New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? USA300TCH1516_ALE 365029 =68 (0.690)22 (0.260) 6/136 NT 26.9% intergenic (+39/+66) nupC_1/sglT Nucleoside permease NupC/Sodium/glucose cotransporter
?USA300TCH1516_ALE 365083 = 62 (0.740)intergenic (+93/+12) nupC_1/sglT Nucleoside permease NupC/Sodium/glucose cotransporter

Only 100 of 147 total aligned reads displayed.

TCAACTCTAGCTTCAATCATTTCAGGATCAATCATTGGCTTAGTATTGTAAATGAATCGAAGTACCTAAATTAAATTCATGGCAAAGCTAAACCCCGTCACCAAGTTGGCGCAACAGCGCATCATAACTTAGTGACGGGGTTTTATCATAACAATCTACTTTTTCGTAGCCGTTTTT  >  USA300TCH1516_ALE/364940‑365116
                                                                                         |                                                                                       
tCAACTCTAGCTTCAATCATTTCAGGATCAATCATTGGCTTAGTATTGTAAATGAATCGAAGTACCTAAATTAAATTCATGGCAAAGCTAA                                                                                        >  1:2323611‑M1/1‑91 (MQ=255)
aagatataacgggattaacaatttttgaaaaagataaaccatcaacatacatttcaaaaacggctacgaaaaagtagattgttatgctaaa                                                                                        <  1:3451544‑M1/2‑1 (MQ=255)
aagatataacgggattaacaatttttgaaaaagataaaccatcaacatacatttcaaaaacggctacgaaaaagtagattgttatgataaa                                                                                        <  1:1099154‑M1/2‑1 (MQ=255)
aagatataacgggattaacaatttttgaaaaagataaaccatcaacatacatttcaaaaacggctacgaaaaagtagattgttatgataaa                                                                                        <  1:435294‑M1/2‑1 (MQ=255)
aagatataacgggattaacaatttttgaaaaagataaaccatcaacatacatttcaaaaacggctacgaaaaagtagattgttatgataaa                                                                                        >  1:3078557‑M1/90‑91 (MQ=255)
  aaCTCTAGCTTCAATCATTTCAGGATCAATCATTGGCTTAGTATTGTAAATGAATCGAAGTACCTAAATTAAATTCATGGCAAAGCTAAAC                                                                                      <  1:3910311‑M1/91‑1 (MQ=255)
   atataacgggattaacaatttttgaaaaagataaaccatcaacatacatttcaaaaacggctacgaaaaagtagattgttatgataAAAcc                                                                                     <  1:3100640‑M1/5‑1 (MQ=255)
   atataacgggattaacaatttttgaaaaagataaaccatcaacatacatttcaaaaacggctacgaaaaagtagattgttatgataAAAcc                                                                                     <  1:3100440‑M1/5‑1 (MQ=255)
    ctctAGCTTCAATCATTTCAGGATCAATCATTGGCTTAGTATTGTAAATGAATCGAAGTACCTAAATTAAATTCATGGCAAAGCTAAACCC                                                                                    >  1:1037021‑M1/1‑91 (MQ=255)
     ataacgggattaacaatttttgaaaaagataaaccatcaacatacatttcaaaaacggctacgaaaaagtagattgttatgataAAAcccc                                                                                   <  1:4125087‑M1/7‑1 (MQ=255)
     ataacgggattaacaatttttgaaaaagataaaccatcaacatacatttcaaaaacggctacgaaaaagtagattgttatgataAAAcccc                                                                                   <  1:326985‑M1/7‑1 (MQ=255)
      taacgggattaacaatttttgaaaaagataaaccatcaacatacatttcaaaaacggctacgaaaaagtagattgttatgataAAACCCCg                                                                                  <  1:1917305‑M1/8‑1 (MQ=255)
      taacgggattaacaatttttgaaaaagataaaccatcaacatacatttcaaaaacggctacgaaaaagtagattgttatgataAAACCCCg                                                                                  <  1:1178739‑M1/8‑1 (MQ=255)
      taacgggattaacaatttttgaaaaagataaaccatcaacatacatttcaaaaacggctacgaaaaagtagattgttatgataAAACCCCg                                                                                  <  1:1178208‑M1/8‑1 (MQ=255)
      ctAGCTTCAATCATTTCAGGATCAATCATTGGCTTAGTATTGTAAATGAATCGAAGTACCTAAATTAAATTCATGGCAAAGCTAAACCCCG                                                                                  >  1:3514877‑M1/1‑91 (MQ=255)
       aacgggattaacaatttttgaaaaagataaaccatcaacatacatttcaaaaacggctacgaaaaagtagattgttatgataAAACCCCGt                                                                                 >  1:2637080‑M1/83‑91 (MQ=255)
        acgggattaacaatttttgaaaaagataaaccatcaacatacatttcaaaaacggctacgaaaaagtagattgttatgataAAACCCCGTc                                                                                <  1:2889148‑M1/10‑1 (MQ=255)
        acgggattaacaatttttgaaaaagataaaccatcaacatacatttcaaaaacggctacgaaaaagtagaatgttatgataAAACCCCGTc                                                                                <  1:2889018‑M1/10‑1 (MQ=255)
         cgggattaacaatttttgaaaaagataaaccatcaacatacatttcaaaaacggctacgaaaaagtagattgttatgataAAACCCCGTCa                                                                               >  1:1004729‑M1/81‑91 (MQ=255)
          gggattaacaatttttgaaaaagataaaccatcaacatacatttcaaaaacggctacgaaaaagtagattgttatgataAAACCCCGTCAc                                                                              >  1:3439134‑M1/80‑91 (MQ=255)
          gggattaacaatttttgaaaaagataaaccatcaacatacatttcaaaaacggctacgaaaaagtagattgttatgataAAACCCCGTCAc                                                                              >  1:1582368‑M1/80‑91 (MQ=255)
          gggattaacaatttttgaaaaagataaaccatcaacatacatttcaaaaacggctacgaaaaagtagattgttatgataAAACCCCGTCAc                                                                              >  1:3645897‑M1/80‑91 (MQ=255)
            tCAATCATTTCAGGATCAATCATTGGCTTAGTATTGTAAATGAATCGAAGTACCTAAATTAAATTCATGGCAAAGCTAAACCCCGTCACCa                                                                            <  1:2920800/91‑1 (MQ=255)
             cAATCATTTCAGGATCAATCATTGGCTTAGTATTGTAAATGAATCGAAGTACCTAAATTAAATTCATGGCAAAGCTAAACCCCGTCACCaa                                                                           >  1:3727089/1‑91 (MQ=255)
               aTCATTTCAGGATCAATCATTGGCTTAGTATTGTAAATGAATCGAAGTACCTAAATTAAATTCATGGCAAAGCTAAACCCCGTCACCAAGt                                                                         >  1:688203/1‑91 (MQ=255)
                tCATTTCAGGATCAATCATTGGCTTAGTATTGTAAATGAATCGAAGTACCTAAATTAAATTCATGGCAAAGCTAAACCCCGTCACCAAGtt                                                                        >  1:1075718/1‑91 (MQ=255)
                   tttCAGGATCAATCATTGGCTTAGTATTGTAAATGAATCGAAGTACCTAAATTAAATTCATGGCAAAGCTAAACCCCGTCACCAAGTTGgc                                                                     <  1:3667496/91‑1 (MQ=255)
                   tttCAGGATCAATCATTGGCTTAGTATTGTAAATGAATCGAAGTACCTAAATTAAATTCATGGCAAAGCTAAACCCCGTCACCAAGTTGgc                                                                     >  1:382096/1‑91 (MQ=255)
                    ttCAGGATCAATCATTGGCTTAGTATTGTAAATGAATCGAAGTACCTAAATTAAATTCATGGCAAAGCTAAACCCCGTCACCAAGTTGgcg                                                                    <  1:2479445/91‑1 (MQ=255)
                    ttCAGGATCAATCATTGGCTTAGTATTGTAAATGAATCGAAGTACCTAAATTAAATTCATGGCAAAGCTAAACCCCGTCACCAAGTTGgcg                                                                    <  1:4016772/91‑1 (MQ=255)
                    ttCAGGATCAATCATTGGCTTAGTATTGTAAATGAATCGAAGTACCTAAATTAAATTCATGGCAAAGCTAAACCCCGTCACCAAGTTGgcg                                                                    >  1:1508841/1‑91 (MQ=255)
                     tCAGGATCAATCATTGGCTTAGTATTGTAAATGAATCGAAGTACCTAAATTAAATTCATGGCAAAGCTAAACCCCGTCACCAAGTTGgcgc                                                                   >  1:2731333/1‑91 (MQ=255)
                           tcaatcaTTGGCTTAGTATTGTAAATGAATCGAAGTACCTAAATTAAATTCATGGCAAAGCTAAACCCCGTCACCAAGTTGGCGCAACAgc                                                             >  1:2194371/1‑91 (MQ=255)
                            caatcaTTGGCTTAGTATTGTAAATGAATCGAAGTACCTAAATTAAATTCATGGCAAAGCTAAACCCCGTCACCAAGTTGGCGCAACAgcg                                                            <  1:2182920/91‑1 (MQ=255)
                            caatcaTTGGCTTAGTATTGTAAATGAATCGAAGTACCTAAATTAAATTCATGGCAAAGCTAAACCCCGTCACCAAGTTGGCGCAACAgcg                                                            >  1:3240881/1‑91 (MQ=255)
                                    aaccatcaacatacatttcaaaaacggctacgaaaaagtagattgttatgataAAACCCCGTCACCAAGTTGGCGCAACAGCGCATCATaa                                                    >  1:2765905‑M1/54‑91 (MQ=255)
                                    aaccatcaacatacatttcaaaaacggctacgaaaaagtagattgttatgataAAACCCCGTCACCAAGTTGGCGCAACAGCGCATCATaa                                                    >  1:782960‑M1/54‑91 (MQ=255)
                                     gCTTAGTATTGTAAATGAATCGAAGTACCTAAATTAAATTCATGGCAAAGCTAAACCCCGTCACtaagttatgatgcgctgttgcgccaac                                                   <  1:1273823‑M1/91‑28 (MQ=255)
                                     gCTTAGTATTGTAAATGAATCGAAGTACCTAAATTAAATTCATGGCAAAGCTAAACCCCGTCACCAAGTTGGCGCAACAGCGCATCATAAc                                                   <  1:2687511/91‑1 (MQ=255)
                                     accatcaacatacatttcaaaaacggctacgaaaaagtagattgttatgataAAACCCCGTCACCAAGTTGGCGCAACAGCGCATCATAAc                                                   >  1:642513‑M1/53‑91 (MQ=255)
                                     accatcaacatacatttcaaaaacggctacgaaaaagtagattgttatgataAAACCCCGTCACCAAGTTGGCGCAACAGCGCATCATAAc                                                   >  1:693215‑M1/53‑91 (MQ=255)
                                     accatcaacatacatttcaaaaacggctacgaaaaagtagattgttatgataAAACCCCGTCACCAAGTTGGCGCAACAGCGCATCATAAc                                                   >  1:2829709‑M1/53‑91 (MQ=255)
                                      ccatcaacatacatttcaaaaacggctacgaaaaagtagattgttatgataAAACCCCGTCACCAAGTTGGCGCAACAGCGCATCATAACt                                                  >  1:2706781‑M1/52‑91 (MQ=255)
                                      ccatcaacatacatttcaaaaacggctacgaaaaagtagattgttatgataAAACCCCGTCACCAAGTTGGCGCAACAGCGCATCATAACt                                                  >  1:136882‑M1/52‑91 (MQ=255)
                                      ccatcaacatacatttcaaaaacggctacgaaaaagtagattgttatgataAAACCCCGTCACCAAGTTGGCGCAACAGCGCATCATAACt                                                  >  1:2915782‑M1/52‑91 (MQ=255)
                                      ccatcaacatacatttcaaaaacggctacgaaaaagtagattgttatgataAAACCCCGTCACCAAGTTGGCGCAACAGCGCATCATAACt                                                  >  1:131912‑M1/52‑91 (MQ=255)
                                      ccatcaacatacatttcaaaaacggctacgaaaaagtagattgttatgataAAACCCCGTCACCAAGTTGGCGCAACAGCGCATCATAACt                                                  >  1:4144761‑M1/52‑91 (MQ=255)
                                      ccatcaacatacatttcaaaaacggctacgaaaaagtagattgttatgataAAACCCCGTCACCAAGTTGGCGCAACAGCGCATCATAACt                                                  >  1:3952057‑M1/52‑91 (MQ=255)
                                      cTTAGTATTGTAAATGAATCGAAGTACCTAAATTAAATTCATGGCAAAGCTAAACCCCGTCACtaagttatgatgcgctgttgcgccaact                                                  <  1:969295‑M1/91‑29 (MQ=255)
                                       ttAGTATTGTAAATGAATCGAAGTACCTAAATTAAATTCATGGCAAAGCTAAACCCCGTCACtaagttatgatgcgctgttgcgccaactt                                                 <  1:1007346‑M1/91‑30 (MQ=255)
                                       ttAGTATTGTAAATGAATCGAAGTACCTAAATTAAATTCATGGCAAAGCTAAACCCCGTCACCAAGTTGGCGCAACAGCGCATCATAACtt                                                 >  1:522618/1‑91 (MQ=255)
                                       catcaacatacatttcaaaaacggctacgaaaaagtagattgttatgataAAACCCCGTCACCAAGTTGGCGCAACAGCGCATCATAACtt                                                 >  1:2158069‑M1/51‑91 (MQ=255)
                                       catcaacatacatttcaaaaacggctacgaaaaagtagattgttatgataAAACCCCGTCACCAAGTTGGCGCAACAGCGCATCATAACtt                                                 >  1:2159099‑M1/51‑91 (MQ=255)
                                         aGTATTGTAAATGAATCGAAGTACCTAAATTAAATTCATGGCAAAGCTAAACCCCGTCACtaagttatgatgcgctgttgcgccaacttgg                                               <  1:351768‑M1/91‑32 (MQ=255)
                                         aGTATTGTAAATGAATCGAAGTACCTAAATTAAATTCATGGCAAAGCTAAACCCCGTCACCAAGTTGGCGCAACAGCGCATCATAACTTAg                                               <  1:848782‑M2/91‑2 (MQ=255)
                                            aTTGTAAATGAATCGAAGTACCTAAATTAAATTCATGGCAAAGCTAAACCCCGTCACtaagttatgatgcgctgttgcgccaacttggtga                                            <  1:1691058‑M1/91‑35 (MQ=255)
                                            aTTGTAAATGAATCGAAGTACCTAAATTAAATTCATGGCAAAGCTAAACCCCGTCACCAAGTTGGCGCAACAGCGCATCATAACTTAgtga                                            >  1:2710615‑M2/1‑87 (MQ=255)
                                            aTTGTAAATGAATCGAAGTACCTAAATTAAATTCATGGCAAAGCTAAACCCCGTCACCAAGTTGGCGCAACAGCGCATCATAACTTAgtga                                            >  1:357489‑M2/1‑87 (MQ=255)
                                             ttGTAAATGAATCGAAGTACCTAAATTAAATTCATGGCAAAGCTAAACCCCGTCACCAAGTTGGCGCAACAGCGCATCATAACTTAgtgac                                           >  1:1483430‑M2/1‑86 (MQ=255)
                                              tGTAAATGAATCGAAGTACCTAAATTAAATTCATGGCAAAGCTAAACCCCGTCACCAAGTTGGCGCAACAGCGCATCATAACTTAgtgacg                                          <  1:1454329‑M2/91‑7 (MQ=255)
                                               gTAAATGAATCGAAGTACCTAAATTAAATTCATGGCAAAGCTAAACCCCGTCACCAAGTTGGCGCAACAGCGCATCATAACTTCgtgacgg                                         <  1:2075328‑M2/91‑8 (MQ=255)
                                               gTAAATGAATCGAAGTACCTAAATTAAATTCATGGCAAAGCTAAACCCCGTCACCAAGTTGGCGCAACAGCGCATCATAACTTCgtgacgg                                         <  1:2075188‑M2/91‑8 (MQ=255)
                                               gTAAATGAATCGAAGTACCTAAATTAAATTCATGGCAAAGCTAAACCCCGTCACCAAGTTGGCGCAACAGCGCATCATAACTTAgtgacgg                                         >  1:3046926‑M2/1‑84 (MQ=255)
                                                  aaTGAATCGAAGTACCTAAATTAAATTCATGGCAAAGCTAAACCCCGTCACCAAGTTGGCGCAACAGCGCATCATAACTTAgtgacggggt                                      <  1:1920136‑M2/91‑11 (MQ=255)
                                                     gAATCGAAGTACCTAAATTAAATTCATGGCAAAGCTAAACCCCGTCACCAAGTTGGCGCAACAGCGCATCATAACTTAGTGACGGGGtttt                                   <  1:2345494/91‑1 (MQ=255)
                                                      aaTCGAAGTACCTAAATTAAATTCATGGCAAAGCTAAACCCCGTCACCAAGTTGGCGCAACAGCGCATCATAACTTAGTGACGGGGTTTTa                                  >  1:3231727/1‑91 (MQ=255)
                                                      aaTCGAAGTACCTAAATTAAATTCATGGCAAAGCTAAACCCCGTCACCAAGTTGGCGCAACAGCGCATCATAACTTAGTGACGGGGTTTTa                                  >  1:262207/1‑91 (MQ=255)
                                                      aaTCGAAGTACCGAAATTAAATTCATGGCAAAGCTAAACCCCGTCACCAAGTTGGCGCAACAGCGCATCATAACTTAGTGACGGGGTTTTa                                  >  1:3187246/1‑91 (MQ=255)
                                                       aTCGAAGTACCTAAATTAAATTCATGGCAAAGCTAAACCCCGTCACCAAGTTGGCGCAACAGCGCATCATAACTTAgtgacggggtttagc                                 <  1:2692327‑M2/91‑16 (MQ=255)
                                                        tCGAAGTACCTAAATTAAATTCATGGCAAAGCTAAACCCCGTCACCAAGTTGGCGCAACAGCGCATCATAACTTAGTGACGGGGTTTTATc                                >  1:1255471/1‑91 (MQ=255)
                                                        tCGAAGTACCTAAATTAAATTCATGGCAAAGCTAAACCCCGTCACCAAGTTGGCGCAACAGCGCATCATAACTTAGTGACGGGGTTTTATc                                >  1:831723/1‑91 (MQ=255)
                                                        tCGAAGTACCTAAATTAAATTCATGGCAAAGCTAAACCCCGTCACCAAGTTGGCGCAACAGCGCATCATAACTTAGTGACGGGGTTTTATc                                <  1:353803/91‑1 (MQ=255)
                                                        tCGAAGTACCTAAATTAAATTCATGGCAAAGCTAAACCCCGTCACCAAGTTGGCGCAACAGCGCATCATAACTTAGTGACGGGGTTTTATc                                >  1:1255326/1‑91 (MQ=255)
                                                        tCGAAGTACCTAAATTAAATTCATGGCAAAGCTAAACCCCGTCACCAAGTTGGCGCAACAGCGCATCATAACTTAGTGACGGGGTTTTATc                                <  1:2910145/91‑1 (MQ=255)
                                                        tCGAAGTACCTAAATTAAATTCATGGCAAAGCTAAACCCCGTCACCAAGTTGGCGCAACAGCGCATCATAACTTAGTGACGGGGTTTTATc                                <  1:2597416/91‑1 (MQ=255)
                                                        aaaacggctacgaaaaagtagattgttatgataAAACCCCGTCACCAAGTTGGCGCAACAGCGCATCATAACTTAGTGACGGGGTTTTATc                                >  1:2756256‑M1/34‑91 (MQ=255)
                                                         cGAAGTACCTAAATTAAATTCATGGCAAAGCTAAACCCCGTCACCAAGTTGGCGCAACAGCGCATCATAACTTAGTGACGGGGTTTTATCa                               >  1:3897722/1‑91 (MQ=255)
                                                          gAAGTACCTAAATTAAATTCATGGCAAAGCTAAACCCCGTCACCAAGTTGGCGCAACAGCGCATCATAACTTAGTGACGGGGTTTTATCAt                              <  1:844110/91‑1 (MQ=255)
                                                          gAAGTACCTAAATTAAATTCATGGCAAAGCTAAACCCCGTCACCAAGTTGGCGCAACAGCGCATCATAACTTAGTGACGGGGTTTTATCAt                              <  1:675142/91‑1 (MQ=255)
                                                           aaGTACCTAAATTAAATTCATGGCAAAGCTAAACCCCGTCACCAAGTTGGCGCAACAGCGCATCATAACTTAGTGACGGGGTTTTATCATa                             >  1:713744/1‑91 (MQ=255)
                                                                    aattaaattCATGGCAAAGCTAAACCCCGTCACCAAGTTGGCGCAACAGCGCATCATAACTTAGTGACGGGGTTTTATCATAACAATCTAc                    <  1:2230539/91‑1 (MQ=255)
                                                                    aattaaattCATGGCAAAGCTAAACCCCGTCACCAAGTTGGCGCAACAGCGCATCATAACTTAGTGACGGGGTTTTATCATAACAATCTAc                    >  1:2193831/1‑91 (MQ=255)
                                                                    aattaaattCATGGCAAAGCTAAACCCCGTCACCAAGTTGGCGCAACAGCGCATCATAACTTAGTGACGGGGTTTTATCATAACAATCTAc                    <  1:164951/91‑1 (MQ=255)
                                                                    aattaaattCATGGCAAAGCTAAACCCCGTCACCAAGTTGGCGCAACAGCGCATCATAACTTAGTGACGGGGTTTTATCATAACAATCTAc                    >  1:1617183/1‑91 (MQ=255)
                                                                       taaattCATGGCAAAGCTAAACCCCGTCACCAAGTTGGCGCAACAGCGCATCATAACTTAGTGACGGGGTTTTATCATAACAATCTACttt                 <  1:2742522/91‑1 (MQ=255)
                                                                        aaattCATGGCAAAGCTAAACCCCGTCACCAAGTTGGCGCAACAGCGCATCATAACTTAGTGACGGGGTTTTATCATAACAATCTACtttt                >  1:706101/1‑91 (MQ=255)
                                                                           ttCATGGCAAAGCTAAACCCCGTCACCAAGTTGGCGCAACAGCGCATCATAACTTAGTGACGGGGTTTTATCATAACAATCTACTTTTTCg             >  1:2467954/1‑91 (MQ=255)
                                                                           ttCATGGCAAAGCTAAACCCCGTCACCAAGTTGGCGCAACAGCGCATCATAACTTAGTGACGGGGTTTTATCATAACAATCTACTTTTTCg             <  1:2367770/91‑1 (MQ=255)
                                                                             cATGGCAAAGCTAAACCCCGTCACCAAGTTGGCGCAACAGCGCATCATAACTTAGTGACGGGGTTTTATCATAACAATCTACTTTTTCGTa           <  1:3108360/91‑1 (MQ=255)
                                                                              aTGGCAAAGCTAAACCCCGTCACCAAGTTGGCGCAACAGCGCATCATAACTTAGTGACGGGGTTTTATCATAACAATCTACTTTTTCGTAg          >  1:1426633/1‑91 (MQ=255)
                                                                               tGGCAAAGCTAAACCCCGTCACCAAGTTGGCGCAACAGCGCATCATAACTTAGTGACGGGGTTTTATCATAACAATCTACTTTTTCGTAGc         >  1:2920421/1‑91 (MQ=255)
                                                                               tGGCAAAGCTAAACCCCGTCACCAAGTTGGCGCAACAGCGCATCATAACTTAGTGACGGGGTTTTATCATAACAATCTACTTTTTCGTAGc         >  1:1743108/1‑91 (MQ=255)
                                                                                ggCAATGCTAAACCCCGTCACCAAGTTGGCGCAACAGCGCATCATAACTTAGTGACGGGGTTTTATCATAACAATCTACTTTTTCGTAGcc        <  1:268999/91‑1 (MQ=255)
                                                                                ggCAAAGCTAAACCCCGTCACCAAGTTGGCGCAACAGCGCATCATAACTTAGTGACGGGGTTTTATCATAACAATCTACTTTTTCGTAGcc        <  1:1507377/91‑1 (MQ=255)
                                                                                 gCAAAGCTAAACCCCGTCACCAAGTTGGCGCAACAGCGCATCATAACTTAGTGACGGGGTTTTATCATAACAATCTACTTTTTCGTAGCCg       <  1:1746147/91‑1 (MQ=255)
                                                                                 gCAAAGCTAAACCCCGTCACCAAGTTGGCGCAACAGCGCATCATAACTTAGTGACGGGGTTTTATCATAACAATCTACTTTTTCGTAGCCg       <  1:1746185/91‑1 (MQ=255)
                                                                                  tatgataAAACCCCGTCACCAAGTTGGCGCAACAGCGCATCATAACTTAGTGACGGGGTTTTATCATAACAATCTACTTTTTCGTAGCCGt      >  1:456486‑M1/8‑91 (MQ=255)
                                                                                   aaaGCTAAACCCCGTCACCAAGTTGGCGCAACAGCGCATCATAACTTAGTGACGGGGTTTTATCATAACAATCTACTTTTTCGTAGCCGtt     >  1:2614754/1‑91 (MQ=255)
                                                                                   aaaGCTAAACCCCGTCACCAAGTTGGCGCAACAGCGCATCATAACTTAGTGACGGGGTTTTATCATAACAATCTACTTTTTCGTAGCCGtt     >  1:944282/1‑91 (MQ=255)
                                                                                      gCTAAACCCCGTCACtaagttatgatgcgctgttgcgccaacttggtgacggggtttagctttgccatgaatttaatttaggtacttcgat  <  1:2692327‑M1/91‑77 (MQ=255)
                                                                                         |                                                                                       
TCAACTCTAGCTTCAATCATTTCAGGATCAATCATTGGCTTAGTATTGTAAATGAATCGAAGTACCTAAATTAAATTCATGGCAAAGCTAAACCCCGTCACCAAGTTGGCGCAACAGCGCATCATAACTTAGTGACGGGGTTTTATCATAACAATCTACTTTTTCGTAGCCGTTTTT  >  USA300TCH1516_ALE/364940‑365116

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.