| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | USA300TCH1516_ALE | 2,309,807 | Δ1 bp | 10.0% | coding (62/1032 nt) | yfiZ_2 ← | putative siderophore transport system permease protein YfiZ |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | USA300TCH1516_ALE | 2,309,807 | 0 | G | . | 10.0% | 368.8 / 34.6 | 110 | coding (62/1032 nt) | yfiZ_2 | putative siderophore transport system permease protein YfiZ |
| Reads supporting (aligned to +/- strand): ref base G (49/50); new base . (7/4); total (56/54) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 5.28e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.82e-01 | |||||||||||
Only 100 of 127 total aligned reads displayed.
ATATCGCTAAAATTAATTTTCGAAGAACCAATCGCCATATTTAAATATATACAAATAAAAAGAAAGCACAA‑ACTCAC‑TATATACGTGAGTGTTGTGCGTCTTTTTCTTTTATGATCTATGGCAGATTGGCTACTTATTTCTTTTATAGCCATTTACTTCCACCTTACTTTTGTTCTTTTTT > USA300TCH1516_ALE/2309717‑2309897 | atatCGCTAAAATTAATTTTCGAAGAACCAATCGCCATATTTAAATATATACAAATAAAAAGAAAGCACAA‑ACTCAC‑TATATACGTGAgtg < 1:1296775/91‑1 (MQ=255)atatCGCTAAAATTAATTTTCGAAGAACCAATCGCCATATTTAAATATATACAAATAAAAAGAAAGCACAA‑ACTCAC‑TATATACGTGAgtg < 1:190869/91‑1 (MQ=255) atCGCTAAAATTAATTTTCGAAGAACCAATCGCCATATTTAAATATATACAAATAAAAAGAAAGCACAA‑ACTCAC‑TATATACGTGAGtgtt > 1:1634348/1‑91 (MQ=255) tCGCTAAAATTAATTTTCGAAGAACCAATCGCCATATTTAAATATATACAAATAAAAAGAAAGCACAA‑ACTCAC‑TATATACGTGAGtgttg > 1:3660081/1‑91 (MQ=255) tCGCTAAAATTAATTTTCGAAGAACCAATCGCCATATTTAAATATATACAAATAAAAAGAAAGCACAA‑ACTCAC‑TATATACGTGAGtgttg > 1:2846979/1‑91 (MQ=255) tCGCTAAAATTAATTTTCGAAGAACCAATCGCCATATTTAAATATATACAAATAAAAAGAAAGCACAA‑ACTCAC‑TATATACGTGAGtgttg > 1:1807953/1‑91 (MQ=255) tCGCTAAAATTAATTTTCGAAGAACCAATCGCCATATTTAAATATATACAAATAAAAAGAAAGCACAA‑ACTCAC‑TATATACGTGAGtgttg < 1:1631083/91‑1 (MQ=255) cGCTAAAATTAATTTTCGAAGAACCAATCGCCATATTTAAATATATACAAATAAAAAGAAAGCACAA‑ACTCAC‑TATATACGTGAGtgttgt < 1:549229/91‑1 (MQ=255) gCTAAAATTAATTTTCGAAGAACCAATCGCCATATTTAAATATATACAAATAAAAAGAAAGCACAACACTCACGTATATA‑GTGAGT‑Ttgtg < 1:1693739/91‑1 (MQ=25) gCTAAAATTAATCTTCGAAGAACCAATCGCCATATTTAAATATATACAAATAAAAAGAAAGCACAA‑ACTCAC‑TATATACGTGAGTGTtgtg > 1:3199174/1‑91 (MQ=255) gCTAAAATTAATCTTCGAAGAACCAATCGCCATATTTAAATATATACAAATAAAAAGAAAGCACAA‑ACTCAC‑TATATACGTGAGTGTtgtg > 1:3198640/1‑91 (MQ=255) cTAAAATTAATTTTCGAAGAACCAATCGCCATATTTAAATATATACAAATAAAAAGAAAGCACAA‑ACTCAC‑TATATACGTGAGTGTTGTGc > 1:342936/1‑91 (MQ=255) tAAAATTAATTTTCGAAGAACCAATCGCCATATTTAAATATATACAAATAAAAAG‑ACGCACAACACTCACGTATATA‑GTGAGT‑TTGTGctt < 1:2415038/91‑3 (MQ=17) tAAAATTAATTTTCGAAGAACCAATCGCCATATTTAAATATATACAAATAAAAAG‑ACGCACAACACTCACGTATATA‑GTGAGT‑TTGTGctt < 1:1932623/91‑3 (MQ=17) aaaaTTAATTTTCGAAGAACCAATCGCCATATTTAAATATATACAAATAAAAAGAAAGCACAACACTCACGTATATA‑GTGAGT‑TTGTGctt < 1:1450632/91‑3 (MQ=21) aaaTTAATTTTCGAAGAACCAATCGCCATATTTAAATATATACAAATAAAAAG‑ACGCACAACACTCACGTATATA‑GTGAGT‑TTGTGctttc < 1:1052232/91‑5 (MQ=9) aattaattTTCGAAGAACCAATCGCCATATTTAAATATATACAAATAAAAAGAAAGCACAA‑ACTCAC‑TATATACGTGAGTGTTGTGCGtct < 1:622983/91‑1 (MQ=255) aattaattTTCGAAGAACCAATCGCCATATTTAAATATATACAAATAAAAAGAAAGCACAA‑ACTCAC‑TATATACGTGAGTGTTGTGCGtct < 1:1963773/91‑1 (MQ=255) attaattTTCGAAGAACCAATCGCCATATTTAAATATATACAAATAAAAAGAAAGCACAA‑ACTCAC‑TATATACGTGAGTGTTGTGCGtctt < 1:3360773/91‑1 (MQ=255) ttaattTTCGAAGAACCAATCGCCATATTTAAATATATACAAATAAAAAGAAAGCACAA‑ACTCAC‑TATATACGTGAGTGTTGTGCGtcttt < 1:113510/91‑1 (MQ=255) aattTTCGAAGAACCAATCGCCATATTTAAATATATACAAATAAAAAGAAAGCACAA‑ACTCAC‑TATATACGTGAGTGTTGTGCGtcttttt > 1:1333460/1‑91 (MQ=255) aattTTCGAAGAACCAATCGCCATATTTAAATATATACAAATAAAAAGAAAGCACAA‑ACTCAC‑TATATACGTGAGTGTTGTGCGtcttttt > 1:2859769/1‑91 (MQ=255) ttttCGAAGAACCAATCGCCATATTTAAATATATATAAATAAAAAGAAAGCACAA‑ACTCAC‑TATATACGTGAGTGTTGTGCGtctttttct > 1:2652277/1‑91 (MQ=255) ttttCGAAGAACCAATCGCCATATTTAAATATATACAAATAAAAAGAAAGCACAA‑ACTCAC‑TATATACGTGAGTGTTGTGCGtctttttct > 1:1767664/1‑91 (MQ=255) ttttCGAAGAACCAATCGCCATATTTAAATATATACAAATAAAAAGAAAGCACAA‑ACTCAC‑TATATACGTGAGTGTTGTGCGtctttttct > 1:2653359/1‑91 (MQ=255) tttCGAAGAACCAATCGCCATATTTAAATATATACAAATAAAAAGAAAGCACAA‑ACTCAC‑TATATACGTGAGTGTTGTGCGtctttttctt < 1:1604221/91‑1 (MQ=255) ttCGAAGAACCAATCGCCATATTTAAATATATACAAATAAAAAGAAAGCACAA‑ACTCAC‑TATATACGTGAGTGTTGTGCGtctttttcttt > 1:2171759/1‑91 (MQ=255) tCGAAGAACCAATCGCCATATTTAAATATATACAAATAAAAAGAAAGCACAA‑ACTCAC‑TATATACGTGAGTGTTGTGCGtctttttctttt < 1:1359783/91‑1 (MQ=255) gaagaaCCAATCGCCATATTTAAATATATACAAATAAAAAGAAAGCACAA‑ACTCAC‑TATATACGTCAGTGTTGTGCGTCTTTTTCTTTTAt > 1:3870321/1‑91 (MQ=255) aagaaCCAATCGCCATATTTAAATATATACAAATAAAAAGAAAGCACAA‑ACTCAC‑TATATACGTGAGTGTTGTGCGTCTTTTTCTTTTATg < 1:3104959/91‑1 (MQ=255) gaaCCAATCGCCATATTTAAATATATACAAATAAAAAGAAAGCACAA‑ACTCAC‑TATATACGTGAGTGTTGTGCGTCTTTTTCTTTTATGAt < 1:1840373/91‑1 (MQ=255) aaCCAATCGCCATATTTAAATATATACAAATAAAAAGAAAGCACAA‑ACTCAC‑TATATACGTGAGTGTTGTGCGTCTTTTTCTTTTATGATc > 1:899480/1‑91 (MQ=255) aCCAATCGCCATATTTAAATATATACAAATAAAAAGAAAGCACAA‑ACTCAC‑TATATACGTGAGTGTTGTGCGTCTTTTTCTTTTATGATCt > 1:491508/1‑91 (MQ=255) ccAATCGCCATATTTAAATATATACAAATAAAAAGAAAGCACAA‑ACTCAC‑TATATACGTGAGTGTTGTGCGTCTTTTTCTTTTATGATCTa < 1:3274478/91‑1 (MQ=255) ccAATCGCCATATTTAAATATATACAAATAAAAAGAAAGCACAA‑ACTCAC‑TATATACGTGAGTGTTGTGCGTCTTTTTCTTTTATGATCTa > 1:1347201/1‑91 (MQ=255) cAATCGCCATATTTAAATATATACAAATAAAAAGAAAGCACAA‑ACTCAC‑TATATACGTGAGTGTTGTGCGTCTTTTTCTTTTATGATCTAt > 1:3947165/1‑91 (MQ=255) aTCGCCATATTTAAATATATACAAATAAAAAGAAAGCACAA‑ACTCAC‑TATATACGTGAGTGTTGTGCGTCTTTTTCTTTTATGATCTATgg > 1:3470902/1‑91 (MQ=255) cGCCATATTTAAATATATACAAATAAAAAGAAAGCACAA‑ACTCAC‑TATATACGTGAGTGTTGTGCGTCTTTTTCTTTTATGATCTATGGCa > 1:2158551/1‑91 (MQ=255) ccATATTTAAATATATACAAATAAAAAGAAAGCACAA‑ACTCAC‑TATATACGTGAGTGTTGTGCGTCTTTTTCTTTTATGATCTATGGCAGa < 1:1792116/91‑1 (MQ=255) cATATTTAAATATATACAAATAAAAAGAAAGCACAA‑ACTCAC‑TATATACGTGAGTGTTGTGCGTCTTTTTCTTTTATGATCTATGGCAGAt < 1:1889061/91‑1 (MQ=255) tatTTAAATATATACAAATAAAAAGAAAGCACAA‑ACTCAC‑TATATACGCGAGTGTTGTGCGTCTTTTTCTTTTATGATCTATGGCAGATTg > 1:253254/1‑91 (MQ=255) tttAAATATATACAAATAAAAAGAAAGCACAA‑ACTCAC‑TATATACGTGAGTGTTGTGCGTCTTTTTCTTTTATGATCTATGGCAGATTGGc < 1:1392145/91‑1 (MQ=255) ttAAATATATACAAATAAAAAGAAAGCACAA‑ACTCAC‑TATATACGTGAGTGTTGTGCGTCTTTTTCTTTTATGATCTATGGCAGATTGGCt < 1:3442777/91‑1 (MQ=255) aaaTATATACAAATAAAAAGAAAGCACAA‑ACTCAC‑TATATACGTGAGTGTTGTGCGTCTTTTTCTTTTATGATCTATGGCAGATTGGCTAc > 1:1110139/1‑91 (MQ=255) aaaTATATACAAATAAAAAGAAAGCACAA‑ACTCAC‑TATATACGTGAGTGTTGTGCGTCTTTTTCTTTTATGATCTATGGCAGATTGGCTAc > 1:4004141/1‑91 (MQ=255) aaaTATATACAAATAAAAAGAAAGCACAA‑ACTCAC‑TATATACGTGAGCGTTGTGCGTCTTTTTCTTTTATGATCTATGGCAGATTGGCTAc < 1:1445249/91‑1 (MQ=255) aaTATATACAAATAAAAAGAAAGCACAA‑ACTCAC‑TATATACGTGAGTGTTGTGCGTCTTTTTCTTTTATGATCTATGGCAGATTGGCTACt > 1:3348928/1‑91 (MQ=255) tatataCAAATAAAAAGAAAGCACAA‑ACTCAC‑TATATACGTGAGTGTTGTGCGTCTTTTTCTTTTATGATCTATGGCAGATTGGCTACTTa > 1:784605/1‑91 (MQ=255) ataCAAATAAAAAGAAAGCACAA‑ACTCAC‑TATATACGTGAGTGTTGTGCGTCTTTTTCTTTTATGATCTATGGCAGATTGGCTACTTAttt < 1:2768699/91‑1 (MQ=255) ataCAAATAAAAAGAAAGCACAA‑ACTCAC‑TATATACGTGAGTGTTGTGCGTCTTTTTCTTTTATGATCTATGGCAGATTGGCTACTTAttt < 1:3741249/91‑1 (MQ=255) cAAATAAAAAGAAAGCACAA‑ACTCAC‑TATATACGTGAGTGTTGTGCGTCTTTTTCTTTTATGATCTATGGCAGATTGGCTACTTATTTCtt > 1:24540/1‑91 (MQ=255) tAAAAAGAAAGCACAA‑ACTCAC‑TATATACGTGAGTGTTGTGCGTCTTTTTCTTTTATGATCTATGGCAGATTGGCTACTTATTTCTTTtat < 1:519779/91‑1 (MQ=255) aaaaaGAAAGCACAA‑ACTCAC‑TATATACGTGAGTGTTGTGCGTCTTTTTCTTTTATGATCTATGGCAGATTGGCTACTTATTTCTTTtata < 1:1025995/91‑1 (MQ=255) aaaaaGAAAGCACAA‑ACTCAC‑TATATACGTGAGTGTTGTGCGTCTTTTTCTTTTATGATCTATGGCAGATTGGCTACTTATTTCTTTtata < 1:3170257/91‑1 (MQ=255) aaagaaagCACAA‑ACTCAC‑TATATACGTGAGTGTTGTGCGTCTTTTTCTTTTATGATCTATGGCAGATTGGCTACTTATTTCTTTTATAGc > 1:2037426/1‑91 (MQ=255) aagaaagCACAA‑ACTCAC‑TATATACGTGAGTGTTGTGCGTCTTTTTCTTTTATGATCTATGGCAGATTGGCTACTTATTTCTTTTATAGcc > 1:3692775/1‑91 (MQ=255) agaaagCACAA‑ACTCAC‑TATATACGTGAGTGTTGTGCGTCTTTTTCTTTTATGATCTATGGCAGATTGGCTACTTATTTCTTTTATAGCCa < 1:745243/91‑1 (MQ=255) agaaagCACAA‑ACTCAC‑TATATACGTGAGTGTTGTGCGTCTTTTTCTTTTATGATCTATGGCAGATTGGCTACTTATTTCTTTTATAGCCa < 1:745256/91‑1 (MQ=255) agaaagCACAA‑ACTCAC‑TATATACGTGAGTGTTGTGCGTCTTTTTCTTTTATGATCTATGGCAGATTGGCTACTTATTTCTTTTATAGCCa < 1:2753651/91‑1 (MQ=255) agaaagCACAA‑ACTCAC‑TATATACGTGAGTGTTGTGCGTCTTTTTCTTTTATGATCTATGGCAGATTGGCTACTTATTTCTTTTATAGCCa < 1:745751/91‑1 (MQ=255) gacgCACAACACTCACGTATATA‑GTGAGT‑TTGTGCGTCTTTTTCTTTTATGATCTATGGCAGATTGGCTACTTATTTCTTTTATAGCCAtt > 1:3892070/4‑91 (MQ=21) aaatCACAA‑ACTCAC‑TATATACGTGAGTGTTGTGCGTCTTTTTCTTTTATGATCTATGGCAGATTGGCTACTTATTTCTTTTATAGACAtt < 1:3272931/91‑1 (MQ=255) aagCACAA‑ACTCAC‑TATATACGTGAGTGTTGTGCGTCTTTTTCTTTTATGATCTATGGCAGATTGGCTACTTATTTCTTTTATAGCCAttt > 1:2921087/1‑91 (MQ=255) aagCACAA‑ACTCAC‑TATATACGTGAGTGTTGTGCGTCTTTTTCTTTTATGATCTATGGCAGATTGGCTACTTATTTCTTTTATAGCCAttt > 1:3642670/1‑91 (MQ=255) gCACAA‑ACTCAC‑TATATACGTGAGTGTTGTGCGTCTTTTTCTTTTATGATCTATGGCAGATTGGCTACTTATTTCTTTTATAGCCATTTAc > 1:4050708/1‑91 (MQ=255) gCACAA‑ACTCAC‑TATATACGTGAGTGTTGTGCGTCTTTTTCTTTTATGATCTATGGCAGATTGGCTACTTATTTCTTTTATAGCCATTTAc > 1:4050544/1‑91 (MQ=255) acaA‑ACTCAC‑TATATACGTGAGTGTTGTGCGTCTTTTTCTTTTATGATCTATGGCAGATTGGCTACTTATTTCTTTTATAGCCATTTACtt < 1:2152867/91‑1 (MQ=255) caA‑ACTCAC‑TATATACGTGAGTGTTGTGCGTCTTTTTCTTTTATGATCTATGGCAGATTGGCTACTTATTTCTTTTATAGCCATTTACTTc < 1:2132608/91‑1 (MQ=255) caA‑ACTCAC‑TATATACGTGAGTGTTGTGCGTCTTTTTCTTTTATGATCTATGGCAGATTGGCTACTTATTTCTTTTATAGCCATTTACTTc < 1:2132592/91‑1 (MQ=255) caA‑ACTCAC‑TATATACGTGAGTGTTGTGCGTCTTTTTCTTTTATGATCTATGGCAGATTGGCTACTTATTTCTTTTATAGCCATTTACTTc > 1:1948769/1‑91 (MQ=255) a‑aCTCAC‑TATATACGTGAGTGTTGTGCGTCTTTTTCTTTTATGATCTATGGCAGATTGGCTACTTATTTCTTTTATAGCCATTTACTTCCa > 1:3982294/1‑91 (MQ=255) a‑aCTCAC‑TATATACGTGAGTGTTGTGCGTCTTTTTCTTTTATGATCTATGGCAGATTGGCTACTTATTTCTTTTATAGCCAATTACTTCCa > 1:3982914/1‑91 (MQ=255) aCTCACGTATATA‑GTGAGT‑TTGTGCGTCTTTTTCTTTTATGATCTATGGCAGATTGGCTACTTATTTCTTTTATAGCCATTTACTTCCAcc > 1:2709528/1‑91 (MQ=38) cTCAC‑TATATACGTGAGTGTTGTGCGTCTTTTTCTTTTATGATCTATGGCAGATTGGCTACTTATTTCTTTTATAGCCATTTACTTCCAcc < 1:2575229/91‑1 (MQ=255) cTCAC‑TATATACGTGAGTGTTGTGCGTCTTTTTCTTTTATGATCTATGGCAGATTGGCTACTTATTTCTTTTATAGCCATTTACTTCCAcc > 1:2709898/1‑91 (MQ=255) tCAC‑TATATACGTGAGTGTTGTGCGTCTTTTTCTTTTATGATCTATGGCAGATTGGCTACTTATTTCTTTTATAGCCATTTACTTCCACCt < 1:3455929/91‑1 (MQ=255) tCAC‑GATATACGTGAGTGTTGTGCGTCTTTTTCTTTTATGATCTATGGCAGATTGGCTACTTATTTCTTTTATAGCCATTTACTTCCACCt < 1:3457231/91‑1 (MQ=255) tCAC‑GATATACGTGAGTGTTGTGCGTCTTTTTCTTTTATGATCTATGGCAGATTGGCTACTTATTTCTTTTATAGCCATTTACTTCCACCt < 1:3456106/91‑1 (MQ=255) cacgtatata‑GTGAGTGTTGTGCGTCTTTTTCTTTTATGATCTATGGCAGATTGGCTACTTATTTCTTTTATAGCCATTTACTTCCACCtt > 1:1643862/5‑91 (MQ=255) cAC‑TATATACGTGAGTGTTGTGCGTCTTTTTCTTTTATGATCTATGGCAGATTGGCTACTTATTTCTTTTATAGCCATTTACTTCCACCtt < 1:1405369/91‑1 (MQ=255) acgtatata‑GTGAGT‑TTGTGCGTCTTTTTCTTTTATGATCTATGGCAGATTGGCTACTTATTTCTTTTATAGCCATTTACTTCCACCTTAc > 1:3631710/4‑91 (MQ=255) acgtatata‑GTGAGT‑TTGTGCGTCTTTTTCTTTTATGATCTATGGCAGATTGGCTACTTATTTCTTTTATAGCCATTTACTTCCACCTTAc > 1:1801376/4‑91 (MQ=255) cgtatata‑GTGAGTGTTGTGCGTCTTTTTCTTTTATGATCTATGGCAGATTGGCTACTTATTTCTTTTATAGCCATTTACTTCCACCTTAc > 1:218015/3‑91 (MQ=255) gtatata‑GTGAGT‑TTGTGCGTCTTTTTCTTTTATGATCTATGGCAGATTGGCTACTTATTTCTTTGATAGCCATTTACTTCCACCTTACtt > 1:3869599/2‑91 (MQ=255) atataCGTGAGTGTTGTGCGTCTTTTTCTTTTATGATCTATGGCAGATTGGCTACTTATTTCTTTTATAGCCATTTACTTCCACCTTACtt < 1:1522985/91‑1 (MQ=255) atataCGTGAGTGTTGTGCGTCTTTTTCTTTTATGATCTATGGCAGATTGGCTACTTATTTCTTTTATAGCCATTTACTTCCACCTTACtt > 1:657/1‑91 (MQ=255) ataCGTGAGTGTTGTGCGTCTTTTTCTTTTATGATCTATGGCAGATTGGCTACTTATTTCTTTTATAGCCATTTACTTCCACCTTACtttt > 1:3900610/1‑91 (MQ=255) ataCGTGAGTGTTGTGCGTCTTTTTCTTTTATGATCTATGGCAGATTGGCTACTTATTTCTTTTATAGCCATTTACTTCCACCTTACtttt > 1:2558803/1‑91 (MQ=255) taCGTGAGTGTTGTGCGTCTTTTTCTTTTATGATCTATGGCAGATTGGCTACTTATTTCTTTTATAGCCATTTACTTCCACCTTACTTTTg < 1:1837645/91‑1 (MQ=255) taCGTGAGTGTTGTGCGTCTTTTTCTTTTATGATCTATGGCAGATTGGCTACTTATTTCTTTTATAGCCATTTACTTCCACCTTACTTTTg < 1:865926/91‑1 (MQ=255) taCGTGAGTGTTGTGCGTCTTTTTCTTTTATGATCTATGGCAGATTGGCTACTTATTTCTTTTATAGCCATTTACTTCCACCTTACTTTTg < 1:3054195/91‑1 (MQ=255) taCGTGAGTGTTGTGCGTCTTTTTCTTTTATGATCTATGGCAGATTGGCTACTTATTTCTTTTATAGCCATTTACTTCCACCTTACTTTTg < 1:3054920/91‑1 (MQ=255) aCGTGAGTGTTGTGCGTCTTTTTCTTTTATGATCTATGGCAGATTGGCTACTTATTTCTTTTATAGCCATTTACTTCCACCTTACTTTTGt > 1:2820790/1‑91 (MQ=255) aCGTGAGTGTTGTGCGTCTTTTTCTTTTATGATCTATGGCAGATTGGCTACTTATTTCTTTTATAGCCATTTACTTCCACCTTACTTTTGt < 1:3250173/91‑1 (MQ=255) aCGTGAGTGTTGTGCGTCTTTTTCTTTTATGATCTATGGCAGATTGGCTACTTATTTCTTTTATAGCCATTTACTTCCACCTTACTTTTGt < 1:355113/91‑1 (MQ=255) aCGTGAGTGTTGTGCGTCTTTTTCTTTTATGATCTATGGCAGATTGGCTACTTATTTCTTTTATAGCCATTTACTTCCACCTTACTTTTGt < 1:871719/91‑1 (MQ=255) tGAGTGTTGTGCGTCTTTTTCTTTTATGATCTATGGCAGATTGGCTACTTATTTCTTTTATAGCCATTTACTTCCACCTTACTTTTGTTCt > 1:1339827/1‑91 (MQ=255) tGAGTGTTGTGCGTCTTTTTCTTTTATGATCTATGGCAGATTGGCTACTTATTTCTTTTATAGCCATTTACTTCCACCTTACTTTTGTTCt > 1:1339798/1‑91 (MQ=255) tgttgtGCGTCTTTTTCTTTTATGATCTATGGCAGATTGGCTACTTATTTCTTTTATAGCCATTTACTTCCACCTTACTTTTGTTCttttt < 1:3758500/91‑1 (MQ=255) tgttgtGCGTCTTTTTCTTTTATGATCTATGGCAGATTGGCTACTTATTTCTTTTATAGCCATTTACTTCCACCTTACTTTTGTTCttttt < 1:3758606/91‑1 (MQ=255) | ATATCGCTAAAATTAATTTTCGAAGAACCAATCGCCATATTTAAATATATACAAATAAAAAGAAAGCACAA‑ACTCAC‑TATATACGTGAGTGTTGTGCGTCTTTTTCTTTTATGATCTATGGCAGATTGGCTACTTATTTCTTTTATAGCCATTTACTTCCACCTTACTTTTGTTCTTTTTT > USA300TCH1516_ALE/2309717‑2309897 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |