Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	USA300TCH1516_ALE	1337231	1337284	54	2 [1]	[1] 2	glnA	Glutamine synthetase

CTAGTCACCATGAAGTTGCCCCTGGTCAACATGAAATTGACTTTAAATATGCAGATGCTGTTACAGCATGTGATAATATCCAAACATTTAAATTGGTTGTTAAAACAATCGCACGTAAACATAATTTACACGCAACATTTAT  >  USA300TCH1516_ALE/1337284‑1337425  |                                                                                                                                             cTAGTCACCATGAAGTTGCCCCTGGTCAACATGAAATTGACTTTAAATATGCAGATGCTGTTACAGCATGTGATAATATCCAAACATTTAAATTGGTTGTTAAAACAATCGCACGTAAACATAATTTACACGCAACATTTa   <  2:78275/141‑1 (MQ=255)  tAGTCACCATGAAGTTGCCCCTGGTCAACATGAAATTGACTTTAAATATGCAGATGCTGTTACAGCATGTGATAATATCCAAACATTTAAATTGGTTGTTAAAACAATCGCACGTAAACATAATTTACACGCAACATTTAt  <  1:75189/141‑1 (MQ=255)  |                                                                                                                                             CTAGTCACCATGAAGTTGCCCCTGGTCAACATGAAATTGACTTTAAATATGCAGATGCTGTTACAGCATGTGATAATATCCAAACATTTAAATTGGTTGTTAAAACAATCGCACGTAAACATAATTTACACGCAACATTTAT  >  USA300TCH1516_ALE/1337284‑1337425

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑