137 (MQ=255)

      tgaatgaaTTGTCATTTGTTAGAAGAAAAATTTAATGAAGAGGACAAAAAAACAACTAAAATTTTAGAAAGTATGTAATTTATGGACCCATTAGGGACTCCAAACCCAATAAATACTGTTGTTACAAGGTTTCTATGTATc                                                                                                                                        <  2:1425546/134‑1 (MQ=255)

      tCCGTGTATTCTCATTTGTTAGAAGAAAAATTTAATGAAGAGGACAAAAAAACAACTAAAATTTTAGAAAGTATGTATCATGGGTACCGAGTAGGGACTCCAAACCCAATAAATACTGTTGTTACAAGGTTTCTAtgtatc                                                                                                                                        <  1:2078225‑M2/141‑7 (MQ=255)

      tCCGTGTATTCTCATTTGTTAGAAGAAAAATTTAATGAAGAGGACAAAAAAACAACTAAAATTTTAGAAAGTATGTAATTTAGGGACCCATTAGGGACTCCAAACCCAATAAATACTGTTGTTACAAGGTTTCTAtgtatc                                                                                                                                        <  2:1508627‑M2/141‑7 (MQ=255)

      tCCGTGTATTCTCATTTGTTAAAAGAAAAATTTAATGAAGAGGACAAAAAAACAACTAAAATTTTAGAAAGTATGTAATTTAGGGACCCATTAGGGACTCCAAACCCAATAAATACTGTTGTTACAAGGTTTCTAtgtatc                                                                                                                                        >  2:3452087‑M2/1‑135 (MQ=255)

      acagtgtattATCATTTGTTAGAAGAAAAATTTAATGAAGAGGACAAAAAAACAACTAAAATTTTAGAAAGTATGTAATTTAGGGACCCATTAGGGACTCCAAACCCAATAAATACTGTTGTTACAAGGTTTCTAtgtatc                                                                                                                                        >  2:3158588‑M2/4‑135 (MQ=255)

       ccGTGTATTCTCATTTGTTAGAAGAAAAATTTAATGAAGAGGACAAAAAAACAACTAAAATTTTAGAAAGTATGTAATTTAGGGACCCATTAGGGACTCCAAACCCAATAAATACTGTTGTTACAAGGTTTCTAtgtatcc                                                                                                                                       <  2:3650202‑M2/141‑8 (MQ=255)

       ccGTGTATTCTCATTTGTTAGAAGAAAAATTTAATGAAGAGGACAAAAAAACAACTAAAAATTTAGAAAGTATGTAATTTAGAGACCCATTAGGGACTACGAACCCAATAAATACTGTTGTTACAAGTTTTCTAggtatca                                                                                                                                       <  2:3230750‑M2/141‑8 (MQ=255)

        cGTGTATTCTCATTTGTTAGAAGAAAAATTTAATGAAGAGGACAAAAAAACAACTAAAATTTTAGAAAGTATGTAATTTAGGGACCCATTAGGGACTCCAAACCCAATAAATACTGTTGTTACAAGGTTTCTAtgtatcca                                                                                                                                      >  1:2704894‑M2/1‑133 (MQ=255)

         gtgtATTCTCATTTGTTAGAAGAAAAATTTAATGAAGAGGACAAAAACAACCCTCATGATCTAGAAACCATGTAATTTAGGTACCCATTAGGGACTCCAAACCCAATAAATACTGTTGTTACAAGGTTTCTAtgtatccaa                                                                                                                                     >  1:842614‑M2/1‑132 (MQ=255)

         gtgtATTCTCATTTGTTAGAAGAAAAATTTAAGGAAGAGGACAAAAAAACAACTAAAATTTTAGAAAGTATGTAATATAGGAACCCATTAGCGACTCCAAACCCAATAAATACTGTTGTTACAAGATTTCTAtgtctccaa                                                                                                                                     <  2:73172‑M2/141‑10 (MQ=255)

           gtATTCTCATTTGTTAGAAGAAAAATTTAATGAAGAGGACAAAAAAACAACTAAAATTTTAGAAAGTATGTAATTTAGGGACCCATTAGGGACTCCAAACCCAATAAATACTGTTGTTACAAGGTTTCTAtgtatccaaac                                                                                                                                   >  1:1143902‑M2/1‑130 (MQ=255)

           gtATTCTCATTTGTTAGAAGAAAAATTTAACGAAGAGGACAAAAAAACAACTAAAATTTTAGAAAGTATGTAATTTAGGGACCCATTAGGGACTCCAAACCCAATAAATACTGTTGTTACAAGGTTTCTAtgtatccaaac                                                                                                                                   <  2:2309004‑M2/141‑12 (MQ=255)

              ttatcATTTGTTAGAAGAAAAATTTAATGAAGAGGACAAAAAAACAACTAAAATTTTAGAAAGTATGTAATTTAGGGACCCATTAGGGACTCCAAACCCAATAAATACTGTTGTTACAAGGTTTCTATGTATCCAAACTgg                                                                                                                                <  2:1220528/138‑1 (MQ=255)

              ttCTCATTTGTTAGAAGAAAAATTTAATGAAGAGGACAAAAAAACAACTAAAATTTTAGAAAGTATGTAATTTAGGGACCCATTAGGGACTCCAAACCCAATAAATACTGTTGTTACAAGGTTTCTAtgtatccaaactgg                                                                                                                                <  1:1386406‑M2/141‑15 (MQ=255)

              ttCTCAATTGTTAGAAGAAAAATTTAAAGAAGAGGACAAAAAACCAACTAAAATTTTAGAAAGTATGTAATTTAGGGACCCATTAGGGACTCCAAACCCAATAAATACTGTTGTTACAAGGTTTCTAtgtatccaaactgg                                                                                                                                >  2:2412027‑M2/1‑127 (MQ=255)

               tctcATTTGTTAGAAGAAAAATTTAATGAAGAGGACAAAAAAACAACTAAAATTTTAGAAAGTATGTAATTTAGGGACCCATTAGGGACTCCAAACCCAATAAATACTGTTGTTACAAGGTTTCTATGTATCCAAACTggg                                                                                                                               <  2:3993518/141‑1 (MQ=255)

                ctcATTTGTTAGAAGAAAAATTTAATGAAGAGGACAAAAAAACAACTAAAATTTTAGAAAGTATGTAATTTAGGGACCCATTAGGGACTCCAAACCCAATAAATACTGTTGTTACAAGGTTTCTATGTATCCAAACTgggg                                                                                                                              >  2:130046/1‑141 (MQ=255)

                  cATTTGTTAGAAGAAAAATTTAATGAAGAGGACAAAAAAACAACTAAAATTTTAGAAAGTATGTAATTTAGGGACCCATTAGGGACTCCAAACCCAATAAATACTGTTGTTACAAGGTTTCTATGTATCCAAACTGGGGGc                                                                                                                            >  1:785869/1‑141 (MQ=255)

                       attAGAAGAAAAATGTCAAGAAGAGGAAAACACAACAAATAAAATTTTAGAACCTATGTAATCTCGAGCGCCATCAGGGACTTCAAACCCAATAAATACTGTTGTTACTTTGGTTGCATCGATCCAAACTGGGGGCAatat                                                                                                                       <  2:81128/140‑1 (MQ=255)

                          agaagaAAAATTTAATGAAGAGGACAAAAAAACAACTAAAATTTTAGAAAGTATGTAATTTAGGGACCCATTAGGGACTCCAAACCCAATAAATACTGTTGTTACAAGGTTTCTATGTATCCAAACTGGGGGCAATATaaa                                                                                                                    >  1:1338393/1‑141 (MQ=255)

                          agaagaAAAATTTAATGAAGAGGACAAAAAAACAACTAAAATTTTAGAAAGTATGTAATTTAGGGACCCATTAGGGACTCCAAACCCAACAAGAACGGTGGTTACAAGGTTTCTAGGTATCCAAACTGGGGGCAATATaaa                                                                                                                    >  1:3670507/1‑141 (MQ=255)

                             agaaAAATTTAATGAAGAGGACAAAAAAACAACTAAAATTTTAGAAAGTATGTAATTTAGGGACCCATTAGGGACTCCAAACCCAATAAATACTGTTGTTACAAGGGTTCTATGTATCCAAACTGGGGGCAATATAAAcgc                                                                                                                 >  1:1012745/1‑141 (MQ=255)

                                 aaaTTTAATGAAGAGGACAAAAAAACAACTAAAATTTTAGAAAGTATGTAATTTAGGGACCCATTAGGGACTCCAAACCCAATAAATACTGTTGTTACAAGGTTTCTATGTATCCAAACTGGGGGCAATCTAAACGCGCtt                                                                                                             >  1:25172/1‑140 (MQ=255)

                                 aaaTTTAATGAAGAGGACAAAAAAACAACTAAAATTTTAGAAAGTATGTAATTTAGGGACCCATTAGGGACTCCAAACCCAATAAATACTGTTGTTACAAGGTTTCTATGTATCCAAACTGGGGGCAATCTAAACGCGCTg                                                                                                             >  2:3970676/1‑141 (MQ=255)

                                   aTTTAATGAAGAGGACAAAAAAACAACTAAAATTTTAGAAAGTATGTAATTTAGGGACCCATTAGGGACTCCAAACCCAATAAATACTGTTGTTACAAGGTTTCTATGTATCCAAACTGGGGGCAATATAAACGCGCTGAt                                                                                                           <  1:2150421/141‑1 (MQ=255)

                                     ttAATGAAGAGGACAAAAAAACAACTAAAATTTTAGAAAGTATGTAATTTAGGGACCCATTAGGGACTCCAAACCCAATAAATACTGTTGTTACAAGGTTTCTATGTATCCAAACTGGGGGCAATATAAACGCGCTGAtgt                                                                                                         >  1:521531/1‑139 (MQ=255)

                                        aagAAAAGGACAAAAAAACAACTAAAATTTGAGAAAGTATGTAATTTAGGGATCCATTAGGGACTCCAAACCCAATAAATACTGTTGTTACAAGGTTTCTATGTATCCAAACTGGGGGCAATATAAACGCGCTGATTTAAt                                                                                                      <  2:2104946/139‑1 (MQ=255)

                                           aaGAGGACAAAAAAACAACTAAAATTTTAGAAAGTATGTAATTTAGGGACCCATTAGGGACTCCAAACCCAATAAATACTGTTGTTACAAGGTTTCTATGTATCCAAACTGGGGGCAATATAAACGCGCTGATTTAATCgg                                                                                                   <  1:1770749/141‑1 (MQ=255)

                                            agagGACAAAAAAACAACTAAAATTTTAGAAAGTATGTAATTTAGGGACCCATTAGGGACTCCAAACCCAATAAATACTGTTGTTACAAGGTTTCTATGTATCCAAACTGGGGGCAATATAAACGCGCTGATTTAATCGGa                                                                                                  <  2:2836172/141‑1 (MQ=255)

                                            agagGACAAAAAAACAACTAAAATTTTAGAAAGTATGTAATTTAGGGACCCATTAGGGACTCCAAACCCAATAAATACTGTTGTTACAAGGTTTCTATGTATCCAAACTGGGGGCAATATAAACGCGCTGATTTAATCGGa                                                                                                  <  1:3731277/141‑1 (MQ=255)

                                            agagGACAAAAAAACAACTAAAATTTTAGAAAGTATGTAATTTAGGGACCCATTAGGGACTCCAAACCCAATAAATACTGTTGTTACAAGGTTTCTATGTATCCAAACT‑GGGGCAATATAAACGCGCTGATTTAATCGGAc                                                                                                 <  2:14895/141‑1 (MQ=255)

                                            agaagaAAAAAACACAACTAAAATTTTAGAAAGTATGTAATTTAGGGACCCATTAGGGACTCCAAACCCAATAAATACTGTTGTTACAAGGTTTCTATGTATCCAAACTGGGGGCAATATAAACGCGCTGATTTAATCGGa                                                                                                  <  2:368483/141‑1 (MQ=255)

                                             gagGACAAAAAAACAACTAAAATTTTAGAAAGTATGTAATTTAGGGACCCATTAGGGACTCCAAACCCAATAAATACTGTTGTTACAAGGTTTCTATGTATCCAAACTGGGGGCAATATAAACGCGCTGATTTAATCGGAc                                                                                                 <  1:981559/141‑1 (MQ=255)

                                             gagGACAAAAAAACAACTAAAATTTTAGAAAGTATGTAATTTAGGGACCCATTAGGGACTCCAAACCCAATAAACCTGGTTTATATGAGTTTTCTATGTATCCAAACTGGGGGCAATATAAACGCGCTGATTTAATCGGAc                                                                                                 >  1:4370200/1‑141 (MQ=255)

                                                gACAAAAAAACAACTAAAATTTTAGAAAGTATGTAATTTAGGGACCCATTAGGGACTCCAAACCCAATAAATACTGTTGTTACAAGGTTTCTATGTATCCAAACTGGGGGCAATATAAACGCGCTGATTTAATCGGACAAt                                                                                              >  1:23892/1‑141 (MQ=255)

                                                 aCAAAAACACAACTGAAATTTTAGAAAGTATGTAATTTAGGGACCCATTAGGGACTCCAAACCCAATAAATACTGTTGTTACAAGGTTTCTATGTACCCAAACTGAAGGCAATATAAACGAGACGATTTAATCGGACAAtc                                                                                             >  2:2720461/1‑141 (MQ=255)

                                                   aaaaaaaCAACTAAAATTTTAGAAAGTATGTAATTTAGGGACCCATTAGGGACTCCAAACCCAATAAATACTGTTGTTACAAGGTTTCTATGTATCCAAACTGGGGGCAATATAAACGCGCTGATTTAATCGGACAAtctt                                                                                           >  2:172325/1‑141 (MQ=255)

                                                          caacTAAAATTTTAGAAAGTATGTAATTTAGGGACCCATTAGGGACTCCAAACCCAATAAATACTGTTGTTACAAGGTTTCTATGTATCCAAACTGGGGGCAATATAAACGCGCTGATTTAATCGGACAATCTTCTTatat                                                                                    <  1:2581527/141‑1 (MQ=255)

                                                           aacTAAAATTTTAGAAAGTATGTAATTTAGGGACCCATTAGGGACTCCAAACCCAATAAATACTGTTGTTACAAGGTTTCTAtgtatccaaactggagacttttaacataaaattacttatcattcaaaaagtaaaacagc                                                                                   <  1:2857993‑M2/141‑60 (MQ=255)

                                                           aacTAAAATTTTAGAAAGTATGTAATTTAGGGACCCATTAGGGACTCCAAACCCAATAAATACTGTTGTTACAAGGTTTCTATGTATCCAAACTGGGGGCAATATAAACGCGCTGATTTAATCGGACAATCTTCTTATAtt                                                                                   >  1:225360/1‑141 (MQ=255)

                                                           aacAAAAATTTTAGAAAGTATGTAATTTAGGGACCCATTAGGGACTCCCCAACCAATTGAGACTGTTGTTACAATCTTGCTATGTATCCAAACTGGGGGCAATATAAACGCGCTGATTTAATCGGACAATCTTCTTATAtt                                                                                   <  1:1231096/141‑1 (MQ=255)

                                                            acTAAAATTTTAGAAAGTATGTAATTTAGGGACCCATTAGGGACTCCAAACCCAATAAATACTGTTGTTACAAGGTTTCTATGTATCCAACCTGGGGGCAATATAAACGCGCTGATTTAATCGGACAATCTTCTTATATTa                                                                                  <  1:1477588/141‑1 (MQ=255)

                                                                   ttttAGAAAGTATGTAATTTAGGGACCCATTAGGGACTCCAAACCCAATAAATACTGTTGTTACAAGGTTTCTATGTATCCAAACTGGGGGCAATATAAACGCGCTGATTTAATCGGACAATCTTCTTATATTAAAaataa                                                                           <  1:2463322/141‑1 (MQ=255)

                                                                    tttAGAAAGTATGTAATTTAGGGACCCATTAGGGACTCCAAACCCAATAAATACTGTTGTTACAAGGTTTCTATGTATCCAAACTGGGGGCAATATAAACGCGCTGATTTAATCGGACAATCTTCTTATATTAAAaataat                                                                          >  1:327901/1‑141 (MQ=255)

                                                                      tAGAAAGTATGTAATTTAGGGACCCATTAGGGACTCCAAACCCAATAAATACTGTTGTTACAAGGTTTCTATGTATCCAAACTGGGGGCAATATAAACGCGCTGATTTAATCGGACAATCTTCTTATATTAAAAATAatga                                                                        >  1:1959018/1‑141 (MQ=255)

                                                                            gTAGGTAATTTAGGGACCCATTAGGGACTCCAAACCCAATAAATACTGTTGTTACAAGGTTTCTATGTATCCAAACTGGGGGCAATATAAACGCGCTGATTTAATCGGACAATCTTCTTATATTAAAAATAATGATGTCGt                                                                  <  2:2599568/141‑1 (MQ=255)

                                                                                gTAATTTAGGGACCCATTAGGGACTCAACGATTGATAAATACTGTTGTTACAAGGTTTCTATGTATCCAAACTGGGGGCAATATAAACGCGCTGATTTAATCGGACAATCTTCTTATATTAAAAATAATGATGTCGTAata                                                              <  2:710300/141‑1 (MQ=255)

                                                                                gTAATTGAGGGACCCATTAGGGACTCCAAACCCAATAAATACTGTTGTTACAAGGTTTCTATGTATCCAAACTGGGGGCAATATAAACGCGCTGATTTAATCGGACAATCTTCTTATATTAAAAATAATGATGTCGTAata                                                              <  2:1851790/141‑1 (MQ=255)

                                                                                gTAAGTTAGGGACACATTAGGAACTCCAAACCCAATAAATACTGTTGTTACAAGGTTTCTATGTATCCAAACTGGGGGCAATATAAACGCGCTGATTTAATCGGACAATCTTCTTATATTAAAAATAATGATGTCGTAata                                                              <  2:1078675/141‑1 (MQ=255)

                                                                                  aaTTTAGGGACCCATTAGGGACTCCAAACCCAATAAATACTGTTGTTACAAGGTTTCTATGTATCCAAAATGGGGGCAATATAAACGCGCTGATTTAATCGGACAATCTTCTTATATTAAAAATAATGATGTCGTAATAtt                                                            >  1:3695947/1‑141 (MQ=255)

                                                                                   aTTTAGGGACCCATTAGGGACTCCAAACCCAATAAATACTGTTGTTACAAGGTTTCTATGTATCCAAACTGGGGGCAATATAAACGCGCTGATTTAATCGGACAATCTTCTTATATTAAAAATAATGATGTCGTAATATTc                                                           <  1:2443185/141‑1 (MQ=255)

                                                                                    tttAGGGACCCATTAGGGACTCCAAACCCAATAAATACTGTTGTTACAAGGTTTCTATGTATCCAAACTGGGGGCAATATAAACGCGCTGATTTAATCGGACAATCTTCTTATATTAAAAATAATGATGTCGTAATATTCa                                                          >  1:2814225/1‑141 (MQ=255)

                                                                                    tgtAGGGACCCACTAGGGACTCCAAACCCAATAAATACTGTTGTTACAAGGTTTCTGTGGATCCAAACTGGGGGCAATATAAACGCGCTGAGTTAATCGGACAATCTTCTTATATTAAAAATAATGATGTCGTAATATTCa                                                          <  2:2000497/139‑1 (MQ=255)

                                                                                     ttAGGGACCCATTAGGGACTCCAAACCCAATAAATACTGTTGTTACAAGGTTTCTATGTATCCAAACTGGGGGCAATATAAACGCGCTGATTTAATCGGACAATCTTCTTATATTAAAAATAATGATGTCGTAATATTCaa                                                         <  1:1540984/141‑1 (MQ=255)

                                                                                     ttAGGGACCCATTAGGGACTCCAAACCCAATAAATACTGTTGTTACAAGGTTTCTATGTATCCAAACTGGGGGCAATATAAACGCGCTGATTTAATCGGACAATCTTCTTATATTAAAAATAATGATGTCGTAATATTCaa                                                         <  2:2267053/141‑1 (MQ=255)

                                                                                      tAGGGACCCATTAGGGCCTCCAAACCCAATAAATACTGTTGTTACAAGGTTTCTATGTATCCAAACTGGGGGCAATATAAACGCGCTGATTTAATCGGACAATCTTCTTATATTAAAAATAATGATGTCGTAATATTCAAt                                                        <  1:2230121/141‑1 (MQ=255)

                                                                                      tAGGGACCCATTAGGGACTCCAAACCCAATAAATACTGTTGTTACAAGGTTTCTATGTATCCAAACTGGGGGCAATATAAACGCGCTGATTTAATCGGACAATCTTCTTATATTAAAAATAATGATGTCGTAATATTCAAt                                                        <  1:4050730/141‑1 (MQ=255)

                                                                                        gggACCCATTAGGGACTCCAAACCCAATAAATACTGTTGTTGCAAGGTTTCTATGTATCCAAACTGGGGGCAATATAAACGCGCTGATTTAATCGGACAATCTTCTTATATTAAAAATAATGATGTCGTAATATTCAATGa                                                      <  1:3815002/141‑1 (MQ=255)

                                                                                        gggACCCATTAGGGACTCCAAACCCAATAAATACTGTTGTTACAAGGTTTCTATGTATCCAAACTGGGGGCAATATAAACGCGCTGATTTAATCGGACAATCTTCTTATATTAAAAATAATGATGTCGTAATATTCAATGa                                                      <  1:3378660/141‑1 (MQ=255)

                                                                                         ggACCCATTAGGGACTCCAAACCCAATAAATACTGTTGTTACAAGGTTTCTATGTATCCAAACTGGGGGCAATATAAACGCGCTGATTTAATCGGACAATCTTCTTATATTAAAAATAATGATGTCGTAATATTCAATGaa                                                     >  1:1087382/1‑141 (MQ=255)

                                                                                           aCCCATTAGGGACTCCAAACCCAATAAATACTGGTGTTACAAGGTTTCTATGTATCCAAACTGAGGGCAATATAAACGCGCTGATTTAATCGGACAATCTTCTTATATTAAAAATAATGATGTCGTAATATTCCATGAAGc                                                   >  2:4352513/1‑141 (MQ=255)

                                                                                             ccATTAGGGACTCCAAACCCAATAAATACTGTTGTTACAAGGTTTCTATGTATCCAAAATAGGGACAATGTAAACGCGCTGATCGAAATCGACAATCTTCTTATATAAAAAATAATGAACTGATAATAATTAATGAAGCAt                                                 >  1:1899047/1‑141 (MQ=255)

                                                                                                 tAGGGACTCCAAACCCAATAAATACTGTTGTTACAAGGTTTCTATGTATCCAAACTGGGGGCAATATAAACGCGATGATGTAATTTGTCAGTCTTCTTATATTAAATTTAATAATGTTATTAAATGTGATGAAGCATTTGa                                             >  2:4250623/1‑141 (MQ=255)

                                                                                                    ggACTCCAAACCCAATAAATACTGTTGTTACAAGGTTTCTATGTATCCAAACTGGGGGCAATATAAACGCGCTGATTTAATCGGACAATCTTCTTATATTAAAAATAATGATGTCGTAATATTCAATGAAGCATTTGATaa                                          >  1:2960253/1‑141 (MQ=255)

                                                                                                     gACTCCAAACCCAATAAATACTGTTGTTACAAGGTTTCTATGTATCCAAACTGGGGGCAATATAAACGCGCTGATTTAATCGGACAATCTTCTTATATTAAAAATAATGATGTCGTAATATTCAATGAAGCATTTGATAAt                                         <  2:4165814/141‑1 (MQ=255)

                                                                                                         ccAAACCCAATAAATACTGTTGTTACAAGGTTTCTATGTATCCAAACTGGGGGCAATATAAACGCGCTGATTTAATCGGACAATATTTTTATAGTAAGAATGATGATGTTGGAATATTCAATGAAGCATTTGATAATGGTg                                     >  1:3926578/1‑141 (MQ=255)

                                                                                                            aaCCCAATAAATACTGTTGTTACAAGGTTTCTATGTATCCAAACTGGGGGCAATATAAACGCGCTGATTTAATCGGACAAACTTCTTATAATAAAAATAATGATGTAGTAAAATTCTATGAAGCATTTGATACTGGTGAAt                                  >  2:2331134/1‑141 (MQ=255)

                                                                                                            aaCCCAATAAATACTGTTGTTACAAGGTTGCGATGTATCCAAACTGGGGGCAATATAAACGCGCTGATTTAAGCGGACAAGCTGCTGATATTAAAAATAATGATGTCGTAATATTCAATGAAGCATTTGATAATGGTGCAt                                  >  2:2943979/1‑141 (MQ=255)

                                                                                                            aaCCCAATAAATACTGTCGGTACAAGGTTTCTAtgtatccaaactggagacttttaacataaaattacttatcattcaaaaagtaaaacagcataatatcaaggtttataactttatcattatcaataatacctcatataa                                  <  2:1613531‑M2/141‑109 (MQ=255)

                                                                                                              cccAATAAATACTGTTGTTACAAGGTTTCTATGGAGCCAAACTGGGGGCAATATAAACGCGCTGATTTAATCGGACAATCTTCTTATATTAAAAATAATGATGTCGTAATATTCAATGAAGCATTTGATAATGGTGCATCa                                <  2:65994/141‑1 (MQ=255)

                                                                                                                   taaataCTGTTGTTACAAGGTTTCTATGTATCCAAACTGGGGGCAATGTAAACGCGCTGATTTAATCGGACAATCTTCTTATATTAAGAATAATGATGTGGTAATATTCAATGAAGCATTTGATAATGGTGCATCAGAcga                           >  1:1595294/1‑139 (MQ=255)

                                                                                                                    aaataCTGTTGTTACAAGGGTTCTATGTATCCAAACTGGGGGCAATATAAACGCGCTGATTTAATCGGACAATCTTCTTATATTAAAAATAATGATGTCGTAATATTCAATGAAGCATTTGATAATGGTGCATCAGACaaa                          <  2:3005909/141‑1 (MQ=255)

                                                                                                                    aaataCTGTTATTACAAGGTTTCTATGTATCCAACCTGGGGGCAATATAAACGCGCTGATTTAATCGGACAATCTTGTTATATTAAAAATAATGATGTGGTAATATTCAATGAGGCATTTGATAATGGGGCATCAgcaaaa                          >  1:1933079/1‑136 (MQ=255)

                                                                                                                       taCTGTTGTTACAAGGTTTCTATGTATCCAAACTGGGGGCAATATAAACGCGCTGATTTAATCGGACAATCTTCTTATATTAAAAATAATGATGTCGTAATATTCAATGAAGCATTTGATAATGGTGCATCAGACAAatta                       <  1:2638677/141‑1 (MQ=255)

                                                                                                                       taCTGTTGTTACAAGGTTTCTATGTATCCAAACTGGGGGCAATATAAACGCGCTGATTTAATCGGACAATCTTCTTATATTAAAAATAATGATGTCGTAATATTCAATGAAGCATTTGATAATGGTGCATCAGACAAagta                       >  1:2982301/1‑141 (MQ=255)

                                                                                                                        aCTGTTGTTACAAGGTTTCTATGTATCCAAACTGGGGGCAATATAAACGCGCTGATTTAATCGGACAATCTTCTTATATTAAAAATAATGTTGTCGTAATATTCAATGAAGCATTTGATAATGGTGCATCAGACAAattat                      >  2:498205/1‑141 (MQ=255)

                                                                                                                        aCTGTTGTTACAAGGTTTCTATGTATCCAAACTGGGGGCAATATAAACGCGCTGATTTAATCGGACAATCTTCTTATATTAAAAATAATGATGTCGTAATATTCAATGAAGCATTTGATAATGGTGCATCAGACAAattat                      <  1:2339908/141‑1 (MQ=255)

                                                                                                                        aCTGTTGTTACAAGGTTTCTATGTATCCAAACTGGGGGCAATATAAACGCGCTGATTTAATCGGACAATCTTCTTATATTAAAAATAATGATGTCGTAATATTCAATGAAGCATTTGATAATGGTGCATCAGACAAattat                      >  1:3779653/1‑141 (MQ=255)

                                                                                                                          tgttgtTACAAGGTTTCTAtgtatccaaactggagacttttaacataaaattacttatcattcaaaaagtaaaacagcataatatcaaggtttataactttatcattatcaataatacctcatataaaataaaattttagg                    <  2:865219‑M2/141‑123 (MQ=255)

                                                                                                                          tgttgtTACAAGGTTTCTAtgtatccaaactggagacttttaacataaaattacttatcattcaaaaagtaaaacagcataatatcaaggtttataactttatcattatcaataatacctcatataaaataaaattttagg                    >  1:4209609‑M2/1‑19 (MQ=255)

                                                                                                                           gttgttACAAGGTTTCTAtgtatccaaactggagacttttaacataaaattacttatcattcaaaaagtaaaacagcataatatcaaggtttataactttatcattatcaataatacctcatataaaataaaattttaggg                   <  1:1733945‑M2/141‑124 (MQ=255)

                                                                                                                              gttACAAGGTTTCTATGTATCCAAACTGGGGGCAATATAAACGCGCTGATTTAATCGGACAATCTTCTTATATTAAAAATAATGATGTCGTAATATTCAATGAAGCATTTGATAATGGTGCATCAGACAAATTATTAAGTa                >  1:3138302/1‑141 (MQ=255)

                                                                                                                                tACAAGGTTTCTATGTATCCAAACTGGGGGCAATATAAACGCGCTGATTTAATCGGACAATCTTCTTATATTAAAAATAATGATGTCGTAATATTCAATGAAGCATTTTATAATGGTGCATCCAACAAATTATTAAGTAAt              >  2:249369/1‑141 (MQ=255)

                                                                                                                                tACAAGGTTTCTATGTATCCAAACTGGGGGCAATATAAACGCGCTGATTTAATCGGACAATCTTCTTATATTAAAAATAATGATGTCGTAATATTCAATGAAGCATTTGATAATGGTGCATCAGACAAattgttccgtctt              >  1:303028/1‑134 (MQ=255)

                                                                                                                                 aCAAGGTTTCTATGTATCCAAACTGGGGGCAATATAAACGCGCTGATTTAATCGGACAATCTTCTTATATTAAAAATAATGATGTCGTAGTATTCAATGAAGCATTTGATAATGGTGCATCAGACAAATTATTAAGTAAtg             >  1:162066/1‑141 (MQ=255)

                                                                                                                                     ggTTTCTAtgtatccaaactggagacttttaacataaaattacttatcattcaaaaagtaaaacagcataatatcaaggtttataactttatcattatcaataatacctcatataaaataaaattttagggactttttagg         >  1:1179242‑M2/1‑8 (MQ=255)

                                                                                                                                       tttCTAtgtatccaaactggagacttttaacataaaattacttatcattcaaaaagtaaaacagcataatatcaaggtttataactttatcattatcaataatacctcatataaaataaaattttaggagctttttaggga       <  1:756655‑M2/141‑136 (MQ=255)

                                                                                                                                       tttCTATGTATCCAAACTGGGGGCAATATAAACGCGCTGATTTAATCGGACAATCTTCTTATATTAAACATACTAATATTGTAAGATTCAATGAAGCATTTGATAATGTTGCATCAGACAAATTATTAAGTAATGTGaaaa       <  1:413917/141‑1 (MQ=255)

                                                                                                                                       tttCTATGTATCCAAACTGGGGGCAATATAAACGCGCTGATTTAATCGGACAATCTTCTTATATTAAAAATAATGATGTCGTAATATTCAATGAAGCATTTGATAATGGTGCATCAGACAAATTATTAAGTAATGTGaaaa       <  1:720585/141‑1 (MQ=255)

                                                                                                                                            atgtatccaaactggagacttttaacataaaattacttatcattcaaaaagtaaaacagcataatatcaaggtttataactttatcattatcaataatacctcatataaaataaaattttagggactttttagggacttta  >  1:4262201‑M2/1‑1 (MQ=255)

                                                                                                                                            aTGTATCCAAACTGGGGGCAATATAAACGCGCTGATTTAATCGGACAATCTTCTTATATTAAAAATAATGATGTCGTAATATTCAATGAAGCATTTGATAATGGTGCATCAGACAAATTATTAAGTAATGTGAAAAAAGaa  >  1:3623269/1‑141 (MQ=255)

ACTACATCCGTGTATTCTCATTTGTTAGAAGAAAAATTTAATGAAGAGGACAAAAAAACAACTAAAATTTTAGAAAGTATGTAATTTAGGGACCCATTAGGGACTCCAAACCCAATAAATACTGTTGTTACAAGGTTTCTATGTATCCAAACTGGGGGCAATATAAACGCGCTGATTTAATCGGACAATCTTCTTATATTAAAAATAATGATGTCGTAATATTCAATGAAGCATTTGATAATGGTGCATCAGACAAATTATTAAGTAATGTGAAAAAAGAA  >  USA300TCH1516_ALE/2128203‑2128483

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 12 ≤` `ATCG/ATCG` `< 13 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.