| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | USA300TCH1516_ALE | 1,338,468:1 | +G | 8.5% | intergenic (+403/‑872) | glnA → / → USA300TCH1516_01240 | Glutamine synthetase/hypothetical protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | USA300TCH1516_ALE | 1,338,468 | 1 | . | G | 8.5% | 475.8 / 39.6 | 118 | intergenic (+403/‑872) | glnA/USA300TCH1516_01240 | Glutamine synthetase/hypothetical protein |
| Reads supporting (aligned to +/- strand): ref base . (74/34); new base G (4/6); total (78/40) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 8.62e-02 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.45e-01 | |||||||||||
Only 100 of 139 total aligned reads displayed.
AGAACGTTCTAAGGTAAGACCCCGAAAAGAGGGACCTTACTACGCATTATTAAGGGGGTAATACTATATGAAAAGAGAAACAAAACAAAAA‑ATATCTTTTTGTTTATCGATCGGTATTTTCATTTTAGTTATACTACTATTGATATTCTAAAAAATTAAAAATTTCGCCTCATCTAATTTA > USA300TCH1516_ALE/1338378‑1338558 | aGAACGTTCTAAGGTAAGACCCCGAAAAGAGGGACCTTACTACGCATTATTAAGGGGGTAATACTATATGAAAAGAGAAACAAAACaaaaa < 1:1192820/91‑1 (MQ=255)aGAACGTTCTAAGGTAAGACCCCGAAAAGAGGGACCTTACTACGCATTATTAAGGGGGTAATACTATATGAAAAGAGAAACAAAACaaaaa < 1:3117592/91‑1 (MQ=255) gAACGTTCTAAGGTAAGGCCCCGAAAAGAGGGACCTTACTACGCATTATTAAGGGGGTAATACTATATGAAAAGAGAAACAAAACaaaaa‑a < 1:2646365/91‑1 (MQ=255) gAACGTTCTAAGGTAAGACCCCGAAAAGAGGGACCTTACTACGCATTATTAAGGGGGTAATACTATATGAAAAGAGAAACAAAACaaaaa‑a < 1:758872/91‑1 (MQ=255) gAACGTTCTAAGGTAAGACCCCGAAAAGAGGGACCTTACTACGCATTATTAAGGGGGTAATACTATATGAAAAGAGAAACAAAACaaaaa‑a < 1:1951059/91‑1 (MQ=255) gAACGTTCTAAGGTAAGACCCCGAAAAGAGGGACCTTACTACGCATTATTAAGGGGGTAATACTATATGAAAAGAGAAACAAAACaaaaa‑a > 1:3014316/1‑91 (MQ=255) aCGTTCTAAGGTAAGACCCCGAAAAGAGGGACCTTACTACGCATTATTAAGGGGGTAATACTATATGAAAAGAGAAACAAAACAAAAA‑ata > 1:2592694/1‑91 (MQ=255) aCGTTCTAAGGTAAGACCCCGAAAAGAGGGACCTTACTACGCATTATTAAGGGGGTAATACTATATGAAAAGAGAAACAAAACAAAAA‑ata > 1:263890/1‑91 (MQ=255) cGTTCTAAGGTAAGACCCCGAAAAGAGGGACCTTACTACGCATTATTAAGGGGGTAATACTATATGAAAAGAGAAACAAAACAAAAA‑atat > 1:2127226/1‑91 (MQ=255) gTTCTATGGTAAGACCCCGAAAAGAGGGACCTTACTACGCATTATTAAGGGGGTAATACTATATGAAAAGAGAAACAAAACAAAAA‑ATATc > 1:3224163/1‑91 (MQ=255) gTTCTAAGGTAAGACCCCGAAAAGAGGGACCTTACTACGCATTATTAAGGGGGTAATACTATATGAAAAGAGAAACAAAACAAAAA‑ATATc < 1:2135029/91‑1 (MQ=255) ttCTAAGGTAAGACCCCGAAAAGAGGGACCTTACTACGCATTATTAAGGGGGTAATACTATATGAAAAGAGAAACAAAACAAAAA‑ATATCt < 1:1368192/91‑1 (MQ=255) tCTAAGGTAAGACCCCGAAAAGAGGGACCTTACTATGCATTATTAAGGGGGTAATACTATATGAAAAGAGAAACAAAACAAAAA‑ATATCtt > 1:34621/1‑91 (MQ=255) tCTAAGGTAAGACCCCGAAAAGAGGGACCTTACTACGCATTATTAAGGGGGTAATACTATATGAAAAGAGAAACAAAACAAAAA‑ATATCtt < 1:2373448/91‑1 (MQ=255) tCTAAGGTAAGACCCCGAAAAGAGGGACCTTACTACGCATTATTAAGGGGGTAATACTATATGAAAAGAGAAACAAAACAAAAA‑ATATCtt > 1:921416/1‑91 (MQ=255) cTAAGGTAAGACCCCGAAAAGAGGGACCTTACTACGCATTATTAAGGGGGTAATACTATATGAAAAGAGAAACAAAACAAAAA‑ATATCttt > 1:2136369/1‑91 (MQ=255) cTAAGGTAAGACCCCGAAAAGAGGGACCTTACTACGCATTATTAAGGGGGTAATACTATATGAAAAGAGAAACAAAACAAAAA‑ATATCttt > 1:4028998/1‑91 (MQ=255) tAAGGTAAGACCCCGAAAAGAGGGACCTTACTACGCATTATTAAGGGGGTAATACTATATGAAAAGAGAAACAAAACAAAAA‑ATATCtttt > 1:3082729/1‑91 (MQ=255) aaGGTAAGACCCCGAAAAGAGGGACCTTACTACGCATTATTAAGGGGGTAATACTATATGAAAAGAGAAACAAAACAAAAAGATAtttttt < 1:1013924/91‑1 (MQ=255) aaGGTAAGACCCCGAAAAGAGGGACCTTACTACGCATTATTAAGGGGGTAATACTATATGAAAAGAGAAACAAAACAAAAAGATAtttttt < 1:2198772/91‑1 (MQ=255) aaGGTAAGACCCCGAAAAGAGGGACCTTACTACGCATTATTAAGGGGGTAATACTATATGAAAAGAGAAACAAAACAAAAAGATAtttttt < 1:3004820/91‑1 (MQ=255) aaGGTAAGACCCCGAAAAGAGGGACCTTACTACGCATTATTAAGGGGGTAATACTATATGAAAAGAGAAACAAAACAAAAA‑ATATCttttt < 1:3961773/91‑1 (MQ=255) aGGTAAGACCCCGAAAAGAGGGACCTTACTACGCATTATTAAGGGGGTAATACTATATGAAAAGAGAAACAAAACAAAAAGATAT‑TTTTTg < 1:1925240/91‑1 (MQ=255) aGGTAAGACCCCGAAAAGAGGGACCTTACTACGCATTATTAAGGGGGTAATACTATATGAAAAGAGAAACAAAACAAAAAGATAT‑TTTTTg < 1:597068/91‑1 (MQ=255) aGGTAAGACCCCGAAAAGAGGGACCTTACTACGCATTATTAAGGGGGTAATACTATATGAAAAGAGAAACAAAACAAAAA‑ATATCTTTTTg < 1:1221000/91‑1 (MQ=255) aGGTAAGACCCCGAAAAGAGGGACCTTACTACGCATTATTAAGGGGGTAATACTATATGAAAAGAGAAACAAAACAAAAA‑ATATCTTTTTg > 1:2001789/1‑91 (MQ=255) ggTAAGACCCCGAAAAGAGGGACCTTACTACGCATTATTAAGGGGGTAATACTATATGAAAAGAGAAACAAAACAAAAAGATAT‑TTTTTGt < 1:3703274/91‑1 (MQ=255) aaGACCCCGAAAAGAGGGACCTTACTACGCATTATTAAGGGGGTAATACTATATGAAAAGAGAAACAAAACAAAAA‑ATATCTTTTTGTTTa > 1:418129/1‑91 (MQ=255) aGACCCCGAAAAGAGGGACCTTACTACGCATTATTAAGGGGGTAATACTATATGAAAAGAGAAACAAAACAAAAA‑ATATCTTTTTGTTTat > 1:1215876/1‑91 (MQ=255) aGACCCCGAAAAGAGGGACCTTACTACGCATTATTAAGGGGGTAATACTATATGAAAAGAGAAACAAAACAAAAA‑ATATCTTTTTGTTTat > 1:3743610/1‑91 (MQ=255) cccGAAAAGAGGGACCTTACTACGCATTATTAAGGGGGTAATACTATATGAAAAGAGAAACAAAACAAAAA‑ATATCTTTTTGTTTatcgat < 1:3978410/91‑1 (MQ=255) cccGAAAAGAGGGACCTTACTACGCATTATTAAGGGGGTAATACTATATGAAAAGAGAAACAAAACAAAAA‑ATATCTTTTTGTTTatcgat < 1:1892244/91‑1 (MQ=255) gAAAAGAGGGACCTTACTACGCATTATTAAGGGGGTAATACTATATGAAAAGAGAAACAAAACAAAAA‑ATATCTTTTTGTTTATCGATCgg < 1:1134732/91‑1 (MQ=255) aaaGAGGGACCTTACTACGCATTATTAAGGGGGTAATACTATATGAAAAGAGAAACAAAACAAAAA‑ATATCTTTTTGTTTATCGATCGGTa < 1:460168/91‑1 (MQ=255) agagGGACCTTACTACGCATTATTAAGGGGGTAATACTATATGAAAAGAGAAACAAAACAAAAA‑ATATCTTTTTGTTTATCGATCGGTAtt > 1:1542038/1‑91 (MQ=255) agagGGACCTTACTACGCATTATTAAGGGGGTAATACTATATGAAAAGAGAAACAAAACAAAAA‑ATATCTTTTTGTTTATCGATCGGTAtt > 1:1175217/1‑91 (MQ=255) agagGGACCTTACTACGCATTATTAAGGGGGTAATACTATATGAAAAGAGAAACAAAACAAAAA‑ATATCTTTTTGTTTATCGATCGGTAtt < 1:624682/91‑1 (MQ=255) agagGGACCTTACTACGCATTATTAAGGGGGTAATACTATATGAAAAGAGAAACAAAACAAAAA‑ATATCTTTTTGTTTATCGATCGGTAtt > 1:3455678/1‑91 (MQ=255) agagGGACCTTACTACGCATTATTAAGGGGGTAATACTATATGAAAAGAGAAACAAAACAAAAA‑ATATCTTTTTGTTTATCGATCGGTAtt < 1:4122989/91‑1 (MQ=255) agagGGACCTTACTACGCATTATTAAGGGGGTAATACTATATGAAAAGAGAAACAAAACAAAAA‑ATATCTTTTTGTTTATCGATCGGTAtt > 1:1873600/1‑91 (MQ=255) agagGGACCTTACTACGCATTATTAAGGGGGTAATACTATATGAAAAGAGAAACAAAACAAAAA‑ATATCTTTTTGTTTATCGATCGGTAtt > 1:1873688/1‑91 (MQ=255) gggACCTTACTACGCATTATTAAGGGGGTAATACTATATGAAAAGAGAAACAAAACAAAAA‑ATATCTTTTTGTTTATCGATCGGTATTTTc > 1:374825/1‑91 (MQ=255) gggACCTTACTACGCATTATTAAGGGGGTAATACTATATGAAAAGAGAAACAAAACAAAAA‑ATATCTTTTTGTTTATCGATCGGTATTTTc > 1:501505/1‑91 (MQ=255) gACCTTACTACGCATTATTAAGGGGGTAATACTATATGAAAAGAGAAACAAAACAAAAA‑ATATCTTTTTGTTTATCGATCGGTATTTTCAt > 1:1446396/1‑91 (MQ=255) aCCTTACTACGCATTATTAAGGGGGTAATACTATATGAAAAGAGAAACAAAACAAAAA‑ATATCTTTTTGTTTATCGATCGGTATTTTCAtt > 1:3896030/1‑91 (MQ=255) cTTACTACGCATTATTAAGGGGGTAATACTATATGAAAAGAGAAACAAAACAAAAA‑ATATCTTTTTGTTTATCGATCGGTATTTTCAtttt > 1:3697569/1‑91 (MQ=255) actacGCATTATTAAGGGGGTAATACTATATGAAAAGAGAAACAAAACAAAAA‑ATATCTTTTTGTTTATCGATCGGTATTTTCATTTTAGt > 1:983393/1‑91 (MQ=255) tacGCATTATTAAGGGGGTAATACTATATGAAAAGAGAAACAAAACAAAAA‑ATATCTTTTTGTTTATCGATCGGTATTTTCATTTTAGTta > 1:2376973/1‑91 (MQ=255) acGCATTATTAAGGGGGTAATACTATATGAAAAGAGAAACAAAACAAAAA‑ATATCTTTTTGTTTATCGATCGGTATTTTCATTTTAGTtat < 1:3674748/91‑1 (MQ=255) cGCATTATTAAGGGGGTAATACTATATGAAAAGAGAAACAAAACAAAAA‑ATATCTTTTTGTTTATCGATCGGTATTTTCATTTTAGTtata > 1:4048864/1‑91 (MQ=255) cGCATTATTAAGGGGGTAATACTATATGAAAAGAGAAACAAAACAAAAA‑ATATCTTTTTGTTTATCGATCGGTATTTTCATTTTAGTtata > 1:2425237/1‑91 (MQ=255) cGCATTATTAAGGGGGTAATACTATATGAAAAGAGAAACAAAACAAAAA‑ATATCTTTTTGTTTATCGATCGGTATTTTCATTTTAGTtata > 1:2424818/1‑91 (MQ=255) cGCATTATTAAGGGGGTAATACTATATGAAAAGAGAAACAAAACAAAAA‑ATATCTTTTAGTTTATCGATCGGTATTTTCATTTTAGTtata > 1:3540411/1‑91 (MQ=255) attattAAGGGGGTAATACTATATGAAAAGAGAAACAAAACAAAAA‑ATATCTTTTTGTTTATCGATCGGTATTTTCATTTTAGTTAtacta < 1:1456585/91‑1 (MQ=255) ttattaAGGGGGTAATACTATATGAAAAGAGAAACAAAACAAAAA‑ATATCTTTTTGTTTATCGATCGGTATTTTCATTTTAGTTAtactac > 1:556731/1‑91 (MQ=255) tattaAGGGGGTAATACTATATGAAAAGAGAAACAAAACAAAAA‑ATATCTTTTTGTTTATCGATCGGTATTTTCATTTTAGTTATactact > 1:2528008/1‑91 (MQ=255) attaAGGGGGTAATACTATATGAAAAGAGAAACAAAACAAAAA‑ATATCTTTTTGTTTATCGATCGGTATTTTCATTTTAGTTATActacta > 1:2828193/1‑91 (MQ=255) taAGGGGGTAATACTATATGAAAAGAGAAACAAAACAAAAA‑ATATCTTTTTGTTTATCGATCGGTATTTTCATTTTAGTTATACTACTAtt < 1:2060746/91‑1 (MQ=255) aGGGGGTAATACTATATGAAAAGAGAAACAAAACAAAAA‑ATATCTTTTTGTTTATCGATCGGTATTTTCATTTTAGTTATACTACTATTGa < 1:3387707/91‑1 (MQ=255) aGGGGGTAATACTATATGAAAAGAGAAACAAAACAAAAA‑ATATCTTTTTGTTTATCGATCGGTATTTTCATTTTAGTTATACTACTATTGa > 1:3792352/1‑91 (MQ=255) aGGGGGTAATACTATATGAAAAGAGAAACAAAACAAAAA‑ATATCTTTTTGTTTATCGATCGGTATTTTCATTTTAGTTATACTACTATTGa > 1:1249292/1‑91 (MQ=255) aGGGGGTAATACTATATGAAAAGAGAAACAAAACAAAAA‑ATATCTTTTTGTTTATCGATCGGTATTTTCATTTTAGTTATACTACTATTGa > 1:1249125/1‑91 (MQ=255) aGGGGGTAATACTATATGAAAAGAGAAACAAAACAAAAA‑ATATCTTTTTGTTTATCGATCGGTATTTTCATTTTAGTTATACTACTATTGa < 1:1619907/91‑1 (MQ=255) aGGGGGTAATACTATATGAAAAGAGAAACAAAACAAAAA‑ATATCTTTTTGTTTATCGATCGGTATTTTCATTTTAGTTATACTACTATTGa > 1:2554229/1‑91 (MQ=255) aGGGGGTAATACTATATGAAAAGAGAAACAAAACAAAAA‑ATATCTTTTTGTTTATCGATCGGTATTTTCATTTTAGTTATACTACTATTGa > 1:1815485/1‑91 (MQ=255) aGGGGGTAATACTATATGAAAAGAGAAACAAAACAAAAA‑ATATCTTTTTGTTTATCGATCGGTATTTTCATTTTAGTTATACTACTATTGa > 1:520566/1‑91 (MQ=255) aGGGGGTAATACTATATGAAAAGAGAAACAAAACAAAAA‑ATATCTTTTTGTTTATCGATCGGTATTTTCATTTTAGTTATACTACTATTGa > 1:2554621/1‑91 (MQ=255) gggggTAATACTATATGAAAAGAGAAACAAAACAAAAA‑ATATCTTTTTGTTTATCGATCGGTATTTTCATTTCAGTTATACTACTATTGat > 1:3138465/1‑91 (MQ=255) ggggTAATACTAGATGAAAAGAGAAACAAAACAAAAA‑ATATCTTTTTGTTTATCGATCGGTATTTTCATTTTAGTTATACTACTATTGata > 1:3185747/1‑91 (MQ=255) gggTAATACTATATGAAAAGAGAAACAAAACAAAAA‑ATATCTTTTTGTTTATCGATCGGTATTTTCATTTTAGTTATACTACTATTGatat < 1:1842166/91‑1 (MQ=255) gggTAATACTATATGAAAAGAGAAACAAAACAAAAA‑ATATCTTTTTGTTTATCGATCGGTATTTTCATTTTAGTTATACTACTATTGatat < 1:441091/91‑1 (MQ=255) aaTACTATATGAAAAGAGAAACAAAACAAAAA‑ATATCTTTTTGTTTATCGATCGGTATTTTCATTTTAGTTATACTACTATTGATATTCTa > 1:1663175/1‑91 (MQ=255) atatGAAAAGAGAAACAAAACAAAAA‑ATATCTTTTTGTTTATCGATCGGTATTTTCATTTTAGTTATACTACTATTGATATTCTAaaaaat < 1:3310543/91‑1 (MQ=255) tatGAAAAGAGAAACAAGACAAAAA‑ATATCTTTTTGTTTATCGATCGGTATTTTCATTTTAGTTATACTACTATTGATATTCTAaaaaatt < 1:3558035/91‑1 (MQ=255) tatGAAAAGAGAAACAAAACAAAAA‑ATATCTTTTTGTTTATCGATCGGTATTTTCATTTTAGTTATACTACTATTGATATTCTAaaaaatt < 1:3229702/91‑1 (MQ=255) tatGAAAAGAGAAACAAAACAAAAA‑ATATCTTTTTGTTTATCGATCGGTATTTTCATTTTAGTTATACTACTATTGATATTCTAaaaaatt < 1:2252400/91‑1 (MQ=255) atGAAAAGAGAAACAAAACAAAAA‑ATATCTTTTTGTTTATCGATCGGTATTTTCATTTTAGTTATACTACTATTGATATTCTAaaaaatta > 1:4128443/1‑91 (MQ=255) agagAAACAAAACAAAAA‑ATATCTTTTTGTTTATCGATCGGTATTTTCATTTTAGTTATACTACTATTGATATTCTAaaaaattaaaaatt > 1:3420165/1‑91 (MQ=255) agagAAACAAAACAAAAA‑ATATCTTTTTGTTTATCGATCGGTATTTTCATTTTAGTTATACTACTATTGATATTCTAaaaaattaaaaatt > 1:21446/1‑91 (MQ=255) agagAAACAAAACAAAAA‑ATATCTTTTTGTTTATCGATCGGTATTTTCATTTTAGTTATACTACTATTGATATTCTAaaaaattaaaaatt < 1:2432013/91‑1 (MQ=255) agagAAACAAAACAAAAA‑ATATCTTTTTGTTTATCGATCGGTATTTTCATTTTAGTTATACTACTATTGATATTCTAaaaaattaaaaatt < 1:2432085/91‑1 (MQ=255) aacaaaacaaAAA‑ATATCTTTTTGTTTATCGATCGGTATTTTCATTTTAGTTATACTACTATTGATATTCTAAAAAATTAAAAATTTCGcc < 1:1528606/91‑1 (MQ=255) acaaaacaaaAA‑ATATCTTTTTGTTTATCGATCGGTATTTTCATTTTAGTTATACTACTATTGATATTCTAAAAAATTAAAAATTTCGCCt > 1:1959139/1‑91 (MQ=255) acaaaacaaaAA‑ATATCTTTTTGTTTATCGATCGGTATTTTCATTTTAGTTATACTACTATTGATATTCTAAAAAATTAAAAATTTCGCCt > 1:1965037/1‑91 (MQ=255) acaaaacaaaAA‑ATATCTTTTTGTTTATCGATCGGTATTTTCATTTTAGTTATACTACTATTGATATTCTAAAAAATTAAAAATTTCGCCt > 1:1958863/1‑91 (MQ=255) acaaaacaaaAA‑ATATCTTTTTGTTTATCGATCGGTATTTTCATTTTAGTTATACTACTATTGATATTCTAAAAAATTAAAAATTTCGCCt > 1:4072942/1‑91 (MQ=255) caaaacaaaaA‑ATATCTTTTTGTTTATCGATCGGTATTTTCATTTTAGTTATACTACTATTGATATTCTAAAAAATTAAAAATTTCGCCTc > 1:583670/1‑91 (MQ=255) caaaacaaaaA‑ATACCTTTTTGTTTATCGATCGGTATTTTCATTTTAGTTATACTACTATTGATATTCTAAAAAATTAAAAATTTCGCCTc > 1:1617812/1‑91 (MQ=255) aaacaaaaA‑ATATCTTTTTGTTTATCGATCGGTATTTTCATTTTAGTTATACTACTATTGATATTCTAAAAAATTAAAAATTTCGCCTCAt > 1:2099925/1‑91 (MQ=255) aaacaaaaA‑ATATCTTTTTGTTTATCGATCGGTATTTTCATTTTAGTTATACTACTATTGATATTCTAAAAAATTAAAAATTTCGCCTCAt > 1:1968480/1‑91 (MQ=255) aacaaaaA‑ATATCTTTTTGTTTATCGATCGGTATTTTCATTTTAGTTATACTACTATTGATATTCTAAAAAATTAAAAATTTCGCCTCATc < 1:370463/91‑1 (MQ=255) acaaaaAGATAT‑TTTTTGTTTATCGATCGGTATTTTCATTTTAGTTATACTACTATTGATATTCTAAAAAATTAAAAATTTCGCCTCATCt > 1:3036565/1‑91 (MQ=255) acaaaaAGATAT‑TTTTTGTTTATCGATCGGTATTTTCATTTTAGTTATACTACTATTGATATTCTAAAAAATTAAAAATTTCGCCTCATCt > 1:1736626/1‑91 (MQ=255) acaaaaAGATAT‑TTTTTGTTTATCGATCGGTATTTTCATTTTAGTTATACTACTATTGATATTCTAAAAAATTAAAAATTTCGCCTCATCt > 1:646410/1‑91 (MQ=255) aaaaa‑aTATCTTTTTGTTTATCGATCGGTATTTTCATTTTAGTTATACTACTATTGATATTCTAAAAAATTAAAAATTTCGCCTCATCTaa < 1:2712634/91‑1 (MQ=255) aaaa‑aTATCTTTTTGTTTATCGATCGGTATTTTCATTTTAGTTATACTACTATTGATATTCTAAAAAATTAAAAATTTCGCCTCATCTAAt < 1:399830/91‑1 (MQ=255) aaa‑aTATCTTTTTGTTTATCGATCGGTATTTTCATTTTAGTTATACTACTATTGATATTCTAAAAAATTAAAAATTTCGCCTCATCTAAtt < 1:2255727/91‑1 (MQ=255) aa‑aTATCTTTTTGTTTATCGATCGGTATTTTCATTTTAGTTATACTACTATTGATATTCTAAAAAATTAAAAATTTCGCCTCATCTAAttt < 1:2950062/91‑1 (MQ=255) a‑aTATCTTTTTGTTTATCGATCGGTATTTTCATTTTAGTTATACTACTATTGATATTCTAAAAAATTAAAAATTTCGCCTCATCTAATTTa < 1:2318065/91‑1 (MQ=255) a‑aTATCTTTTTGTTTATCGATCGGTATTTTCATTTTAGTTATACTACTATTGATATTCTAAAAAATTAAAAATTTCGCCTCATCTAATTTa < 1:2256054/91‑1 (MQ=255) | AGAACGTTCTAAGGTAAGACCCCGAAAAGAGGGACCTTACTACGCATTATTAAGGGGGTAATACTATATGAAAAGAGAAACAAAACAAAAA‑ATATCTTTTTGTTTATCGATCGGTATTTTCATTTTAGTTATACTACTATTGATATTCTAAAAAATTAAAAATTTCGCCTCATCTAATTTA > USA300TCH1516_ALE/1338378‑1338558 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |