| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | = 492723 | 72 (0.730) | 13 (0.170) | 8/128 | NT | 18.2% | intergenic (+145/+40) | sle1_1/USA300HOU_RS02345 | N‑acetylmuramoyl‑L‑alanine amidase sle1/hypothetical protein |
| ? | USA300TCH1516_ALE | = 492741 | 59 (0.750) | intergenic (+163/+22) | sle1_1/USA300HOU_RS02345 | N‑acetylmuramoyl‑L‑alanine amidase sle1/hypothetical protein | |||||
TTTCACAAGCTGAAAAGTTGGATTGAATCCTAAATTTTATGGCGGGGCTATCAAAGTCGTGATTGTTGTAATAGGAATTTTTGTATATGAAAAAGGATTGGTCGAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/492618‑492723‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aaaaggattggtcgaaCATAGAACATGAAGTTCATTCGACCAATCCTTTTTCATATACAAAAATTCCTATTACAACAATCACGACTTTGATAGCCCCGCCATAAA < USA300TCH1516_ALE/492741‑492653 TTTCACAAGCTGAAAAGTTGGATTGAATCCTAAATTTTATGGCGGGGCTATCAAAGTCGTGATTGTTGTAATAGGAATTTTTGTATATGAA > 1:372299/1‑91 TTCACAAGCTGAAAAGTTGGATTGAATCCTAAATTTTATGGCGGGGCTATCAAAGTCGTGATTGTTGTAATAGGAATTTTTGTATATGAAA < 1:1497444/91‑1 TCACAAGCTGAAAAGTTGGATTGAATCCTAAATTTTATGGCGGGGCTATCAAAGTCGTGATTGTTGTAATAGGAATTTTTGTATATGAAAA < 1:3924362/91‑1 TCACAAGCTGAAAAGTTGGATTGAATCCTAAATTTTATGGCGGGGCTATCAAAGTCGTGATTGTTGTAATAGGAATTTTTGTATATGAAAA < 1:3924427/91‑1 TCACAAGCTGAAAAGTTGGATTGAATCCTAAATTTTATGGCGGGGCTATCAAAGTCGTGATTGTTGTAATAGGAATTTTTGTATATGAAAA > 1:2702200/1‑91 TCACAAGCTGAAAAGTTGGATTGAATCCTAAATTTTATGGCGGGGCTATCAAAGTCGTGATTGTTGTAATAGGAATTTTTGTATATGAAAA > 1:2702099/1‑91 TCACAAGCTGAAAAGTTGGATTGAATCCTAAATTTTATGGCGGGGCTATCAAAGTCGTGATTGTTGTAATAGGAATTTTTGTATATGAAAA > 1:2267549/1‑91 CACAAGCTGAAAAGTTGGATTGAATCCTAAATTTTATGGCGGGGCTATCAAAGTCGTGATTGTTGCAATAGGAATTTTTGTATATGAAAAA > 1:3871979/1‑91 ACAAGCTGAAAAGTTGGATTGAATCCTAAATTTTATGGCGGGGCTATCAAAGTCGTGATTGTTGTAATAGGAATTTTTGTATATGAAAAAG > 1:3625894/1‑91 ACAAGCTGAAAAGTTGGATTGAATCCTAAATTTTATGGCGGGGCTATCAAAGTCGTGATTGTTGTAATAGGAATTTTTGTATATGAAAAAG > 1:3625488/1‑91 ACAAGCTGAAAAGTTGGATTGAATCCTAAATTTTATGGCGGGGCTATCAAAGTCGTGATTGTTGTAATAGGAATTTTTGTATATGAAAAAG > 1:3625487/1‑91 AAGCTGAAAAGTTGGATTGAATCCTAAATTTTATGGCGGGGCTATCAAAGTCGTGATTGTTGTAATAGGAATTTTTGTATATGAAAAAGGA > 1:2629693/1‑91 AGCTGAAAAGTTGGATTGAATCCTAAATTTTATGGCGGGGCTATCAAAGTCGTGATTGTTGTAATAGGAATTTTTGTATATGAAAAAGGAT > 1:2365606/1‑91 AGCTGAAAAGTTGGATTGAATCCTAAATTTTATGGCGGGGCTATCAAAGTCGTGATTGTTGTAATAGGAATTTTTGTATATGAAAAAGGAT > 1:24764/1‑91 AGCTGAAAAGTTGGATTGAATCCTAAATTTTATGGCGGGGCTATCAAAGTCGTGATTGTTGTAATAGGAATTTTTGTATATGAAAAAGGAT < 1:4106798/91‑1 GCTGAAAAGTTGGATTGAATCCTAAATTTTATGGCGGGGCTATCAAAGTCGTGATTGTTGTAATAGGAATTTTTGTATATGAAAAAGGATT > 1:3442699/1‑91 AAAAGTTGGATTGAATCCTAAATTTTATGGCGGGGCTATCAAAGTCGTGATTGTTGTAATAGGAATTTTTGTATATGAAAAAGGATTGGTC < 1:3016137/91‑1 AAAGTTGGATTGAATCCTAAATTTTATGGCGGGACTAGCAAAGTCGCGATTGTTGTAATCGGAATTTTTGTATATGAAAAAGGATTGGTCG > 1:3308523/1‑91 AAGTTGGATTGAATCCTAAATTTTATGGCGGGGCTATCAAAGTCGTGATTGTTGTAATAGGAATTTTTGTATATGAAAAAGGATTGGTCGA < 1:1885482/91‑1 AAGTTGGATTGAATCCTAAATTTTATGGCGGGGCTATCAAAGTCGTGATTGTTGTAATAGGAATTTTTGTATATGAAAAAGGATTGGTCGA < 1:1885711/91‑1 TAAATTTTATGGCGGGGCTATCAAAGTCGTGATTGTTGTAATAGGAATTTTTGTATATGAAAAAGGATTGGTCGAACATAGAACATGAAGT < 1:2915764/91‑1 TAAATTTTATGGCGGGGCTATCAAAGTCGTGATTGTTGTAATAGGAATTTTTGTATATGAAAAAGGATTGGTCGAACATAGAACATGAAGT < 1:2915615/91‑1 ATTTTATGGCGGGGCTATCAAAGTCGTGATTGTTGTAATAGGAATTTTTGTATATGAAAAAGGATTGGTCGAACATAGAACATGAAGTTCA < 1:776146/91‑1 TTTTATGGCGGGGCTATCAAAGTCGTGATTGTTGTAATAGGAATTTTTGTATATGAAAAAGGATTGGTCGAACATAGAACATGAAGTTCAT < 1:422520/91‑1 TTTATGGCGGGGCTATCAAAGTCGTGATTGTTGTAATAGGAATTTTTGTATATGAAAAAGGATTGGTCGAACATAGAACATGAAGTTCATT < 1:1779970/91‑1 TTTATGGCGGGGCTATCAAAGTCGTGATTGTTGTAATAGGAATTTTTGTATATGAAAAAGGATTGGTCGAACATAGAACATGAAGTTCATT < 1:230848/91‑1 TTTATGGCGGGGCTATCAAAGTCGTGATTGTTGTAATAGGAATTTTTGTATATGAAAAAGGATTGGTCGAACATAGAACATGAAGTTCATT < 1:982460/91‑1 TTATGGCGGGGCTATCAAAGTCGTGATTGTTGTAATAGGAATTTTTGTATATGAAAAAGGATTGGTCGAACATAGAACATGAAGTTCATTC < 1:3833604/91‑1 TTATGGCGGGGCTATCAAAGTCGTGATTGTTGTAATAGGAATTTTTGTATATGAAAAAGGATTGGTCGAACATAGAACATGAAGTTCATTC < 1:355689/91‑1 TTATGGCGGGGCTATCAAAGTCGTGATTGTTGTAATAGGAATTTTTGTATATGAAAAAGGATTGGTCGAACATAGAACATGAAGTTCATTC < 1:544034/91‑1 TGGCGGGGCTATCAAAGTCGTGATTGTTGTATTAGGAATTTTTGTATATGAAATAGGTTTGGTCGAAGATAGAACATGAAGTTCATTCGAC < 1:3310862/91‑1 GGCGGGGCTATCAAAGTCGTGATTGTTGTAATAGGAATTTTTGTATATGAAAAAGGATTGGTCGAACATAGAACATGAAGTTCATTCGACC < 1:565827/91‑1 CTATCAAAGTCGTGATTGTTGTAATAGGAATTTTTGTATATGAAAAAGGATTGGTCGAACATAGAACATGAAGTTCATTCGACCAATCCTT < 1:3781951/91‑1 AAAGGATTGGTCGAACATAGAACATGAAGTTCATTCGACCAATCCTTTTTCATATACAAAAATTCCTATTACAACAATCACGACTTTGATA > 1:347988/1‑91 AAGGATTGGTCGAACATAGAACATGAAGTTCATTCGACCAATCCTTTTTCATATACAAAAATTCCTATTACAACAATCACGACTTTGATAG < 1:2593122/91‑1 AGGATTGGTCGAACATAGAACATGAAGTTCATTCGACCAATCCTTTTTCATATACAAAAATTCCTATTACAACAATCACGACTTTGATAGC < 1:1443723/91‑1 AGGATTGGTCGAACATAGAACATGAAGTTCATTCGACCAATCCTTTTTCATATACAAAAATTCCTATTACAACAATCACGACTTTGATAGC > 1:3588898/1‑91 AGGATTGGTCGAACATAGAACATGAAGTTCATTCGACCAATCCTTTTTCATATACAAAAATTCCTATTACAACAATCACGACTTTGATAGC > 1:2884091/1‑91 GGATTGGTCGAACATAGAACATGAAGTTCATTCGACCAATCCTTTTTCATATACAAAAATTCCTATTACAACAATCACGACTTTGATAGCC < 1:1059753/91‑1 GGATTGGTCGAACATAGAACATGAAGTTCATTCGACCAATCCTTTTTCATATACAAAAATTCCTATTACAACAATCACGACTTTGATAGCC > 1:3792666/1‑91 GATTGGTCGAACATAGAACATGAAGTTCATTCGACCAATCCTTTTTCATATACAAAAATTCCTATTACAACAATCACGACTTTGATAGCCC < 1:709878/91‑1 ATTGGTCGAACATAGAACATGAAGTTCATTCGACCAATCCTTTTTCATATACAAAAATTCCTATTACAACAATCACGACTTTGATAGCCCC > 1:493341/1‑91 ATTGGTCGAACATAGAACATGAAGTTCATTCGACCAATCCTTTTTCATATACAAAAATTCCTATTACAACAATCACGACTTTGATAGCCCC > 1:493750/1‑91 ATTGGTCGAACATAGAACATGAAGTTCATTCGACCAATCCCTTTTCATATACAAAAATTCCTATTACAACAATCACGACTTTGATAGCCCC < 1:1462429/91‑1 TTGGTCGAACATAGAACATGAAGTTCATTCGACCAATCCTTTTTCATATACAAAAATTCCTATTACAACAATCACGACTTTGATAGCCCCG < 1:3264071/91‑1 TTGGTCGAACATAGAACATGAAGTTCATTCGACCAATCCTTTTTCATATACAAAAATTCCTATTACAACAATCACGACTTTGATAGCCCCG > 1:3655894/1‑91 GGTCGAACATAGAACATGAAGTTCATTCGACCAATCCTTTTTCATATACAAAAATTCCTATTACAACAATCACGACTTTGATAGCCCCGCC < 1:1906709/91‑1 GGTCGAACATAGAACATGAAGTTCATTCGACCAATCCTTTTTCATATACAAAAATTCCTATTACAACAATCACGACTTTGATAGCCCCGCC > 1:1422693/1‑91 GGTCGAACATAGAACATGAAGTTCATTCGACCAATCCTTTTTCATATACAAAAATTCCTATTACAACAATCACGACTTTGATAGCCCCGCC < 1:1117757/91‑1 GTCGAACATAGAACATGAAGTTCATTCGACCAATCCTTTTTCATATACAAAAATTCCTATTACAACAATCACGACTTTGATAGCCCCGCCA < 1:1343370/91‑1 GTCGAACATAGAACATGAAGTTCATTCGACCAATCCTTTTTCATATACAAAAATTCCTATTACAACAATCACGACTTTGATAGCCCCGCCA < 1:1200938/91‑1 GTCGAACATAGAACATGAAGTTCATTCGACCAATCCTTTTTCATATACAAAAATTCCTATTACAACAATCACGACTTTGATAGCCCCGCCA < 1:933365/91‑1 TCGAACATAGAACATGAAGTTCATTCGACCAATCCTTTTTCATATACAAAAATTCCTATTACAACAATCACGACTTTGATAGCCCCGCCAT < 1:279482/91‑1 TCGAACATAGAACATGAAGTTCATTCGACCAATCCTTTTTCATATACAAAAATTCCTATTACAACAATCACGACTTTGATAGCCCCGCCAT > 1:1974371/1‑91 TCGAACATAGAACATGAAGTTCATTCGACCAATCCTTTTTCATATACAAAAATTCCTATTACAACAATCACGACTTTGATAGCCCCGCCAT > 1:1974283/1‑91 TCGAACATAGAACATGAAGTTCATTCGACCAATCCTTTTTCATATACAAAAATTCCTATTACAACAATCACGACTTTGATAGCCCCGCCAT > 1:1974257/1‑91 AACATAGAACATGAAGTTCATTCGACCAATCCTTTTTCATATACAAAAATTCCTATTACAACAATCACGACTTTGATAGCCCCGCCATAAA < 1:3603980/91‑1 TTTCACAAGCTGAAAAGTTGGATTGAATCCTAAATTTTATGGCGGGGCTATCAAAGTCGTGATTGTTGTAATAGGAATTTTTGTATATGAAAAAGGATTGGTCGAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/492618‑492723‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aaaaggattggtcgaaCATAGAACATGAAGTTCATTCGACCAATCCTTTTTCATATACAAAAATTCCTATTACAACAATCACGACTTTGATAGCCCCGCCATAAA < USA300TCH1516_ALE/492741‑492653 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |