| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | USA300TCH1516_ALE | 1,338,473 | Δ1 bp | 5.4% | intergenic (+408/‑867) | glnA → / → USA300TCH1516_01240 | Glutamine synthetase/hypothetical protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | USA300TCH1516_ALE | 1,338,473 | 0 | C | . | 5.4% | 460.8 / 17.9 | 129 | intergenic (+408/‑867) | glnA/USA300TCH1516_01240 | Glutamine synthetase/hypothetical protein |
| Reads supporting (aligned to +/- strand): ref base C (78/44); new base . (4/3); total (82/47) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 7.05e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.86e-01 | |||||||||||
Only 100 of 138 total aligned reads displayed.
GTTCTAAGGTAAGACCCCGAAAAGAGGGACCTTACTACGCATTATTAAGGGGGTAATACTATATGAAAAGAGAAACAAAACAAAAA‑ATATCTTTTTGTTTATCGATCGGTATTTTCATTTTAGTTATACTACTATTGATATTCTAAAAAATTAAAAATTTCGCCTCATCTAATTTATGAAT > USA300TCH1516_ALE/1338383‑1338563 | gTTCTAAGGTAAGACCCCGAAAAGAGGGACCTTACTACGCATTATTAAGGGGGTAATACTATATGAAAAGAGAAACAAAACAAAAA‑ATATc < 1:2135029/91‑1 (MQ=255) tCTAAGGTAAGACCCCGAAAAGAGGGACCTTACTATGCATTATTAAGGGGGTAATACTATATGAAAAGAGAAACAAAACAAAAA‑ATATCtt > 1:34621/1‑91 (MQ=255) tCTAAGGTAAGACCCCGAAAAGAGGGACCTTACTACGCATTATTAAGGGGGTAATACTATATGAAAAGAGAAACAAAACAAAAA‑ATATCtt > 1:921416/1‑91 (MQ=255) tCTAAGGTAAGACCCCGAAAAGAGGGACCTTACTACGCATTATTAAGGGGGTAATACTATATGAAAAGAGAAACAAAACAAAAA‑ATATCtt < 1:2373448/91‑1 (MQ=255) cTAAGGTAAGACCCCGAAAAGAGGGACCTTACTACGCATTATTAAGGGGGTAATACTATATGAAAAGAGAAACAAAACAAAAA‑ATATCttt > 1:2136615/1‑91 (MQ=255) aaGGTAAGACCCCGAAAAGAGGGACCTTACTACGCATTATTAAGGGGGTAATACTATATGAAAAGAGAAACAAAACAAAAAGATAtttttt < 1:1013924/91‑1 (MQ=255) aaGGTAAGACCCCGAAAAGAGGGACCTTACTACGCATTATTAAGGGGGTAATACTATATGAAAAGAGAAACAAAACAAAAAGATAtttttt < 1:2198772/91‑1 (MQ=255) aGGTAAGACCCCGAAAAGAGGGACCTTACTACGCATTATTAAGGGGGTAATACTATATGAAAAGAGAAACAAAACAAAAAGATAT‑TTTTTg < 1:1925240/91‑1 (MQ=255) aGGTAAGACCCCGAAAAGAGGGACCTTACTACGCATTATTAAGGGGGTAATACTATATGAAAAGAGAAACAAAACAAAAA‑ATATCTTTTTg < 1:1221000/91‑1 (MQ=255) aGGTAAGACCCCGAAAAGAGGGACCTTACTACGCATTATTAAGGGGGTAATACTATATGAAAAGAGAAACAAAACAAAAA‑ATATCTTTTTg > 1:2001789/1‑91 (MQ=255) ggTAAGACCCCGAAAAGAGGGACCTTACTACGCATTATTAAGGGGGTAATACTATATGAAAAGAGAAACAAAACAAAAAGATAT‑TTTTTGt < 1:3703274/91‑1 (MQ=255) aaGACCCCGAAAAGAGGGACCTTACTACGCATTATTAAGGGGGTAATACTATATGAAAAGAGAAACAAAACAAAAA‑ATATCTTTTTGTTTa > 1:418129/1‑91 (MQ=255) aGACCCCGAAAAGAGGGACCTTACTACGCATTATTAAGGGGGTAATACTATATGAAAAGAGAAACAAAACAAAAA‑ATATCTTTTTGTTTat > 1:3743610/1‑91 (MQ=255) aGACCCCGAAAAGAGGGACCTTACTACGCATTATTAAGGGGGTAATACTATATGAAAAGAGAAACAAAACAAAAA‑ATATCTTTTTGTTTat > 1:1215876/1‑91 (MQ=255) gACCCCGAAAAGAGGGACCTTACTACGCATTATTAAGGGGGTAATACTATATGAAAAGAGAAACAAAACAAAAA‑ATATCTTTTTGTTTatc < 1:2546014/91‑1 (MQ=255) ccccGAAAAGAGGGACCTTACTACGCATTATTAAGGGGGTAATACTATATGAAAAGAGAAACAAAACAAAAA‑ATATCTTTTTGTTTatcga > 1:3688121/1‑91 (MQ=255) cccGAAAAGAGGGACCTTACTACGCATTATTAAGGGGGTAATACTATATGAAAAGAGAAACAAAACAAAAA‑ATATCTTTTTGTTTatcgat < 1:3978410/91‑1 (MQ=255) ccGAAAAGAGGGACCTTACTACGCATTATTAAGGGGGTAATACTATATGAAAAGAGAAACAAAACAAAAA‑ATATCTTTTTGTTTatcgatc < 1:155029/91‑1 (MQ=255) gAAAAGAGGGACCTTACTACGCATTATTAAGGGGGTAATACTATATGAAAAGAGAAACAAAACAAAAA‑ATATCTTTTTGTTTATCGATCgg < 1:1134732/91‑1 (MQ=255) agagGGACCTTACTACGCATTATTAAGGGGGTAATACTATATGAAAAGAGAAACAAAACAAAAA‑ATATCTTTTTGTTTATCGATCGGTAtt > 1:1873600/1‑91 (MQ=255) agagGGACCTTACTACGCATTATTAAGGGGGTAATACTATATGAAAAGAGAAACAAAACAAAAA‑ATATCTTTTTGTTTATCGATCGGTAtt > 1:1873688/1‑91 (MQ=255) agagGGACCTTACTACGCATTATTAAGGGGGTAATACTATATGAAAAGAGAAACAAAACAAAAA‑ATATCTTTTTGTTTATCGATCGGTAtt < 1:4122989/91‑1 (MQ=255) agagGGACCTTACTACGCATTATTAAGGGGGTAATACTATATGAAAAGAGAAACAAAACAAAAA‑ATATCTTTTTGTTTATCGATCGGTAtt > 1:1542038/1‑91 (MQ=255) agagGGACCTTACTACGCATTATTAAGGGGGTAATACTATATGAAAAGAGAAACAAAACAAAAA‑ATATCTTTTTGTTTATCGATCGGTAtt > 1:3455678/1‑91 (MQ=255) agagGGACCTTACTACGCATTATTAAGGGGGTAATACTATATGAAAAGAGAAACAAAACAAAAA‑ATATCTTTTTGTTTATCGATCGGTAtt < 1:624682/91‑1 (MQ=255) agagGGACCTTACTACGCATTATTAAGGGGGTAATACTATATGAAAAGAGAAACAAAACAAAAA‑ATATCTTTTTGTTTATCGATCGGTAtt > 1:1175217/1‑91 (MQ=255) gggACCTTACTACGCATTATTAAGGGGGTAATACTATATGAAAAGAGAAACAAAACAAAAA‑ATATCTTTTTGTTTATCGATCGGTATTTTc > 1:374825/1‑91 (MQ=255) gggACCTTACTACGCATTATTAAGGGGGTAATACTATATGAAAAGAGAAACAAAACAAAAA‑ATATCTTTTTGTTTATCGATCGGTATTTTc > 1:374845/1‑91 (MQ=255) gggACCTTACTACGCATTATTAAGGGGGTAATACTATATGAAAAGAGAAACAAAACAAAAA‑ATATCTTTTTGTTTATCGATCGGTATTTTc > 1:501505/1‑91 (MQ=255) ggACCTTACTACGCATTATTAAGGGGGTAATACTATATGAAAAGAGAAACAAAACAAAAA‑ATATCTTTTTGTTTATCGATCGGTATTTTCa > 1:610542/1‑91 (MQ=255) gACCTTACTACGCATTATTAAGGGGGTAATACTATATGAAAAGAGAAACAAAACAAAAA‑ATATCTTTTTGTTTATCGATCGGTATTTTCAt > 1:1446396/1‑91 (MQ=255) aCCTTACTACGCATTATTAAGGGGGTAATACTATATGAAAAGAGAAACAAAACAAAAA‑ATATCTTTTTGTTTATCGATCGGTATTTTCAtt > 1:3896030/1‑91 (MQ=255) actacGCATTATTAAGGGGGTAATACTATATGAAAAGAGAAACAAAACAAAAA‑ATATCTTTTTGTTTATCGATCGGTATTTTCATTTTAGt > 1:983393/1‑91 (MQ=255) tacGCATTATTAAGGGGGTAATACTATATGAAAAGAGAAACAAAACAAAAA‑ATATCTTTTTGTTTATCGATCGGTATTTTCATTTTAGTta > 1:2376973/1‑91 (MQ=255) acGCATTATTAAGGGGGTAATACTATATGAAAAGAGAAACAAAACAAAAA‑ATATCTTTTTGTTTATCGATCGGTATTTTCATTTTAGTtat < 1:3674748/91‑1 (MQ=255) cGCATTATTAAGGGGGTAATACTATATGAAAAGAGAAACAAAACAAAAA‑ATATCTTTTTGTTTATCGATCGGTATTTTCATTTTAGTtata > 1:4048864/1‑91 (MQ=255) cGCATTATTAAGGGGGTAATACTATATGAAAAGAGAAACAAAACAAAAA‑ATATCTTTTTGTTTATCGATCGGTATTTTCATTTTAGTtata > 1:2425237/1‑91 (MQ=255) cGCATTATTAAGGGGGTAATACTATATGAAAAGAGAAACAAAACAAAAA‑ATATCTTTTTGTTTATCGATCGGTATTTTCATTTTAGTtata > 1:2424818/1‑91 (MQ=255) cGCATTATTAAGGGGGTAATACTATATGAAAAGAGAAACAAAACAAAAA‑ATATCTTTTAGTTTATCGATCGGTATTTTCATTTTAGTtata > 1:3540411/1‑91 (MQ=255) attattAAGGGGGTAATACTATATGAAAAGAGAAACAAAACAAAAA‑ATATCTTTTTGTTTATCGATCGGTATTTTCATTTTAGTTAtacta < 1:1456585/91‑1 (MQ=255) ttattaAGGGGGTAATACTATATGAAAAGAGAAACAAAACAAAAA‑ATATCTTTTTGTTTATCGATCGGTATTTTCATTTTAGTTAtactac > 1:1237303/1‑91 (MQ=255) attaAGGGGGTAATACTATATGAAAAGAGAAACAAAACAAAAA‑ATATCTTTTTGTTTATCGATCGGTATTTTCATTTTAGTTATActacta > 1:131361/1‑91 (MQ=255) attaAGGGGGTAATACTATATGAAAAGAGAAACAAAACAAAAA‑ATATCTTTTTGTTTATCGATCGGTATTTTCATTTTAGTTATActacta > 1:2828193/1‑91 (MQ=255) taAGGGGGTAATACTATATGAAAAGAGAAACAAAACAAAAA‑ATATCTTTTTGTTTATCGATCGGTATTTTCATTTTAGTTATACTACTAtt < 1:4037721/91‑1 (MQ=255) aGGGGGTAATACTATATGAAAAGAGAAACAAAACAAAAA‑ATATCTTTTTGTTTATCGATCGGTATTTTCATTTTAGTTATACTACTATTGa > 1:1815485/1‑91 (MQ=255) aGGGGGTAATACTATATGAAAAGAGAAACAAAACAAAAA‑ATATCTTTTTGTTTATCGATCGGTATTTTCATTTTAGTTATACTACTATTGa > 1:520566/1‑91 (MQ=255) aGGGGGTAATACTATATGAAAAGAGAAACAAAACAAAAA‑ATATCTTTTTGTTTATCGATCGGTATTTTCATTTTAGTTATACTACTATTGa > 1:1249292/1‑91 (MQ=255) aGGGGGTAATACTATATGAAAAGAGAAACAAAACAAAAA‑ATATCTTTTTGTTTATCGATCGGTATTTTCATTTTAGTTATACTACTATTGa > 1:2554229/1‑91 (MQ=255) aGGGGGTAATACTATATGAAAAGAGAAACAAAACAAAAA‑ATATCTTTTTGTTTATCGATCGGTATTTTCATTTTAGTTATACTACTATTGa < 1:3387707/91‑1 (MQ=255) gggggTAATACTATATGAAAAGAGAAACAAAACAAAAA‑ATATCTTTTTGTTTATCGATCGGTATTTTCATTTCAGTTATACTACTATTGat > 1:3138465/1‑91 (MQ=255) ggggTAATACTAGATGAAAAGAGAAACAAAACAAAAA‑ATATCTTTTTGTTTATCGATCGGTATTTTCATTTTAGTTATACTACTATTGata > 1:3185747/1‑91 (MQ=255) gggTAATACTATATGAAAAGAGAAACAAAACAAAAA‑ATATCTTTTTGTTTATCGATCGGTATTTTCATTTTAGTTATACTACTATTGatat < 1:440889/91‑1 (MQ=255) gggTAATACTATATGAAAAGAGAAACAAAACAAAAA‑ATATCTTTTTGTTTATCGATCGGTATTTTCATTTTAGTTATACTACTATTGatat < 1:1881668/91‑1 (MQ=255) gggTAATACTATATGAAAAGAGAAACAAAACAAAAA‑ATATCTTTTTGTTTATCGATCGGTATTTTCATTTTAGTTATACTACTATTGatat < 1:441091/91‑1 (MQ=255) aaTACTATATGAAAAGAGAAACAAAACAAAAA‑ATATCTTTTTGTTTATCGATCGGTATTTTCATTTTAGTTATACTACTATTGATATTCTa > 1:1663175/1‑91 (MQ=255) tataTGAAAAGAGAAACAAAACAAAAA‑ATATCTTTTTGTTTATCGATCGGTATTTTCATTTTAGTTATACTACTATTGATATTCTaaaaaa > 1:1493312/1‑91 (MQ=255) atatGAAAAGAGAAACAAAACAAAAA‑ATATCTTTTTGTTTATCGATCGGTATTTTCATTTTAGTTATACTACTATTGATATTCTAaaaaat < 1:3310543/91‑1 (MQ=255) tatGAAAAGAGAAACAAGACAAAAA‑ATATCTTTTTGTTTATCGATCGGTATTTTCATTTTAGTTATACTACTATTGATATTCTAaaaaatt < 1:3558035/91‑1 (MQ=255) tatGAAAAGAGAAACAAAACAAAAA‑ATATCTTTTTGTTTATCGATCGGTATTTTCATTTTAGTTATACTACTATTGATATTCTAaaaaatt < 1:2252400/91‑1 (MQ=255) tatGAAAAGAGAAACAAAACAAAAA‑ATATCTTTTTGTTTATCGATCGGTATTTTCATTTTAGTTATACTACTATTGATATTCTAaaaaatt < 1:3229702/91‑1 (MQ=255) atGAAAAGAGAAACAAAACAAAAA‑ATATCTTTTTGTTTATCGATCGGTATTTTCATTTTAGTTATACTACTATTGATATTCTAaaaaatta > 1:4128443/1‑91 (MQ=255) aaaGAGAAACAAAACAAAAA‑ATATCTTTTTGTTTATCGATCGGTATTTTCATTTTAGTTATACTACTATTGATATTCTAaaaaattaaaaa > 1:3028113/1‑91 (MQ=255) aaaGAGAAACAAAACAAAAA‑ATATCTTTTTGTTTATCGATCGGTATTTTCATTTTAGTTATACTACTATTGATATTCTAaaaaattaaaaa > 1:2032818/1‑91 (MQ=255) agagAAACAAAACAAAAA‑ATATCTTTTTGTTTATCGATCGGTATTTTCATTTTAGTTATACTACTATTGATATTCTAaaaaattaaaaatt > 1:3420165/1‑91 (MQ=255) agagAAACAAAACAAAAA‑ATATCTTTTTGTTTATCGATCGGTATTTTCATTTTAGTTATACTACTATTGATATTCTAaaaaattaaaaatt > 1:21446/1‑91 (MQ=255) agagAAACAAAACAAAAA‑ATATCTTTTTGTTTATCGATCGGTATTTTCATTTTAGTTATACTACTATTGATATTCTAaaaaattaaaaatt < 1:2432085/91‑1 (MQ=255) agagAAACAAAACAAAAA‑ATATCTTTTTGTTTATCGATCGGTATTTTCATTTTAGTTATACTACTATTGATATTCTAaaaaattaaaaatt < 1:2432013/91‑1 (MQ=255) aaacaaaacaAAAA‑ATATCTTTTTGTTTATCGACCGGCATTTTCATCTTAGTTATACTACTATTGATATTCTAAAAAATTAAAAATTTCGc > 1:3315213/1‑91 (MQ=255) acaaaacaaaAA‑ATATCTTTTTGTTTATCGATCGGTATTTTCATTTTAGTTATACTACTATTGATATTCTAAAAAATTAAACATTTCGCCt > 1:3973506/1‑91 (MQ=255) acaaaacaaaAA‑ATATCTTTTTGTTTATCGATCGGTATTTTCATTTTAGTTATACTACTATTGATATTCTAAAAAATTAAAAATTTCGCCt > 1:4072942/1‑91 (MQ=255) acaaaacaaaAA‑ATATCTTTTTGTTTATCGATCGGTATTTTCATTTTAGTTATACTACTATTGATATTCTAAAAAATTAAAAATTTCGCCt > 1:1965037/1‑91 (MQ=255) acaaaacaaaAA‑ATATCTTTTTGTTTATCGATCGGTATTTTCATTTTAGTTATACTACTATTGATATTCTAAAAAATTAAAAATTTCGCCt > 1:1961124/1‑91 (MQ=255) acaaaacaaaAA‑ATATCTTTTTGTTTATCGATCGGTATTTTCATTTTAGTTATACTACTATTGATATTCTAAAAAATTAAAAATTTCGCCt > 1:1959139/1‑91 (MQ=255) caaaacaaaaA‑ATATCTTTTTGTTTATCGATCGGTATTTTCATTTTAGTTATACTACTATTGATATTCTAAAAAATTAAAAATTTCGCCTc > 1:583670/1‑91 (MQ=255) caaaacaaaaA‑ATATCTTTTTGTTTATCGATCGGTATTTTCATTTTAGTTATACTACTATTGATATTCTAAAAAATTAAAAATTTCGCCTc > 1:583634/1‑91 (MQ=255) caaaacaaaaA‑ATACCTTTTTGTTTATCGATCGGTATTTTCATTTTAGTTATACTACTATTGATATTCTAAAAAATTAAAAATTTCGCCTc > 1:1617812/1‑91 (MQ=255) aaacaaaaA‑ATATCTTTTTGTTTATCGATCGGTATTTTCATTTTAGTTATACTACTATTGATATTCTAAAAAATTAAAAATTTCGCCTCAt > 1:1953386/1‑91 (MQ=255) aaacaaaaA‑ATATCTTTTTGTTTATCGATCGGTATTTTCATTTTAGTTATACTACTATTGATATTCTAAAAAATTAAAAATTTCGCCTCAt > 1:2099925/1‑91 (MQ=255) aaacaaaaA‑ATATCTTTTTGTTTATCGATCGGTATTTTCATTTTAGTTATACTACTATTGATATTCTAAAAAATTAAAAATTTCGCCTCAt < 1:286155/91‑1 (MQ=255) aacaaaaAGATAT‑TTTTTGTTTATCGATCGGTATTTTCATTTTAGTTATACTACTATTGATATTCTAAAAAATTAAAAATTTCGCCTCATc > 1:319745/1‑91 (MQ=255) aacaaaaA‑ATATCTTTTTGTTTATCGATCGGTATTTTCATTTTAGTTATACTACTATTGATATTCTAAAAAATTAAAAATTTCGCCTCATc < 1:370463/91‑1 (MQ=255) aacaaaaA‑ATATCTTTTTGTTTATCGATCGGTATTTTCATTTTAGTTATACTACTATTGATATTCTAAAAAATTAAAAATTTCGCCTCATc > 1:2582851/1‑91 (MQ=255) acaaaaAGATAT‑TTTTTGTTTATCGATCGGTATTTTCATTTTAGTTATACTACTATTGATATTCTAAAAAATTAAAAATTTCGCCTCATCt > 1:646410/1‑91 (MQ=255) acaaaaAGATAT‑TTTTTGTTTATCGATCGGTATTTTCATTTTAGTTATACTACTATTGATATTCTAAAAAATTAAAAATTTCGCCTCATCt > 1:3036565/1‑91 (MQ=255) acaaaaA‑ATATCTTTTTGTTTATCGATCGGTATTTTCATTTTAGTTATACTACTATTGATATTCTAAAAAATTAAAAATTTCGCCTCATCt > 1:2122312/1‑91 (MQ=255) aaaaa‑aTATCTTTTTGTTTATCGATCGGTATTTTCATTTTAGTTATACTACTATTGATATTCTAAAAAATTAAAAATTTCGCCTCATCTaa > 1:2699982/1‑91 (MQ=255) aaaaa‑aTATCTTTTTGTTTATCGATCGGTATTTTCATTTTAGTTATACTACTATTGATATTCTAAAAAATTAAAAATTTCGCCTCATCTaa < 1:2712634/91‑1 (MQ=255) aaaa‑aTATCTTTTTGTTTATCGATCGGTATTTTCATTTTAGTTATACTACTATTGATATTCTAAAAAATTAAAAATTTCGCCTCATCTAAt < 1:399830/91‑1 (MQ=255) aaa‑aTATCTTTTTGTTTATCGATCGGTATTTTCATTTTAGTTATACTACTATTGATATTCTAAAAAATTAAAAATTTCGCCTCATCTAAtt > 1:1729878/1‑91 (MQ=255) aaa‑aTATCTTTTTGTTTATCGATCGGTATTTTCATTTTAGTTATACTACTATTGATATTCTAAAAAATTAAAAATTTCGCCTCATCTAAtt > 1:1824302/1‑91 (MQ=255) aa‑aTATCTTTTTGTTTATCGATCGGTATTTTCATTTTAGTTATACTACTATTGATATTCTAAAAAATTAAAAATTTCGCCTCATCTAAttt < 1:2950062/91‑1 (MQ=255) a‑aTATCTTTTTGTTTATCGATCGGTATTTTCATTTTAGTTATACTACTATTGATATTCTAAAAAATTAAAAATTTCGCCTCATCTAATTTa < 1:491576/91‑1 (MQ=255) a‑aTATCTTTTTGTTTATCGATCGGTATTTTCATTTTAGTTATACTACTATTGATATTCTAAAAAATTAAAAATTTCGCCTCATCTAATTTa < 1:2316134/91‑1 (MQ=255) a‑aTATCTTTTTGTTTATCGATCGGTATTTTCATTTTAGTTATACTACTATTGATATTCTAAAAAATTAAAAATTTCGCCTCATCTAATTTa < 1:2256054/91‑1 (MQ=255) atatCTTTTTGTTTATCGATCGGTATTTTCATTTTAGTTATACTACTATTGATATTCTAAAAAATTAAAAATTTCGCCTCATCTAATTTAt < 1:2235350/91‑1 (MQ=255) tatCTTTTTGTTTATCGATCGGTATTTTCATTTTAGTTATACTACTATTGATATTCTAAAAAATTTAAAATTTCGCCTCATCTAATTTATg > 1:3870637/1‑91 (MQ=255) tatCTTTTTGTTTATCGATCGGTATTTTCATTTTAGTTATACTACTATTGATATTCTAAAAAATTAAAAATTTCGCCTCATCTAATTTATg > 1:2468640/1‑91 (MQ=255) cTTTTTGTTTATCGATCGGTATTTTCATTTTAGTTATACTACTATTGATATTCTAAAAAATTAAAAATTTCGCCTCATCTAATTTATGAAt > 1:2319095/1‑91 (MQ=255) cTTTTTGTTTATCGATCGGTATTTTCATTTTAGTTATACTACTATTGATATTCTAAAAAATTAAAAATTTCGCCTCATCTAATTTATGAAt < 1:1803082/91‑1 (MQ=255) cTTTTTGTTTATCGATCGGTATTTTCATTATAGTTATACTACTATTGATATTCTAAAAAATTAAAAATTTCGCCTCATCTAATTTATGAAt < 1:2304535/91‑1 (MQ=255) | GTTCTAAGGTAAGACCCCGAAAAGAGGGACCTTACTACGCATTATTAAGGGGGTAATACTATATGAAAAGAGAAACAAAACAAAAA‑ATATCTTTTTGTTTATCGATCGGTATTTTCATTTTAGTTATACTACTATTGATATTCTAAAAAATTAAAAATTTCGCCTCATCTAATTTATGAAT > USA300TCH1516_ALE/1338383‑1338563 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |