BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	= 1789640	81 (0.820)	5 (0.060)	5/138	NT	6.8%	intergenic (‑121/+49)	gapA2/coaE	Glyceraldehyde‑3‑phosphate dehydrogenase 2/Dephospho‑CoA kinase
*	?	USA300TCH1516_ALE	= 1789661	67 (0.790)	5 (0.060)	5/138	NT	6.8%	intergenic (‑142/+28)	gapA2/coaE	Glyceraldehyde‑3‑phosphate dehydrogenase 2/Dephospho‑CoA kinase

Only 100 of 133 total aligned reads displayed.

ATATTATATGAAATTTGAAAGCGTTTTCCGTTGATTTATTTATCTTTTTTATAAAAAATAGTCATTACTTACATACATCAACGCGTACGTAAAGTAATGACTTATTTATAGTGTAATATTAATCTTCTTCTCCGTAATTCGGCTTTTCAATATAACCTTCTTCTTCTAACAATCTCTCAAG  >  USA300TCH1516_ALE/1789571‑1789751

atatTATATGAAATTTGAAAGCGTTTTCCGTTGATTTATTTATCTTTTTTATAAAAAATAGTCATTACTTACATACATCAACGcgtacgta                                                                                            >  1:319436/1‑91 (MQ=255)

 gaaggttatattgaaaagccgaattacggagaagaagattaatattacactataaataAGTCATTACTTACATACATCAACGCGTACGTaa                                                                                           >  1:2975742‑M1/59‑91 (MQ=255)

  aaggttatattgaaaagccgaattacggagaagaagattaatattacactataaataAGTCATTACTTACATACATCAACGCGTACGTaaa                                                                                          >  1:1031432‑M1/58‑91 (MQ=255)

   ttatATGAAATTTGAAAGCGTTTTCCGTTGATTTATTTATCTTTTTTATAAAAAATAGTCATTACTTACATACATCAACGCGTACGTAaag                                                                                         <  1:2492473‑M2/91‑4 (MQ=255)

   aggttatattgaaaagccgaattacggagaagaagattaatattacactataaataAGTCATTACTTACATACATCAACGCGTACGTAAAg                                                                                         >  1:773531‑M1/57‑91 (MQ=255)

    tataTGAAATTTGAAAGCGTTTTCCGTTGATTTATTTATCTTTTTTATAAAAAATAGTCATTACTTACATACATCAACGCGTACGTAaagt                                                                                        >  1:198005‑M2/1‑87 (MQ=255)

     atatGAAATTTGAAAGCGTTTTCCGTTGATTTATTTATCTTTTTTATAAAAAATAGTCATTACTTACATACATCAACGCGTACGTAaagta                                                                                       >  1:1251053‑M2/1‑86 (MQ=255)

     atatGAAATTTGAAAGCGTTTTCCGTTGATTTATTTATCTTTTTTATAAAAAATAGTCATTACTTACATACATCAACGCGTACGTAaagta                                                                                       <  1:3798832‑M2/91‑6 (MQ=255)

     atatGAAATTTGAAAGCGTTTTCCGTTGATTTATTTATCTTTTTTATAAAAAATAGTCATTACTTACATACATCAACGCGTACGTAaagta                                                                                       >  1:3748523‑M2/1‑86 (MQ=255)

     atatGAAATTTGAAAGCGTTTTCCGTTGATTTATTTATCTTTTTTATAAAAAATAGTCATTACTTACATACATCAACGCGTACGTAaagta                                                                                       <  1:3633376‑M2/91‑6 (MQ=255)

      tatGAAATTTGAAAGCGTTTTCCGTTGATTTATTTATCTTTTTTATAAAAAATAGTCATTACTTACATACATCAACGCGTACGTAaagtaa                                                                                      <  1:3083231‑M2/91‑7 (MQ=255)

          aaaTTTGAAAGCGTTTTCCGTTGATTTATTTATCTTTTTTATAAAAAATAGTCATTACTTACATACATCAACGCGTACGTAaagtaatgac                                                                                  >  1:2134030‑M2/1‑81 (MQ=255)

          aaaTTTGAAAGCGTTTTCCGTTGATTTATTTATCTTTTTTATAAAAAATAGTCATTACTTACATACATCAACGCGTACGTAaagtaatgac                                                                                  >  1:1551710‑M2/1‑81 (MQ=255)

          aaaTTTGAAAGCGTTTTCCGTTGATTTATTTATCTTTTTTATAAAAAATAGTCATTACTTACATACATCAACGCGTACGTAaagtaatgac                                                                                  <  1:1830805‑M2/91‑11 (MQ=255)

           ttgaaaagccgaattacggagaagaagattaatattacactataaataAGTCATTACTTACATACATCAACGCGTACGTAAAGTAATGACt                                                                                 >  1:2510686‑M1/49‑91 (MQ=255)

           aaTTTGAAAGCGTTTTCCGTTGATTTATTTATCTTTTTTATAAAAAATAGTCATTACTTACATACATCAACGCGTACGTAaagtaatgact                                                                                 >  1:2530086‑M2/1‑80 (MQ=255)

             tttGAAAGCGTTTTCCGTTGATTTATTTATCTTTTTTATAAAAAATAGTCATTACTTACATACATCAACGCGTACGTAAAGTAATGACtta                                                                               >  1:20696/1‑91 (MQ=255)

              ttGAAAGCGTTTTCCGTTGATTTATTTATCTTTTTTATAAAAAATAGTCATTACTTACATACATCAACGCGTACGTAAAGTAATGACttat                                                                              <  1:3573837/91‑1 (MQ=255)

                gAAAGCGTTTTCCGTTGATTTATTTATCTTTTTTATAAAAAATAGTCATTACTTACATACATCAACGCGTACGTAAAGTAATGACttattt                                                                            >  1:913776/1‑91 (MQ=255)

                 aaaGCGTTTTCCGTTGATTTATTTATCTTTTTTATAAAAAATAGTCATTACTTACATACATCAACGCGTACGTAAAGTAATGACttattta                                                                           >  1:2336121/1‑91 (MQ=255)

                  aaGCGTTTTCCGTTGATTTATTTATCTTTTTTATAAAAAATAGTCATTACTTACATACATCAACGCGTACGTAAAGTAATGACttatttat                                                                          >  1:2308277/1‑91 (MQ=255)

                  aaGCGTTTTCCGTTGATTTATTTATCTTTTTTATAAAAAATAGTCATTACTTACATACATCAACGCGTACGTAAAGTAATGACttatttat                                                                          >  1:3704123/1‑91 (MQ=255)

                  aaGCGTTTTCCGTTGATTTATTTATCTTTTTTATAAAAAATAGTCATTACTTACATACATCAACGCGTACGTAAAGTAATGACttatttat                                                                          >  1:2307972/1‑91 (MQ=255)

                   aGCGTTTTCCGTTGATTTATTTATCTTTTTTATAAAAAATAGTCATTACTTACATACATCAACGCGTACGTAAAGTAATGACTTATTtata                                                                         >  1:742270/1‑91 (MQ=255)

                   aGCGTTTTCCGTTGATTTATTTATCTTTTTTATAAAAAATAGTCATTACTTACATACATCAACGCGTACGTAAAGTAATGACTTATTtata                                                                         >  1:377851/1‑91 (MQ=255)

                   aGCGTTTTCCGTTGATTTATTTATCTTTTTTATAAAAAATAGTCATTACTTACATACATCAACGCGTACGTAAAGTAATGACTTATTtata                                                                         >  1:3999322/1‑91 (MQ=255)

                      gTTTTCCGTTGATTTATTTATCTTTTTTATAAAAAATAGTCATTACTTACATACATCAACGCGTACGTAAAGTAATGACTTATTTATAgtg                                                                      <  1:3361422/91‑1 (MQ=255)

                       ttttCCGTTGATTTATTTATCTTTTTTATAAAAAATAGTCATTACTTACATACATCAACGCGTACGTAAAGTAATGACTTATTTATAgtgt                                                                     <  1:2425438/91‑1 (MQ=255)

                       attacggagaagaagattaatattacactataaataAGTCATTACTTACATACATCAACGCGTACGTAAAGTAATGACTTATTTATAgtgt                                                                     >  1:3457395‑M1/37‑91 (MQ=255)

                         ttCCGTTGATTTATTTATCTTTTTTATAAAAAATAGTCATTACTTACATACATCAACGCGTACGTAAAGTAATGACTTATTTATAGTGTaa                                                                   >  1:53072/1‑91 (MQ=255)

                             gTTGATTTATTTATCTTTTTTATAAAAAATAGTCATTACTTACATACATCAACGCGTACGTAAAGTAATGACTTATTTATAGTGTAATAtt                                                               <  1:2866684/91‑1 (MQ=255)

                             gTTGATTTATTTATCTTTTTTATAAAAAATAGTCATTACTTACATACATCAACGCGTACGTAAAGTAATGACTTATTTATAGTGTAATAtt                                                               >  1:449148/1‑91 (MQ=255)

                             gTTGATTTATTTATCTTTTTTATAAAAAATAGTCATTACTTACATACATCAACGCGTACGTAAAGTAATGACTTATTTATAGTGTAATAtt                                                               <  1:4096059/91‑1 (MQ=255)

                             gTTGATTTATTTATCTTTTTTATAAAAAATAGTCATTACTTACATACATCAACGCGTACGTAAAGTAATGACTTATTTATAGTGTAATAtt                                                               <  1:935968/91‑1 (MQ=255)

                              ttGATTTATTTATCTTTTTTATAAAAAATAGTCATTACTTACATACATCAACGCGTACGTAAAGTAATGACTTATTTATAGTGTAATATTa                                                              >  1:614136/1‑91 (MQ=255)

                              ttGATTTATTTATCTTTTTTATAAAAAATAGTCATTACTTACATACATCAACGCGTACGTAAAGTAATGACTTATTTATAGTGTAATATTa                                                              >  1:2947771/1‑91 (MQ=255)

                              ttGATTTATTTATCTTTTTTATAAAAAATAGTCATTACTTACATACATCAACGCGTACGTAAAGTAATGACTTATTTATAGTGTAATATTa                                                              >  1:2947502/1‑91 (MQ=255)

                              ttGATTTATTTATCTTTTTTATAAAAAATAGTCATTACTTACATACATCAACGCGTACGTAAAGTAATGACTTATTTATAGTGTAATATTa                                                              >  1:67467/1‑91 (MQ=255)

                               tGATTTATTTATCTTTTTTATAAAAAATAGTCATTACTTACATACATCAACGCGTACGTAAAGTAATGACTTATTTATAGTGTAATATTaa                                                             <  1:4093989/91‑1 (MQ=255)

                                gATTTATTTATCTTTTTTATAAAAAATAGTCATTACTTACATACATCAACGCGTACGTAAAGTAATGACTTATTTATAGTGTAATATTAAt                                                            >  1:1655366/1‑91 (MQ=255)

                                 atttatttATCTTTTTTATAAAAAATAGTCATTACTTACATACATCAACGCGTACGTAAAGTAATGACTTATTTATAGTGTAATATTAAtc                                                           <  1:2299881/91‑1 (MQ=255)

                                 atttatttATCTTTTTTATAAAAAATAGTCATTACTTACATACATCAACGCGTACGTAAAGTAATGACTTATTTATAGTGTAATATTAAtc                                                           <  1:1971431/91‑1 (MQ=255)

                                 atttatttATCTTTTTTATAAAAAATAGTCATTACTTACATACATCAACGCGTACGTAAAGTAATGACTTATTTATAGTGTAATATTAAtc                                                           <  1:3750846/91‑1 (MQ=255)

                                      tttatCTTTTTTATAAAAAATAGTCATTACTTACATACATCAACGCGTACGTAAAGTAATGACTTATTTATAGTGTAATATTAAtcttctt                                                      >  1:3039220/1‑91 (MQ=255)

                                       ttatCTTTTTTATAAAAAATAGTCATTACTTACATACATCAACGCGTACGTAAAGTAATGACTTATTTATAGTGTAATATTAAtcttcttc                                                     <  1:363393/91‑1 (MQ=255)

                                        tatCTTTTTTATAAAAAATAGTCATTACTTACATACATCAACGCGTACGTAAAGTAATGACTTATTTATAGTGTAATATTAAtcttcttct                                                    <  1:1993737/91‑1 (MQ=255)

                                        tatCTTTTTTATAAAAAATAGTCATTACTTACATACATCAACGCGTACGTAAAGTAATGACTTATTTATAGTGTAATATTAAtcttcttct                                                    >  1:826717/1‑91 (MQ=255)

                                          tCTTTTTTATAAAAAATAGTCATTACTTACATACATCAACGCGTACGTAAAGTAATGACTTATTTATAGTGTAATATTAATCTTCTTCTcc                                                  <  1:590441/91‑1 (MQ=255)

                                           cTTTTTTATAAAAAATAGTCATTACTTACATACATCAACGCGTACGTAAAGTAATGACTTATTTATAGTGTAATATTAATCTTCTTCTCCg                                                 <  1:2161663/91‑1 (MQ=255)

                                            ttttttATAAAAAATAGTCATTACTTACATACATCAACGCGTACGTAAAGTAATGACTTATTTATAGTGTAATATTAATCTTCTTCTCCGt                                                >  1:4084480/1‑91 (MQ=255)

                                            ttttttATAAAAAATAGTCATTACTTACATACATCAACGCGTACGTAAAGTAATGACTTATTTATAGTGTAATATTAATCTTCTTCTCCGt                                                >  1:513643/1‑91 (MQ=255)

                                             tttttATAAAAAATAGTCATTACTTACATACATCAACGCGTACGTAAAGTAATGACTTATTTATAGTGTAATATTAATCTTCTTCTCCGTa                                               <  1:2060046/91‑1 (MQ=255)

                                               tttATAAAAAATAGTCATTACTTACATACATCAACGCGTACGTAAAGTAATGACTTATTTATAGTGTAATATTAATCTTCTTCTCCGTAAt                                             >  1:1941512/1‑91 (MQ=255)

                                                 tataAAAAATAGTCATTACTTACATACATCAACGCGTACGTAAAGTAATGACTTATTTATAGTGTAATATTAATCTTCTTCTCCGTAATTc                                           <  1:3209375/91‑1 (MQ=255)

                                                  ataAAAAATAGTCATTACTTACATACATCAACGCGTACGTAAAGTAATGACTTATTTATAGTGTAATATTAATCTTCTTCTCCGTAATTCg                                          >  1:3997233/1‑91 (MQ=255)

                                                  ataAAAAATAGTCATTACTTACATACATCAACGCGTACGTAAAGTAATGACTTATTTATAGTGTAATATTAATCTTCTTCTCCGTAATTCg                                          >  1:3997176/1‑91 (MQ=255)

                                                  ataAAAAATAGTCATTACTTACATACATCAACGCGTACGTAAAGTAATGACTTATTTATAGTGTAATATTAATCTTCTTCTCCGTAATTCg                                          >  1:3063575/1‑91 (MQ=255)

                                                  ataAAAAATAGTCATTACTTACATACATCAACGCGTACGTAAAGTAATGACTTATTTATAGTGTAATATTAATCTTCTTCTCCGTAATTCg                                          >  1:63828/1‑91 (MQ=255)

                                                   taAAAAATAGTCATTACTTACATACATCAACGCGTACGTAAAGTAATGACTTATTTATAGTGTAATATTAATCTTCTTCTCCGTAATTCgg                                         >  1:414662/1‑91 (MQ=255)

                                                   taAAAAATAGTCATTACTTACATACATCAACGCGTACGTAAAGTAATGACTTATTTATAGTGTAATATTAATCTTCTTCTCCGTAATTCgg                                         >  1:414661/1‑91 (MQ=255)

                                                       aaaTAGTCATTACTTACATACATCAACGCGTACGTAAAGTAATGACTTATTTATAGTGTAATATTAATCTTCTTCTCCGTAATTCGGCttt                                     <  1:462335/91‑1 (MQ=255)

                                                         aTAGTCATTACTTACATACATCAACGCGTACGTAaagtaatgactattttttataaaaaagataaataaatcaacggaaaacgctttcaaa                                   <  1:1812436‑M2/91‑58 (MQ=255)

                                                            GTCATTACTTACATACATCAACGCGTACGTAAAGTAATGACTTATTTATAGTGTAATATTAATCTTCTTCTCCGTAATTCGGCTTTTCAat                                >  1:686031‑M1/1‑91 (MQ=255)

                                                            GTCATTACTTACATACATCAACGCGTACGTAAAGTAATGACTTATTTATAGTGTAATATTAATCTTCTTCTCCGTAATTCGGCTTTTCAat                                <  1:724364‑M1/91‑1 (MQ=255)

                                                            GTCATTACTTACATACATCAACGCGTACGTAAAGTAATGACTTATTTATAGTGTAATATTAATCTTCTTCTCCGTAATTCGGCTTTTCAat                                <  1:726997‑M1/91‑1 (MQ=255)

                                                            GTCATTACTTACATACATCAACGCGTACGTAAAGTAATGACTTATTTATAGTGTAATATTAATCTTCTTCTCCGTAATTCGGCTTTTCAat                                <  1:2459129‑M1/91‑1 (MQ=255)

                                                             TCATTACTTACATACATCAACGCGTACGTAAAGTAATGACTTATTTATAGTGTAATATTAATCTTCTTCTCCGTAATTCGGCTTTTCAata                               <  1:3586600‑M1/91‑1 (MQ=255)

                                                             TCATTACTTACATACATCAACGCGTACGTAAAGTAATGACTTATTTATAGTGTAATATTAATCTTCTTCTCCGTAATTCGGCTTTTCAata                               <  1:3670944‑M1/91‑1 (MQ=255)

                                                             TCATTACTTACATACATCAACGCGTACGTAAAGTAATGACTTATTTATAGTGTAATATTAATCTTCTTCTCCGTAATTCGGCTTTTCAata                               >  1:582664‑M1/1‑91 (MQ=255)

                                                              CATTACTTACATACATCAACGCGTACGTAAAGTAATGACTTATTTATAGTGTAATATTAATCTTCTTCTCCGTAATTCGGCTTTTCAatat                              <  1:1836980‑M1/91‑1 (MQ=255)

                                                              CATTACTTACATACATCAACGCGTACGTAAAGTAATGACTTATTTATAGTGTAATATTAATCTTCTTCTCCGTAATTCGGCTTTTCAatat                              >  1:800444‑M1/1‑91 (MQ=255)

                                                              CATTACATACATACATCAACGCGTACGTAAAGTAATGACTTATTTATAGTGTAATATTAATCTTCTTCTCCGTAATTCGGCTTTTCActat                              <  1:3221865‑M1/91‑1 (MQ=255)

                                                               ATTACTTACATACATCAACGCGTACGTAAAGTAATGACTTATTTATAGTGTAATATTAATCTTCTTCTCCGTAATTCGGCTTTTCAAtata                             >  1:3379790‑M1/1‑91 (MQ=255)

                                                                 TACTTACATACATCAACGCGTACGTAAAGTAATGACTTATTTATAGTGTAATATTAATCTTCTTCTCCGTAATTCGGCTTTTCAATATAAc                           >  1:282252‑M1/1‑91 (MQ=255)

                                                                 TACTTACATACATCAACGCGTACGTAAAGTAATGACTTATTTATAGTGTAATATTAATCTTCTTCTCCGTAATTCGGCTTTTCAATATAAc                           >  1:282153‑M1/1‑91 (MQ=255)

                                                                  ACTTACATACATCAACGCGTACGTAAAGTAATGACTTATTTATAGTGTAATATTAATCTTCTTCTCCGTAATTCGGCTTTTCAATATAAcc                          >  1:1181847‑M1/1‑91 (MQ=255)

                                                                   cttacATACATCAACGCGTACGTAaagtaatgactattttttataaaaaagataaataaatcaacggaaaacgctttcaaatttcatataa                         <  1:1493484‑M2/91‑68 (MQ=255)

                                                                   CTTACATACATCAACGCGTACGTAAAGTAATGACTTATTTATAGTGTAATATTAATCTTCTTCTCCGTAATTCGGCTTTTCAATATAACCt                         >  1:220677‑M1/1‑91 (MQ=255)

                                                                    TTACATACATCAACGCGTACGTAAAGTAATGACTTATTTATAGTGTAATATTAATCTTCTTCTCCGTAATTCGGCTTTTCAATATAACCtt                        >  1:2434370‑M1/1‑91 (MQ=255)

                                                                    TTACATACATCAACGCGTACGTAAAGTAATGACTTATTTATAGTGTAATATTAATCTTCTTCTCCGTAATTCGGCTTTTCAATATAACCtt                        >  1:2008368‑M1/1‑91 (MQ=255)

                                                                     TACATACATCAACGCGTACGTAAAGTAATGACTTATTTATAGTGTAATATTAATCTTCTTCTCCGTAATTCGGCTTTTCAATATAACCTTc                       >  1:54561‑M1/1‑91 (MQ=255)

                                                                       catacatCAACGCGTACGTAAAGTAATGACTTATTTATAGTGTAATATTAATCTTCTTCTCCGTAATTCGGCTTTTCAATATAACcttctt                     >  1:2884661/1‑91 (MQ=255)

                                                                       catacatCAACGCGTACGTAAAGTAATGACTTATTTATAGTGTAATATTAATCTTCTTCTCCGTAATTCGGCTTTTCAATATAACcttctt                     >  1:2884638/1‑91 (MQ=255)

                                                                        atacatCAACGCGTACGTAAAGTAATGACTTATTTATAGTGTAATATTAATCTTCTTCTCCGTAATTCGGCTTTTCAATATAACcttcttc                    >  1:981076/1‑91 (MQ=255)

                                                                          acatCAACGCGTACGTAAAGTAATGACTTATTTATAGTGTAATATTAATCTTCTTCTCCGTAATTCGGCTTTTCAATATAACcttcttctt                  <  1:1350390/91‑1 (MQ=255)

                                                                           catCAACGCGTACGTAAAGTAATGACTTATTTATAGTGTAATATTAATCTTCTTCTCCGTAATTCGGCTTTTCAATATAACCttcttcttc                 <  1:478715/91‑1 (MQ=255)

                                                                            atCAACGCGTACGTAAAGTAATGACTTATTTATAGTGTAATATTAATCTTCTTCTCCGTAATTCGGCTTTTCAATATAACCTtcttcttct                <  1:2531849/91‑1 (MQ=255)

                                                                             tCAACGCGTACGTAAAGTAATGACTTATTTATAGTGTAATATTAATCTTCTTCTCCGTAATTCGGCTTTTCAATATAACCTTCTTCTTCTa               >  1:427396/1‑91 (MQ=255)

                                                                             tCAACGCGTACGTAAAGTAATGACTTATTTATAGTGTAATATTAATCTTCTTCTCCGTAATTCGGCTTTTCAATATAACCTTCTTCTTCTa               >  1:1395834/1‑91 (MQ=255)

                                                                               aaCGCGTACCTAAAGTAATGACTTATTTATAGTGTAATATTAATCTTCTTCTCCGTAATTCGGCTTTTCAATATAACCTTCTTCTTCTAAc             >  1:2089379/1‑91 (MQ=255)

                                                                                     tacgtaAAGTAATGACTTATTTATAGTGTAATATTAATCTTCTTCTCCGTAATTCGGCTTTTCAATATAACCTTCTTCTTCTAACAAtctc       >  1:3323878/1‑91 (MQ=255)

                                                                                       cgtaAAGTAATGACTTATTTATAGTGTAATATTAATCTTCTTCTCCGTAATTCGGCTTTTCAATATAACCTTCTTCTTCTAACAAtctctc     <  1:1565058/91‑1 (MQ=255)

                                                                                       cgtaAAGTAATGACTTATTTATAGTGTAATATTAATCTTCTTCTCCGTAATTCGGCTTTTCAATATAACCTTCTTCTTCTAACAAtctctc     <  1:2688971/91‑1 (MQ=255)

                                                                                        gtaAAGTAATGACTTATTTATAGTGTAATATTAATCTTCTTCTCCGTAATTCGGCTTTTCAATATAACCTTCTTCTTCTAACAATCTCTCa    <  1:1777081/91‑1 (MQ=255)

                                                                                        gtaAAGTAATGACTTATTTATAGTGTAATATTAATCTTCTTCTCCGTAATTCGGCTTTTCAATATAACCTTCTTCTTCTAACAATCTCTCa    >  1:3888298/1‑91 (MQ=255)

                                                                                          aaaGTAATGACTTATTTATAGTGTAATATTAATCTTCTTCTCCGTAATTCGGCTTTTCAATATAACCTTCTTCTTCTAACAATCTCTCAAg  <  1:1517842/91‑1 (MQ=255)

                                                                                          aaaGTAATGACTTATTTATAGTGTAATATTAATCTTCTTCTCCGTAATTCGGCTTTTCAATATAACCTTCTTCTTCTAACAATCTCTCAAg  <  1:1517574/91‑1 (MQ=255)

                                                                                          aaaGTAATGACTTATTTATAGTGTAATATTAATCTTCTTCTCCGTAATTCGGCTTTTCAATATAACCTTCTTCTTCTAACAATCTCTCAAg  <  1:1517067/91‑1 (MQ=255)

                                                                                          aaaGTAATGACTTATTTATAGTGTAATATTAATCTTCTTCTCCGTAATTCGGCTTTTCAATATAACCTTCTTCTTCTAACAATCTCTCAAg  <  1:2605413/91‑1 (MQ=255)

                                                                                          aaaGTAATGACTTATTTATAGTGTAATATTAATCTTCTTCTCCGTAATTCGGCTTTTCAATATAACCTTCTTCTTCTAACAATCTCTCAAg  <  1:1282600/91‑1 (MQ=255)

ATATTATATGAAATTTGAAAGCGTTTTCCGTTGATTTATTTATCTTTTTTATAAAAAATAGTCATTACTTACATACATCAACGCGTACGTAAAGTAATGACTTATTTATAGTGTAATATTAATCTTCTTCTCCGTAATTCGGCTTTTCAATATAACCTTCTTCTTCTAACAATCTCTCAAG  >  USA300TCH1516_ALE/1789571‑1789751

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.