| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | 1803422 = | 0 (0.000) | 7 (0.070) | 4/154 | NT | 100% | coding (446/807 nt) | USA300HOU_RS12765 | hypothetical protein |
| ? | USA300TCH1516_ALE | 1803448 = | NA (NA) | coding (420/807 nt) | USA300HOU_RS12765 | hypothetical protein | |||||
AATAGGTTTTAAAAGATATGCATACCGTAATGATAGATATGGTTTTAAACGAGACTTCAAACTATATGAATGTGATGACTGTTCATCATGTTC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/1803514‑1803422‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttcATATAGTTTGAAGTCTCGTTTAAAACCATATCTATCATTACGGTATGCATATCTTTTAAAACCTATTCTTTTGTTATTAGGACATATAA > USA300TCH1516_ALE/1803448‑1803536 AATAGGTTTTAAAAGATATGCATACCGTAATGATAGATATGGTTTTAAACGAGACTTCAAACTATATGAATGTGATGACTGTTCATCATGT < 1:2438413/91‑1AATAGGTTTTAAAAGATATGCATACCGTAATGATAGATATGGTTTTAAACGAGACTTCAAACTATATGAATGTGATGACTGTTCATCATGT > 1:2759444/1‑91AATAGGTTTTAAAAGATATGCATACCGTAATGATAGATATGGTTTTAAACGAGACTTCAAACTATATGAATGTGATGACTGTTCATCATGT < 1:297515/91‑1 ATAGGTTTTAAAAGATATGCATACCGTAATGATAGATATGGTTTTAAACGAGACTTCAAACTATATGAATGTGATGACTGTTCATCATGTT < 1:3143736/91‑1 ATAGGTTTTAAAAGATATGCATACCGTAATGATAGATATGGTTTTAAACGAGACTTCAAACTATATGAATGTGATGACTGTTCATCATGTT > 1:182354/1‑91 TAGGTTTTAAAAGATATGCATACCGTAATGATAGATATGGTTTTAAACGAGACTTCAAACTATATGAATGTGATGACTGTTCATCATGTTC > 1:753624/1‑91 TATATGAATGTGATGACTGTTCATCATGTTCATATAGTTTGAAGTCTCGTTTAAAACCATATCTATCATTACGGTATGCATATCTTTTAAA > 1:2847337/1‑91 TATGAATGTGTTGACTGTTCATCATGTTCATATAGTTTGAAGTCTCGTTTAAAACCATATCTATCATTACGGTATGCATATCTTTTAAAAC > 1:2941824/1‑91 TATGAATGTGATGACTGTTCATCATGTTCATATAGTTTGAAGTCTCGTTTAAAACCATATCTATCATTACGGTATGCATATCTTTTAAAAC > 1:3994972/1‑91 ATGAATGTGATGACTGTTCATCATGTTCATATAGTTTGAAGTCTCGTTTAAAACCATATCTATCATTACGGTATGCATATCTTTTAAAACC > 1:569661/1‑91 TGAATGTGATGACTGTTCATCATGTTCATATAGCTTGAAGTCACGTTTAAAACTATATCTATCATTACGGTATGCATATCTTTTAAAACCT > 1:2613218/1‑91 TGAATGTGATGACTGTTCATCATGTTCATATAGCTTGAAGTCACGTTTAAAACTATATCTATCATTACGGTATGCATATCTTTTAAAACCT > 1:664354/1‑91 GAATGTGATGACTGTTCATCATGTTCATATAGTTTGAAGTCTCGTTTAAAACCATATCTATCATTACGGTATGCATATCTTTTAAAACCTA > 1:933747/1‑91 TTCATATAGTTTGAAGTCTCGTTTAAAACCATATCTATCATTACGGTATGCATATCTTTTAAAACCTATTCTTTTGTTATTAGGACATATA < 1:529523/91‑1 TTCATATAGTTTGAAGTCTCGTTTAAAACCATATCTATCATTACGGTATGCATATCTTTTAAAACCTATTCTTTTGTTATTAGGACATATA < 1:528906/91‑1 TCATATAGTTTGAAGTCTCGTTTAAAACCATATCTATCATTACGGTATGCATATCTTTTAAAACCTATTCTTTTGTTATTAGGACATATAA > 1:3812543/1‑91 TCATATAGTTTGAAGTCTCGTTTAAAACCATATCTATCATTACGGTATGCATATCTTTTAAAACCTATTCTTTTGTTATTAGGACATATAA > 1:3783858/1‑91 AATAGGTTTTAAAAGATATGCATACCGTAATGATAGATATGGTTTTAAACGAGACTTCAAACTATATGAATGTGATGACTGTTCATCATGTTC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/1803514‑1803422‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttcATATAGTTTGAAGTCTCGTTTAAAACCATATCTATCATTACGGTATGCATATCTTTTAAAACCTATTCTTTTGTTATTAGGACATATAA > USA300TCH1516_ALE/1803448‑1803536 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |