| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP000731 | = 12646 | 80 (0.230) | 13 (0.040) | 8/146 | NT | 15.1% | coding (140/675 nt) | USA300HOU_pUSA300HOUMR0016 | IS257 transposase |
| ? | CP000731 | = 12648 | NA (NA) | coding (142/675 nt) | USA300HOU_pUSA300HOUMR0016 | IS257 transposase | |||||
Only 100 of 206 total aligned reads displayed.
CTGTTGGCTACTATCTAAGATATGCATTGAGTTATCGTGATATATCTGAAATATTAAGGGAACGTGGTGTAAACGTTCATCATTCAACGGTCTACCGTTGGGTTCAAGAATATGCCCCAATTTTATATCAAATTTGGAAGAAAAAGCATAAAAAAGCTTATTACAAATGGCGTATTGATGA > CP000731/12556‑12736 | cTGTTGGCTACTATCTAAGATATGCATTGAGTTATCGTGATATATCTGAAATATTAAGGGAACGTGGTGTAAACGTTCATCATTCAACGGT < 1:2960383‑M1/91‑1 (MQ=255) tGTTGGCTACTATCTAAGATATGCATTGAGTTATCGTGATATATCTGAAATATTAAGGGAACGTGGTGTAAACGTTCATCATTCAACGGTc < 1:933562/91‑1 (MQ=31) tGTTGGCTACTATCTAAGATATGCATTGAGTTATCGTGATATATCTGAAATATTAAGGGAACGTGGTGTAAACGTTCATCATTCAACGGTc < 1:2509192/91‑1 (MQ=31) tGTTGGCTACTATCTAAGATATGCATTGAGTTATCGTGATATATCTGAAATATTAAGGGAACGTGGTGTAAACGTTCATCATTCAACGGTc > 1:908796/1‑91 (MQ=31) tGTTGGCTACTATCTAAGATATGCATTGAGTTATCGTGATATATCTGAAATATTAAGGGAACGTGGTGTAAACGTTCATCATTCAACGGTc < 1:2088716/91‑1 (MQ=31) tGTTGGCTACTATCTAAGATATGCATTGAGTTAGCGTGATATATCTGAAATATTAAGGGGACGTGGTGTAAACGTTCATCATTCAACGGTc < 1:3687637/91‑1 (MQ=9) gTTGGCTACTATCTAAGATATGCATTGAGTTATCGTGATATATCTGAAATATTAAGGGAACGTGGTGTAAACGTTCATCATTCAACGGTag < 1:2715126‑M1/91‑3 (MQ=255) gTTGGCTACTATCTAAGATATGCATTGAGTTATCGTGATATATCTGAAATATTAAGGGAACGTGGTGTAAACGTTCATCATTCAACGGTag < 1:3786857‑M1/91‑3 (MQ=255) gTTGGCTACTATCTAAGATATGCATTGAGTTATCGTGATATATCTGAAATATTAAGGGAACGTGGTGTAAACGTTCATCATTCAACGGTag < 1:3884093‑M1/91‑3 (MQ=255) gTTGGCTACTATCTAAGATATGCATTGAGTTATCGTGATATATCTGAAATATTAAGGGAACGTGGTGTAAACGTTCATCATTCAACGGTag < 1:1674658‑M1/91‑3 (MQ=255) gTTGGCTACTATCTAAGATATGCATTGAGTTATCGTGATATATCTGAAATATTAAGGGAACGTGGTGTAAACGTTCATCATTCAACGGTag < 1:1546137‑M1/91‑3 (MQ=255) gTTGGCTACTATCTAAGATATGCATTGAGTTATCGTGATATATCTGAAATATTAAGGGAACGTGGTGTAAACGTTCATCATTCAACGGTag < 1:1998631‑M1/91‑3 (MQ=255) gTTGGCTACTATCTAAGATATGCATTGAGTTATCGTGATATATCTGAAATATTAAGGGAACGTGGTGTAAACGTTCATCATTCAACGGTag < 1:2009469‑M1/91‑3 (MQ=255) gTTGGCTACTATCTAAGATATGCATTGAGTTATCGTGATATATCTGAAATATTAAGGGAACGTGGTGTAAACGTTCATCATTCAACGGTag < 1:478558‑M1/91‑3 (MQ=255) gTTGGCTACTATCTAAGATATGCATTGAGTTATCGTGATATATCTGAAATATTAAGGGAACGTGGTGTAAACGTTCATCATTCAACGGTag < 1:657161‑M1/91‑3 (MQ=255) gTTGGCTACTATCTAAGATATGCATTGAGTTATCGTGATATATCTGAAATATTAAGGGAACGTGGTGTAAACGTTCATCATTCAACGGTag < 1:2133412‑M1/91‑3 (MQ=255) gTTGGCTACTATCTAAGATATGCATTGAGTTATCGTGATATATCTGAAATATTAAGGGAACGTGGTGTAAACGTTCATCATTCAACGGTag < 1:756982‑M1/91‑3 (MQ=255) ttGGCTACTATCTAAGATATGCATTGAGTTATCGTGATATATCTGAAATATTAAGGGAACGTGGTGTAAACGTTCATCATTCAACGGTaga < 1:1518480‑M1/91‑4 (MQ=255) ttGGCTACTATCTAAGATATGCATTGAGTTATCGTGATATATCTGAAATATTAAGGGAACGTGGTGTAAACGTTCATCATTCAACGGTaga < 1:3254692‑M1/91‑4 (MQ=255) tGGCTACTATCTAAGATATGCATTGAGTTATCGTGATATATCTGAAATATTAAGGGAACGTGGTGTAAACGTTCATCATTCAACGGTagac < 1:3703192‑M1/91‑5 (MQ=255) tGGCTACTATCTAAGATATGCATTGAGTTATCGTGATATATCTGAAATATTAAGGGAACGTGGTGTAAACGTTCATCATTCAACGGTagac < 1:16604‑M1/91‑5 (MQ=255) tGGCTACTATCTAAGATATGCATTGAGTTATCGTGATATATCTGAAATATTAAGGGAACGTGGTGTAAACGTTCATCATTCAACGGTagac < 1:1195324‑M1/91‑5 (MQ=255) tGGCTACTATCTAAGATATGCATTGAGTTATCGTGATATATCTGAAATATTAAGGGAACGTGGTGTAAACGTTCATCATTCAACGGTagac < 1:123972‑M1/91‑5 (MQ=255) tGGCTACTATCTAAGATATGCATTGAGTTATCGTGATATATCTGAAATATTAAGGGAACGTGGTGTAAACGTTCATCATTCAACGGTagac < 1:4110393‑M1/91‑5 (MQ=255) tGGCTACTATCTAAGATATACATTGAGTTATCGTGATATATCTGAAATATTAAGGGAACGTGGTGTAAACGTTCATCATTCAACGGTagac < 1:68799‑M1/91‑5 (MQ=255) tGGCTACTATCTAAGATATACATTGAGTTATCGTGATATATCTGAAATATTAAGGGAACGTGGTGTAAACGTTCATCATTCAACGGTagac < 1:3007311‑M1/91‑5 (MQ=255) tGGCTACTATCTAAGATATACATTGAGTTATCGTGATATATCTGAAATATTAAGGGAACGTGGTGTAAACGTTCATCATTCAACGGTagac < 1:3050026‑M1/91‑5 (MQ=255) tGGCTACTATCTAAGATATACATTGAGTTATCGTGATATATCTGAAATATTAAGGGAACGTGGTGTAAACGTTCATCATTCAACGGTagac < 1:1465667‑M1/91‑5 (MQ=255) ggCTACTATCTAAGATATGCATTGAGTTATCGTGATATATCTGAAATATTAAGGGAACGTGGTGTAAACGTTCATCATTCAACGGTagacc < 1:4049632‑M1/91‑6 (MQ=255) ggCTACTATCTAAGATATGCATTGAGTTATCGTGATATATCTGAAATATTAAGGGAACGTGGTGTAAACGTTCATCATTCAACGGTagacc < 1:2095710‑M1/91‑6 (MQ=255) ggCTACTATCTAAGATATGCATTGAGTTATCGTGATATATCTGAAATATTAAGGGAACGTGGTGTAAACGTTCATCATTCAACGGTagacc < 1:1965490‑M1/91‑6 (MQ=255) ggCTACTATCTAAGATATGCATTGAGTTATCGTGATATATCTGAAATATTAAGGGAACGTGGTGTAAACGTTCATCATTCAACGGTagacc < 1:1912242‑M1/91‑6 (MQ=255) tATCGTGATATATCTGAAATATTAAGGGAACGTGGTGTAAACGTTCATCATTCAACGGTctaccgttgaatgatgaacgtttacaccacgt > 1:924113‑M1/1‑59 (MQ=255) gtggtgTAAACGTTCATCATTCAACGGTctaccgttgaatgatgaacgtttacaccacgttcccttaatatttcagatatatcacgataac > 1:2320017‑M1/1‑28 (MQ=255) tggtgTAAACGTTCATCATTCAACGGTCTACCGTTGGGTTCAAGAATATGCCCCAATTTTATATCAAATTTGGAAGAAAAAGCATaaaaaa > 1:613534/1‑91 (MQ=31) tggtgTAAACGTTCATCATTCAACGGTCTACCGTTGGGTTCAAGAATATGCCCCAATTTTATATCAAATTTGGAAGAAAAAGCATaaaaaa > 1:1733358/1‑91 (MQ=31) tggtgTAAACGTTCATCATTCAACGGTCTACCGTTGGGTTCAAGAATATGCCCCAATTTTATATCAAATTTGGAAGAAAAAGCATaaaaaa > 1:1008833/1‑91 (MQ=31) tggtgTAAACGTTCATCATTCAACGGTCTACCGTTGGGTTCAAGAATATGCCCCAATTTTATATCAAATTTGGAAGAAAAAGCATaaaaaa < 1:947578/91‑1 (MQ=31) ggtgTAAACGTTCATCATTCAACGGTCTACCGTTGGGTTCAAGAATATGCCCCAATTTTATATCAAATTTGGAAGAAAAAGCATAAAAAAg < 1:2458001/91‑1 (MQ=32) ggtgTAAACGTTCATCATTCAACGGTCTACCGTTGGGTTCAAGAATATGCCCCAATTTTATATCAAATTTGGAAGAAAAAGCATAAAAAAg > 1:2470376/1‑91 (MQ=32) ggtgTAAACGTTAATCATTCAACGGTCTACCGTTGGGTTCAAGAATATGCCCCAATTTTATATCAAATTTGGAAGAAAAAGCATAAAAAAg > 1:3171738/1‑91 (MQ=17) tgtAAACGTTCATCATTCAACGGTCTACCGTTGGGTTCAAGAATATGCCCCAATTTTATATCAAATTTGGAAGAAAAAGCATAAAAAAGCt > 1:3479738/1‑91 (MQ=34) tgtAAACGTTCATCATTCAACGGTCTACCGTTGGGTTCAAGAATATGCCCCAATTTTATATCAAATTTGGAAGAAAAAGCATAAAAAAGCt > 1:4084351/1‑91 (MQ=34) tgtAAACGTTCATCATTCAACGGTCTACCGTTGGGTTCAAGAATATGCCCCAATTTTATATCAAATTTGGAAGAAAAAGCATAAAAAAGCt < 1:2901218/91‑1 (MQ=34) gtAAACGTTCATCATTCAACGGTctaccgttgaatgatgaacgtttacaccacgttcccttaatatttcagatatatcacgataactcaat > 1:235510‑M1/1‑23 (MQ=255) tAAACGTTCATCATTCAACGGTCTACCGTTGGGTTCAAGAATATGCCCCAATTTTATCTCAAATTTGGAAGAAAAAGCATAAAAAAGCtta > 1:463912/1‑91 (MQ=21) tAAACGTTCATCATTCAACGGTCTACCGTTGGGTTCAAGAATATGCCCCAATTTTATATCAAATTTGGAAGAAAAAGCATAAAAAAGCtta > 1:1702584/1‑91 (MQ=34) tAAACGTTCATCATTCAACGGTCTACCGTTGGGTTCAAGAATATGCCCCAATTTTATATCAAATTTGGAAGAAAAAGCATAAAAAAGCtta > 1:736779/1‑91 (MQ=34) aaaCGTTCATCATTCAACGGTCTACCGTTGGGTTCAAGAATATGCCCCAATTTTATATCAAATTTGGAAGAAAAAGCATAAAAAAGCttat < 1:113411/91‑1 (MQ=34) aaCGTTCATCATTCAACGGTCTACCGTTGGGTTCAAGAATATGCCCCAATTTTATATCAAATTTGGAAGAAAAAGCATAAAAAAGCttatt < 1:3962725/91‑1 (MQ=34) aCGTTCATCATTCAACGGTCTACCGTTGGGTTCAAGAATATGCCCCAATTTTATATCAAATTTGGAAGAAAAAGCATAAAAAAGCttatta < 1:3039913/91‑1 (MQ=34) gTTCATCATTCAACGGTctaccgttgaatgatgaacgtttacaccacgttcccttaatatttcagatatatcacgataactcaatgcatat > 1:1718970‑M1/1‑17 (MQ=255) gTTCATCATTCAACGGTCTACCGTTGGGTTCAAGAATATGCCCCAATTTTATATCAAATTTGGAAGAAAAAGCATAAAAAAGCTTATTACa > 1:4037780/1‑91 (MQ=34) ttCATCATTCAACGGTCTACCGTTGGGTTCAAGAATATGCCCCAATTTTATATCAAATTTGGAAGAAAAAGCATAAAAAAGCTTATTACaa > 1:2375239/1‑91 (MQ=34) ttCATCATTCAACGGTCTACCGTTGGGTTCAAGAATATGCCCCAATTTTATATCAAATTTGGAAGAAAAAGCATAAAAAAGCTTATTACaa > 1:2706914/1‑91 (MQ=34) ttCATCATTCAACGGTCTACCGTTGGGTTCAAGAATATGCCCCAATTTTATATCAAATTTGGAAGAAAAAGCATAAAAAAGCTTATTACaa > 1:685290/1‑91 (MQ=34) catcatTCAACGGTCTACCGTTGGGTTCAAGAATATGCCCCAATTTTATATCAAATTTGGAAGAAAAAGCATAAAAAAGCTTATTACAAAt > 1:2572164/1‑91 (MQ=33) catcatTCAACGGTCTACCGTTGGGTTCAAGAATATGCCCCAATTTTATATCAAATTTGGAAGAAAAAGCATAAAAAAGCTTATTACAAAt > 1:3511179/1‑91 (MQ=34) atcatTCAACGGTCTACCGTTGGGTTCAAGAATATGCCCCAATTTTATATCAAATTTGGAAGAAAAAGCATAAAAAAGCTTATTACAAATg > 1:1066065/1‑91 (MQ=33) atcatTCAACGGTCTACCGTTGGGTTCAAGAATATGCCCCAATTTTATATCAAATTTGGAAGAAAAAGCATAAAAAAGCTTATTACAAATg > 1:3812096/1‑91 (MQ=34) tcatTCAACGGTCTACCGTTGGGTTCAAGAATATGCCCCAATTTTATATCAAATTTGGAAGAAAAAGCATAAAAAAGCTTATTACAAATgg < 1:2593109/91‑1 (MQ=34) tcatTCAACGGTCTACCGTTGGGTTCAAGAATATGCCCCAATTTTATATCAAATTTGGAAGAAAAAGCATAAAAAAGCTTATTACAAATgg < 1:1140063/91‑1 (MQ=34) tcatTCAACGGTCTACCGTTGGGTTCAAGAATATGCCCCAATTTTATATCAAATTTGGAAGAAAAAGCATAAAAAAGCTTATTACAAATgg < 1:823539/91‑1 (MQ=34) tcatTCAACGGTCTACCGTTGGGTTCAAGAATATGCCCCAATTTTATATCAAATTTGGAAGAAAAAGCATAAAAAAGCTTATTACAAATgg < 1:1112438/91‑1 (MQ=34) tcatTCAACGGTCTACCGTTGGGTTCAAGAATATGCCCCAATTTTATATCAAATTTGGAAGAAAAAGCATAAAAAAGCTTATTACAAATgg < 1:1049338/91‑1 (MQ=34) atTCAACGGTCTACCGTTGGGTTCAAGAATATGCCCCAATTTTATATCAAATTTGGAAGAAAAAGCATAAAAAAGCTTATTACAAATGGCg < 1:1285444/91‑1 (MQ=34) atTCAACGGTCTACCGTTGGGTTCAAGAATATGCCCCAATTTTATATCAAATTTGGAAGAAAAAGCATAAAAAAGCTTATTACAAATGGCg < 1:2329658/91‑1 (MQ=33) cccAACGGTAGACCGTTGGGTTCAAGAATATGCCCCAATTTTATATCAAATTTGGAAGAAAAAGCATAAAAAAGCTTATTACAAATGGCGt > 1:134062/3‑91 (MQ=11) tCAACGGTCTACCGTTGGGTTCAAGAATATGCCCCAATTTTATATCAAATTTGGAAGAAAAAGCATAAAAATGCTTATTACAAATGGCGTa < 1:1869922/91‑1 (MQ=18) tCAACGGTCTACCGTTGGGTTCAAGAATATGCCCCAATTTTATATCAAATTTGGAAGAAAAAGCATAAAAAAGCTTATTACAAATGGCGTa > 1:406542/1‑91 (MQ=34) cAACGGTagaccgttgaatgatgaacgtttacaccacgttcccttaatatttcagatatatcacgataactcaatgcatatcttagatagt > 1:3105132‑M1/1‑7 (MQ=255) aaCGGTctaccgttgaatgatgaacgtttacaccacgttcccttaatatttcagatatatcacgataactcaatgcatatcttagatagaa > 1:3092279‑M1/1‑6 (MQ=255) aaCGGTagaccgttgaatgatgaacgtttacaccacgatcccttaagatttcagatataccacgataactcaatgcatatcttagatagta > 1:3315185‑M1/1‑6 (MQ=255) aaCGGTCTACCGTTGGGTTCAAGAATATGCCCCAATTTTATATCAAATTTGGAAGAAAAAGCATAAAAAAGCTTATTACAAATGGCGTAtt < 1:1381082/91‑1 (MQ=34) aCGGTagaccgttgaatgatgaacgtttacaccacgttcccttaatatttcagatatatcacgataactcaatgcatatcttagatagtag < 1:3017334‑M1/91‑87 (MQ=255) aCGGTagaccgttgaatgatgaacgtttacaccacgttcccttaatatttcagatatatcacgataactcaatgcatatcttagatagtag > 1:3901932‑M1/1‑5 (MQ=255) aCGGTagaccgttgaatgatgaacgtttacaccacgttcccttaatatttcagatatatcacgataactcaatgcatatcttagatagtag > 1:2689619‑M1/1‑5 (MQ=255) aCGGTagaccgttgaatgatgaacgtttacaccacgttcccttaatatttcagatatatcacgataactcaatgcatatcttagatagtag > 1:3224529‑M1/1‑5 (MQ=255) aCGGTagaccgttgaatgatgaacgtttacaccacgttcccttaatatttcagatatatcacgataactcaatgcatatcttagatagtag > 1:2648074‑M1/1‑5 (MQ=255) aCGGTagaccgttgaatgatgaacgtttacaccacgttcccttaatatttcagatatatcacgataactcaatgcatatcttagatagtag < 1:423833‑M1/91‑87 (MQ=255) aCGGTagaccgttgaatgatgaacgtttacaccacgttcccttaatatttcagatatatcacgataactcaatgcatatcttagatagtag > 1:3631277‑M1/1‑5 (MQ=255) aCGGTCTACCGTTGGGTTCAAGAATATGCCCCTATTTTATATCAAATTTGGAAGAAAAAGCATAAAAAAGCTTATTACAAATGGCGTATtg < 1:3543397/91‑1 (MQ=21) aCGGTCTACCGTTGGGTTCAAGAATATGCCCCAATTTTATATCAAATTTGGAAGAAAAAGCATAAAAAAGCTTATTACAAATGGCGTATtg > 1:873715/1‑91 (MQ=34) cGGTagaccgttgaatgatgaacgtttacaccacgttcccttaatatttcagatatatcacgataactcaatgcatatcttagatagtagc < 1:1041248‑M1/91‑88 (MQ=255) cGGTagaccgttgaatgatgaacgtgtacaccacgttcccttaatatttcagagatatcacgataactcaatgcatatcttagatagtagc < 1:3865569‑M1/91‑88 (MQ=255) cGGTCTACCGTTGGGTTCAAGAATATGCCCCAATTTTATATCAAATTTGGAAGAAAAAGCATAAAAAAGCTTATTACAAATGGCGTATtga < 1:152769/91‑1 (MQ=33) cGGTCTACCGTTGGGTTCAAGAATATGCCCCAATTTTATATCAAATTTGGAAGAAAAAGCATAAAAAAGCTTATTACAAATGGCGTATtga < 1:798559/91‑1 (MQ=33) ggTagaccgttgaatgatgaacgtttacaccacgttcccttaatatttcagatatatcacgataactcaatgcatatcttagatagtagcc < 1:585081‑M1/91‑89 (MQ=255) ggTagaccgttgaatgatgaacgtttacaccacgttcccttaatatttcagatatatcacgataactcaatgcatatcttagatagtagcc > 1:1418401‑M1/1‑3 (MQ=255) ggTagaccgttgaatgatgaacgtttacaccacgttcccttaatatttcagatatatcacgataactcaatgcatatcttagatagtagcc < 1:1580192‑M1/91‑89 (MQ=255) ggTagaccgttgaatgatgaacgtttacaccacgttcccttaatatttcagatatatcacgataactcaatgcatatcttagatagtagcc < 1:2362751‑M1/91‑89 (MQ=255) ggTagaccgttgaatgatgaacgtttacaccacgttcccttaatatttcagatatatcacgataactcaatgcatatcttagatagtagcc < 1:2511167‑M1/91‑89 (MQ=255) ggTCTACCGTTGGGTTCAAGAATATGCCCCAATTTTATATCAAATTTGGAAGAAAAAGCATAAAAAAGCTTATTACAAATGGCGTATtgat < 1:425203/91‑1 (MQ=32) ggTCTACCGTTGGGTTCAAGAATATGCCCCAATTTTATATCAAATTTGGAAGAAAAAGCATAAAAAAGCTTATTACAAATGGCGTATtgat < 1:1640794/91‑1 (MQ=32) gTagaccgttgaatgatgaacgtttacaccacgttcccttaatatttcagatatatcacgataactcaatgcatatcttagatagtagcca < 1:495701‑M1/91‑90 (MQ=255) gTagaccgttgaatgatgaacgtttacaccacgttcccttaatatttcagatatatcacgataactcaatgcatatcttagatagtagcca < 1:2048158‑M1/91‑90 (MQ=255) gTagaccgttgaatgatgaacgtttacaccacgttcccttaatatttcagatatatcacgataactcaatgcatatcttagatagtagcca < 1:2554369‑M1/91‑90 (MQ=255) gTCTACCGTTGGGTTCAAGAATATGCCCCAATTTTATATCAAATTTGGAAGAAAAAGCATAAAAAAGCTTATTACAAATGGCGTATtgatg > 1:626552/1‑91 (MQ=31) tagaccgttgaatgatgaacgtttacaccacgttcccttaatatttcagatatatcacgataactcaatgcatatcttagatagtagccaa > 1:1602097‑M1/1‑1 (MQ=255) tagaccgttgaatgatgaacgtttacaccacgttcccttaatatttcagatatatcacgataactcaatgcatatcttagatagtagccaa > 1:3101067‑M1/1‑1 (MQ=255) | CTGTTGGCTACTATCTAAGATATGCATTGAGTTATCGTGATATATCTGAAATATTAAGGGAACGTGGTGTAAACGTTCATCATTCAACGGTCTACCGTTGGGTTCAAGAATATGCCCCAATTTTATATCAAATTTGGAAGAAAAAGCATAAAAAAGCTTATTACAAATGGCGTATTGATGA > CP000731/12556‑12736 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |