BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	= 1355723	90 (0.920)	6 (0.070)	5/138	NT	7.3%	intergenic (+13/+41)	USA300HOU_RS06740/yclM	hypothetical protein/Aspartokinase 3
*	?	USA300TCH1516_ALE	= 1355749	74 (0.870)	6 (0.070)	5/138	NT	7.3%	intergenic (+39/+15)	USA300HOU_RS06740/yclM	hypothetical protein/Aspartokinase 3

Only 100 of 131 total aligned reads displayed.

AGTAGGTGAGCAACGTATTAAGGATGCAATCCAGAGAACAATAAATAATTAAGAAAAAGCAATTCATAACGCAGTTGAATACATGTGTTACGAATTGCTTTTATATTAGTTTTTATCACACAAGTTTTTTAATGCAACCCCGTGATAGCAAAACTCATATGTAGATAATACAGCTTTTTC  >  USA300TCH1516_ALE/1355659‑1355838

gagttttgctatcacggggttgcattaaaaaacttgtgtgataaaaactaatatAAAAGCAATTCATAACGCAGTTGAATACATGTGTTAc                                                                                           >  1:1578713‑M1/55‑91 (MQ=255)

 agttttgctatcacggggttgcattaaaaaacttgtgtgataaaaactaatatAAAAGCAATTCATAACGCAGTTGAATACATGTGTTACg                                                                                          >  1:1795142‑M1/54‑91 (MQ=255)

  tAGGTGAGCAACGTATTAAGGATGCAATCCAGAGAACAATAAATAATTAAGAAAAAGCAATTCATAACGCAGTTGAATACATGTGTTACga                                                                                         >  1:468947‑M2/1‑89 (MQ=255)

   aGGTGAGCAACGTATTAAGGATGCAATCCAGAGAACAATAAATAATTAAGAAAAAGCAATTCATAACGCAGTTGAATACATGTGTTACgaa                                                                                        >  1:491764‑M2/1‑88 (MQ=255)

    ggTGAGCAACGTATTAAGGATGCAATCCAGAGAACAATAAATAATTAAGAAAAAGCAATTCATAACGCAGTTGAATACATGTGTTACgaat                                                                                       >  1:1028170‑M2/1‑87 (MQ=255)

    ggTGAGCAACGTATTAAGGATGCAATCCAGAGAACAATAAATAATTAAGAAAAAGCAATTCATAACGCAGTTGAATACATGTGGTACgaat                                                                                       <  1:2075621‑M2/91‑5 (MQ=255)

     gTGAGCGACGTATTAAGGATGCAATCCAGAGAACAATAAATAATTAAGAAAAAGCAATTCATAACGCAGTTGAATACATGTGTTACgtatt                                                                                      <  1:3221210‑M2/91‑6 (MQ=255)

     gTGAGCAACGTATTAAGGATGCAATCCAGAGAACAATAAATAATTAAGAAAAAGCAATTCATAACGCAGTTGAATACATGTGTTACgaatt                                                                                      >  1:2532512‑M2/1‑86 (MQ=255)

       gctatcacggggttgcattaaaaaacttgtgtgataaaaactaatatAAAAGCAATTCATAACGCAGTTGAATACATGTGTTACGAATTGc                                                                                    >  1:1750222‑M1/48‑91 (MQ=255)

        ctatcacggggttgcattaaaaaacttgtgtgataaaaactaatatAAAAGCAATTCATAACGCAGTTGAATACATGTGTTACGAATTGCt                                                                                   >  1:2979484‑M1/47‑91 (MQ=255)

        ctatcacggggttgcattaaaaaacttgtgtgataaaaactaatatAAAAGCAATTCATAACGCAGTTGAATACATGTGTTACGAATTGCt                                                                                   >  1:3355651‑M1/47‑91 (MQ=255)

        aGCAACGTATTAAGGATGCAATCCAGAGAACAATAAATAATTAAGAAAAAGCAATTCATAACGCAGTTGAATACATGTGTTACgaattgct                                                                                   >  1:196564‑M2/1‑83 (MQ=255)

             cGTATTAAGGATGCAATCCAGAGAACAATAAATAATTAAGAAAAAGCAATTCATAACGCAGTTGAATACATGTGTTACGAATTGCTTTtat                                                                              >  1:1213589/1‑91 (MQ=255)

             cGTATTAAGGATGCAATCCAGAGAACAATAAATAATTAAGAAAAAGCAATTCATAACGCAGTTGAATACATGTGTTACGAATTGCTTTtat                                                                              <  1:1279092/91‑1 (MQ=255)

              gTATTAAGGATGCAATCCAGAGAACAATAAATAATTAAGAAAAAGCAATTCATAACGCAGTTGAATACATGTGTTACGAATTGCTTTtata                                                                             <  1:2113272/91‑1 (MQ=255)

              gTATTAAGGATGCAATCCAGAGAACAATAAATAATTAAGAAAAAGCAATTCATAACGCAGTTGAATACATGTGTTACGAATTGCTTTtata                                                                             <  1:2109446/91‑1 (MQ=255)

              gTATTAAGGATGCAATCCAGAGAACAATAAATAATTAAGAAAAAGCAATTCATAACGCAGTTGAATACATGTGTTACGAATTGCTTTtata                                                                             <  1:952248/91‑1 (MQ=255)

              gTATTAAGGATGCAATCCAGAGAACAATAAATAATTAAGAAAAAGCAATTCATAACGCAGTTGAATACATGTGTTACGAATTGCTTTtata                                                                             <  1:1445182/91‑1 (MQ=255)

               tATTAAGGATGCAATCCAGAGAACAATAAATAATTAAGAAAAAGCAATTCATAACGCAGTTGAATACATGTGTTACGAATTGCTTTTatat                                                                            <  1:2624435/91‑1 (MQ=255)

                aTTAAGGATGCAATCCAGAGAACAATAAATAATTAAGAAAAAGCAATTCGTAACGCAGTTGAATACATGTGTTACGAATTGCTTTTATAtt                                                                           <  1:3598916/91‑1 (MQ=255)

                aTTAAGGATGCAATCCAGAGAACAATAAATAATTAAGAAAAAGCAATTCATAACGCAGTTGAATACATGTGTTACGAATTGCTTTTATAtt                                                                           >  1:2944545/1‑91 (MQ=255)

                 ttAAGGATGCAATCCAGAGAACAATAAATAATTAAGAAAAAGCAATTCATAACGCAGTTGAATACATGTGTTACGAATTGCTTTTATATTa                                                                          >  1:1482481/1‑91 (MQ=255)

                 ggttgcattaaaaaacttgtgtgataaaaactaatatAAAAGCAATTCATAACGCAGTTGAATACATGTGTTACGAATTGCTTTTATATTa                                                                          >  1:2309281‑M1/38‑91 (MQ=255)

                 ggttgcattaaaaaacttgtgtgataaaaactaatatAAAAGCAATTCATAACGCAGTTGAATACATGTGTTACGAATTGCTTTTATATTa                                                                          >  1:2309395‑M1/38‑91 (MQ=255)

                      gATGCAATCCAGAGAACAATAAATAATTAAGAAAAAGCAATTCATAACGCAGTTGAATACATGTGTTACGAATTGCTTTTATATTAGtttt                                                                     >  1:1089816/1‑91 (MQ=255)

                       aTGCAATCCAGAGAACAATAAATAATTAAGAAAAAGCAATTCATAACGCAGTTGAATACATGTGTTACGAATTGCTTTTATATTAGttttt                                                                    <  1:4063850/91‑1 (MQ=255)

                        tGCAATCCAGAGAACAATAAATAATTAAGAAAAAGCAATTCATAACGCAGTTGAATACATGTGTTACGAATTGCTTTTATATTAGTTTTTa                                                                   >  1:1991745/1‑91 (MQ=255)

                         gCAATCCAGAGAACAATAAATAATTAAGAAAAAGCAATTCATAACGCAGTTGAATACATGTGTTACGAATTGCTTTTATATTAGTTTTTAt                                                                  >  1:1340395/1‑91 (MQ=255)

                         gCAATCCAGAGAACAATAAATAATTAAGAAAAAGCAATTCATAACGCAGTTGAATACATGTGTTACGAATTGCTTTTATATTAGTTTTTAt                                                                  >  1:1340215/1‑91 (MQ=255)

                           aaTCCAGAGTACAATAAATAATTAAGAAAAAGCAATTCATAACGCAGTTGAATACATGTGTTACGAATTGCTTTTATATTAGTTTTTATca                                                                >  1:2093611/1‑91 (MQ=255)

                           aaTCCAGAGAACAATAAATAATTAAGAAAAAGCAATTCATAACGCAGTTGAATACATGTGTTACGAATTGCTTTTATATTAGTTTTTATca                                                                <  1:309110/91‑1 (MQ=255)

                            aTCCAGAGAACAATAAATAATTAAGAAAAAGCAATTCATAACGCAGTTGAATACATGTGTTACGAATTGCTTTTATATTAGTTTTTATcac                                                               <  1:2535969/91‑1 (MQ=255)

                               cAGAGAACAATAAATAATTAAGAAAAAGCAATTCATAACGCAGTTGAATACATGTGTTACGAATTGCTTTTATATTAGTTTTTATcacaca                                                            <  1:1478530/91‑1 (MQ=255)

                               cAGAGAACAATAAATAATTAAGAAAAAGCAATTCATAACGCAGTTGAATACATGTGTTACGAATTGCTTTTATATTAGTTTTTATcacaca                                                            <  1:2030962/91‑1 (MQ=255)

                                agagAACAATAAATAATTAAGAAAAAGCAATTCATAACGCAGTTGAATACATGTGTTACGAATTGCTTTTATATTAGTTTTTATCACACaa                                                           >  1:899838/1‑91 (MQ=255)

                                 ttgtgtgataaaaactaatatAAAAGCAATTCATAACGCAGTTGAATACATGTGTTACGAATTGCTTTTATATTAGTTTTTATCACACAAg                                                          >  1:3049036‑M1/22‑91 (MQ=255)

                                   gaACAATAAATAATTAAGAAAAAGCAATTCATAACGCAGTTGAATACATGTGTTACGAATTGCTTTTATATTAGTTTTTATCACACAAGtt                                                        <  1:1030388/91‑1 (MQ=255)

                                   gaACAATAAATAATTAAGAAAAAGCAATTCATAACGCAGTTGAATACATGTGTTACGAATTGCTTTTATATTAGTTTTTATCACACAAGtt                                                        <  1:3076166/91‑1 (MQ=255)

                                    aaCAATAAATAATTAAGAAAAAGCAATTCATAACGCAGTTGAATACATGTGTTACGAATTGCTTTTATATTAGTTTTTATCACACAAGttt                                                       >  1:2746143/1‑91 (MQ=255)

                                     aCAATAAATAATTAAGAAAAAGCAATTCATAACGCAGTTGAATACATGTGTTACGAATTGCTTTTATATTAGTTTTTATCACACAAGtttt                                                      <  1:2005766/91‑1 (MQ=255)

                                     aCAATAAATAATTAAGAAAAAGCAATTCATAACGCAGTTGAATACATGTGTTACGAATTGCTTTTATATTAGTTTTTATCACACAAGtttt                                                      <  1:67442/91‑1 (MQ=255)

                                        ataaataaTTAAGAAAAAGCAATTCATAACGCAGTTGAATACATGTGTTACGAATTGCTTTTATATTAGTTTTTATCACACAAGTTTTTTa                                                   <  1:2689976/91‑1 (MQ=255)

                                        ataaataaTTAAGAAAAAGCAATTCATAACGCAGTTGAATACATGTGTTACGAATTGCTTTTATATTAGTTTTTATCACACAAGTTTTTTa                                                   <  1:1560571/91‑1 (MQ=255)

                                         taaataaTTAAGAAAAAGCAATTCATAACGCAGTTGAATACATGTGTTACGAATTGCTTTTATATTAGTTTTTATCACACAAGTTTTTTaa                                                  >  1:2961441/1‑91 (MQ=255)

                                         taaataaTTAAGAAAAAGCAATTCATAACGCAGTTGAATACATGTGTTACGAATTGCTTTTATATTAGTTTTTATCACACAAGTTTTTTaa                                                  >  1:1935107/1‑91 (MQ=255)

                                          aaataaTTAAGAAAAAGCAATTCATAACGCAGTTGAATACATGTGTTACGAATTGCTTTTATATTAGTTTTTATCACACAAGTTTTTTAAt                                                 >  1:2217408/1‑91 (MQ=255)

                                          aaataaTTAAGAAAAAGCAATTCATAACGCAGTTGAATACATGTGTTACGAATTGCTTTTATATTAGTTTTTATCACACAAGTTTTTTAAt                                                 >  1:2217527/1‑91 (MQ=255)

                                           aataatTAAGAAAAAGCAATTCATAACGCAGTTGAATACATGTGTTACGAATTGCTTTTATATTAGTTTTTATCACACAAGTTTTTTAATg                                                <  1:2461257/91‑1 (MQ=255)

                                           aataatTAAGAAAAAGCAATTCATAACGCAGTTGAATACATGTGTTACGAATTGCTTTTATATTAGTTTTTATCACACAAGTTTTTTAATg                                                <  1:348570/91‑1 (MQ=255)

                                           aataatTAAGAAAAAGCAATTCATAACGCAGTTGAATACATGTGTTACGAATTGCTTTTATATTAGTTTTTATCACACAAGTTTTTTAATg                                                <  1:348524/91‑1 (MQ=255)

                                           aataatTAAGAAAAAGCAATTCATAACGCAGTTGAATACATGTGTTACGAATTGCTTTTATATTAGTTTTTATCACACAAGTTTTTTAATg                                                <  1:2979490/91‑1 (MQ=255)

                                            ataatTAAGAAAAAGCAATTCATAACGCAGTTGAATACATGTGTTACgaattgctttttcttaattatttattgttctctggattgcatcc                                               <  1:2652836‑M2/91‑45 (MQ=255)

                                                ttAAGAAAAAGCAATTCATAACGCAGTTGAATACATGTGTTACGAATTGCTTTTATATTAGTTTTTATCACACAAGTTTTTTAATGCAAcc                                           <  1:2259451/91‑1 (MQ=255)

                                                ttAAGAAAAAGCAATTCATAACGCAGTTGAATACATGTGTTACGAATTGCTTTTATATTAGTTTTTATCACACAAGTTTTTTAATGCAAcc                                           <  1:3417258/91‑1 (MQ=255)

                                                ttAAGAAAAAGCAATTCATAACGCAGTTGAATACATGTGTTACGAATTGCTTTTATATTAGTTTTTATCACACAAGTTTTTTAATGCAAcc                                           <  1:3155471/91‑1 (MQ=255)

                                                   aGAAAAAGCAATTCATAACGCAGTTGAATACATGTGTTACGAATTGCTTTTATATTAGTTTTTATCACACAAGTTTTTTAATGCAACCCCg                                        >  1:2332734/1‑91 (MQ=255)

                                                   aGAAAAAGCAATTCATAACGCAGTTGAATACATGTGTTACGAATTGCTTTTATATTAGTTTTTATCACACAAGTTTTTTAATGCAACCCCg                                        >  1:843435/1‑91 (MQ=255)

                                                   aGAAAAAGCAATTCATAACGCAGTTGAATACATGTGTTACGAATTGCTTTTATATTAGTTTTTATCACACAAGTTTTTTAATGCAACCCCg                                        >  1:2437285/1‑91 (MQ=255)

                                                     aaaaaGCAATTCATAACGCAGTTGAATACATGTGTTACgaattgctttttcttaattatttattgttctctggattgcatccttaatacgt                                      <  1:1066625‑M2/91‑54 (MQ=255)

                                                     aaaaaGCAATTCATAACGCAGTTGAATACATGTGTTACGAATTGCTTTTATATTAGTTTTTATCACACAAGTTTTTTAATGCAACCCCGTg                                      <  1:2903084/91‑1 (MQ=255)

                                                       AAAGCAATTCATAACGCAGTTGAATACATGTGTTACGAATTGCTTTTATATTAGTTTTTATCACACAAGTTTTTTAATGCAACCCCGTGAt                                    >  1:2534189‑M1/1‑91 (MQ=255)

                                                       AAAGCAATTCATAACGCAGTTGAATACATGTGTTACGAATTGCTTTTATATTAGTTTTTATCACACAAGTTTTTTAATGCAACCCCGTGAt                                    >  1:2533954‑M1/1‑91 (MQ=255)

                                                        AAGGAATTCATAACGCAGTTGAATACATGTGTTACGAATTGCTTTTATATTAGTTTTTATCACACAAGTTTTTTAATGCAACCCCGTGATa                                   >  1:3729925‑M1/1‑91 (MQ=255)

                                                        AAGCAATTCATAACGCAGTTGAATACATGTGTTACGAATTGCTTTTATATTAGTTTTTATCACACAAGTTTTTTAATGCAACCCCGTGATa                                   >  1:2810975‑M1/1‑91 (MQ=255)

                                                         AGCAATTCATAACGCAGTTGAATACATGTGTTACGAATTGCTTTTATATTAGTTTTTATCACACAAGTTTTTTAATGCAACCCCGTGATAg                                  <  1:173520‑M1/91‑1 (MQ=255)

                                                         AGCAATTCATAACGCAGTTGAATACATGTGTTACGAATTGCTTTTATATTAGTTTTTATCACACAAGTTTTTTAATGCAACCCCGTGATAg                                  >  1:896581‑M1/1‑91 (MQ=255)

                                                         AGCAATTCATAACGCAGTTGAATACATGTGTTACGAATTGCTTTTATATTAGTTTTTATCACACAAGTTTTTTAATGCAACCCCGTGATAg                                  >  1:3708546‑M1/1‑91 (MQ=255)

                                                          GCAATTCATAACGCAGTTGAATACATGTGTTACGAATTGCTTTTATATTAGTTTTTATCACACAAGTTTTTTAATGCAACCCCGTGATAGc                                 >  1:3335371‑M1/1‑91 (MQ=255)

                                                          GCAATTCATAACGCAGTTGAATACATGTGTTACGAATTGCTTTTATATTAGTTTTTATCACACAAGTTTTTTAATGCAACCCCGTGATAGc                                 >  1:3052617‑M1/1‑91 (MQ=255)

                                                          GCAATTCATAACGCAGTTGAATACATGTGTTACGAATTGCTTTTATATTAGTTTTTATCACACAAGTTTTTTAATGCAACCCCGTGATAGc                                 <  1:109988‑M1/91‑1 (MQ=255)

                                                            AATTCATAACGCAGTTGAATACATGTGTTACGAATTGCTTTTATATTAGTTTTTATCACACAAGTTTTTTAATGCAACCCCGTGATAGCaa                               >  1:1024820‑M1/1‑91 (MQ=255)

                                                             aTTCATAACGCAGTTGAATACATGTGTTACgaattgctttttcttaattatttattgttctctggattgcatccttaatacgttgctcacc                              <  1:856584‑M2/91‑62 (MQ=255)

                                                               TCATAACGCAGTTGAATACATGTGTTACGAATTGCTTTTATATTAGTTTTTATCACACAAGTTTTTTAATGCAACCCCGTGATAGCAAAAc                            >  1:1683662‑M1/1‑91 (MQ=255)

                                                               TCATAACGCAGTTGAATACATGTGTTACGAATTGCTTTTATATTAGTTTTTATCACACAAGTTTTTTAATGCAACCCCGTGATAGCAAAAc                            >  1:1559952‑M1/1‑91 (MQ=255)

                                                                 aTAACGCAGTTGAATACATGTGTTACGAATTGCTTTTATATTAGTTTTTATCACACAAGTTTTTTAATGCAACCCCGTGATAGCAAAACTc                          <  1:1888530/91‑1 (MQ=255)

                                                                 aTAACGCAGTTGAATACATGTGTTACGAATTGCTTTTATATTAGTTTTTATCACACAAGTTTTTTAATGCAACCCCGTGATAGCAAAACTc                          >  1:116569/1‑91 (MQ=255)

                                                                  tAACGCAGTTGAATACATGTGTTACGAATTGCTTTTATATTAGTTTTTATCACACAAGTTTTTTAATGCAACCCCGTGATAGCAAAACTCa                         <  1:1158746/91‑1 (MQ=255)

                                                                  tAACGCAGTTGAATACATGTGTTACGAATTGCTTTTATATTAGTTTTTATCACACAAGTTTTTTAATGCAACCCCGTGATAGCAAAACTCa                         <  1:703400/91‑1 (MQ=255)

                                                                   aaCGCAGTTGAATACATGTGTTACGAATTGCTTTTATATTAGTTTTTATCACACAAGTTTTTTAATGCAACCCCGTGATAGCAAAACTCat                        >  1:3862282/1‑91 (MQ=255)

                                                                    aCGCAGTTGAATACATGTGTTACGAATTGCTTTTATATTAGTTTTTATCACACAAGTTTTTTAATGCAACCCCGTGATAGCAAAACTCata                       >  1:70754/1‑91 (MQ=255)

                                                                      gCAGTTGAATACATGTGTTACGAATTGCTTTTATATTAGTTTTTATCACACAAGTTTTTTAATGCAACCCCGTGATAGCAAAACTCATATg                     >  1:3723166/1‑91 (MQ=255)

                                                                        aGTTGAATACATGTGTTACGAATTGCTTTTATATTAGTTTTTATCACACAAGTTTTTTAATGCAACCCCGTGATAGCAAAACTCATATGTa                   <  1:3141206/91‑1 (MQ=255)

                                                                          ttGAATACATGTGTTACgaattgctttttcttaattatttattgttctctggattgcatccttaatacgttgctcacctactacaaatttt                 <  1:1490494‑M2/91‑75 (MQ=255)

                                                                          ttGAATACATGTGTTACGAATTGCTTTTATATTAGTTTTTATCACACAAGTTTTTTAATGCAACCCCGTGATAGCAAAACTCATATGTAGa                 >  1:3626202/1‑91 (MQ=255)

                                                                          ttGAATACATGTGTTACGAATTGCTTTTATATTAGTTTTTATCACACAAGTTTTTTAATGCAACCCCGTGATAGCAAAACTCATATGTAGa                 >  1:3626248/1‑91 (MQ=255)

                                                                           tGAATACATGTGTTACGAATTGCTTTTATATTAGTTTTTATCACACAAGTTTTTTAATGCAACCCCGTGATAGCAAAACTCATATGTAGat                >  1:240195/1‑91 (MQ=255)

                                                                             aaTACATGTGTTACGAATTGCTTTTATATTAGTTTTTATCACACAAGTTTTTTAATGCAACCCCGTGATAGCAAAACTCATATGTAGataa              >  1:2198966/1‑91 (MQ=255)

                                                                              aTACATGTGTTACGAATTGCTTTTATATTAGTTTTTATCACACAAGTTTTTTAATGCAACCCCGTGATAGCAAAACTCATATGTAGataat             <  1:3143920/91‑1 (MQ=255)

                                                                              aTACATGTGTTACGAATTGCTTTTATATTAGTTTTTATCACACAAGTTTTTTAATGCAACCCCGTGATAGCAAAACTCATATGTAGataat             >  1:1694897/1‑91 (MQ=255)

                                                                              aTACATGTGTTACGAATTGCTTTTATATTAGTTTTTATCACACAAGTTTTTTAATGCAACCCCGTGATAGCAAAACTCATATGTAGataat             >  1:3993074/1‑91 (MQ=255)

                                                                              aTACATGTGTTACGAATTGCTTTTATATTAGTTTTTATCACACAAGTTTTTTAATGCAACCCCGTGATAGCAAAACTCATATGTAGataat             <  1:3914586/91‑1 (MQ=255)

                                                                               tACATGTGTTACGAATTGCTTTTATATTAGTTTTTATCACACAAGTTTTTTAATGCAACCCCGTGATAGCAAAACTCATATGTAGataata            <  1:3795235/91‑1 (MQ=255)

                                                                               tACATGTGTTACGAATTGCTTTTATATTAGTTTTTATCACACAAGTTTTTTAATGCAACCCCGTGATAGCAAAACTCATATGTAGataata            <  1:3795096/91‑1 (MQ=255)

                                                                               tACATGTGTTACGAATTGCTTTTATATTAGTTTTTATCACACAAGTTTTTTAATGCAACCCCGTGATAGCAAAACTCATATGTAGataata            <  1:3794945/91‑1 (MQ=255)

                                                                                aCATGTGTTACGAATTGCTTTTATATTAGTTTTTATCACACAAGTTTTTTAATGCAACCCCGTGATAGCAAAACTCATATGTAGATAATAc           <  1:856401/91‑1 (MQ=255)

                                                                                 cATGTGTTACGAATTGCTTTTATATTAGTTTTTATCACACAAGTTTTTTAATGCAACCTCGTGATAGCAAAACTCATATGTAGATAATACa          >  1:3544647/1‑91 (MQ=255)

                                                                                  aTGTGTTACGAATTGCTTTTATATTAGTTTTTATCACACAAGTTTTTTAATGCAACCCCGTGATAGCAAAACTCATATGTAGATAATACAg         <  1:432925/91‑1 (MQ=255)

                                                                                  aTGTGTTACGAATTGCTTTTATATTAGTTTTTATCACACAAGTTTTTTAATGCAACCCCGTGATAGCAAAACTCATATGTAGATAATACAg         <  1:1688200/91‑1 (MQ=255)

                                                                                      gtTACGAAGTGCTTTTATATTAGTTTTTATCACACAAGTTTTTTAATGCAACCCCGTGATAGCAAAACTCATATGTAGATAATACAGCttt     <  1:2697673/91‑1 (MQ=255)

                                                                                         aCGAATTGCTTTTATATTAGTTTTTATCACACAAGTTTTTTAATGCAACCCCGTGATAGCAAAACTCATATGTAGATAATACAGCTTTTTc  >  1:1031524/1‑91 (MQ=255)

AGTAGGTGAGCAACGTATTAAGGATGCAATCCAGAGAACAATAAATAATTAAGAAAAAGCAATTCATAACGCAGTTGAATACATGTGTTACGAATTGCTTTTATATTAGTTTTTATCACACAAGTTTTTTAATGCAACCCCGTGATAGCAAAACTCATATGTAGATAATACAGCTTTTTC  >  USA300TCH1516_ALE/1355659‑1355838

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.