BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	2679952 =	120 (1.220)	6 (0.080)	4/130	NT	6.2%	intergenic (+4/+756)	ssaA2_4/USA300HOU_RS13810	Staphylococcal secretory antigen ssaA2/hypothetical protein
*	?	USA300TCH1516_ALE	2681465 =	84 (1.050)	6 (0.080)	4/130	NT	6.2%	intergenic (‑500/+79)	USA300HOU_RS13810/mvaA	hypothetical protein/3‑hydroxy‑3‑methylglutaryl‑coenzyme A reductase

Only 100 of 112 total aligned reads displayed.

TTATTTACTTTTCATTAGACTGATTTACTAATCAAAAAACTTCTATCACGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGTTTTTATTTTTGTTCATATTAATTTATCTAAGCGCTACGATGGACTGACTTAAACTTTTCTTTAAAATCGCTATTCGCCATTTACTATTGTTGTCT  >  USA300TCH1516_ALE/2681376‑2681555

ttATTTACTTTTCATTAGACTGATTTACTAATCAAAAAACTTCTATCACGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGTTTTTAt                                                                                           >  1:2453072/1‑91 (MQ=255)

 tATTTACTTTTCATTAGACTGATTTACTAATCAAAAAACTTCTATCACGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGTTTTTAtt                                                                                          <  1:725446/91‑1 (MQ=255)

 tATTTACTTTTCATTAGACTGATTTACTAATCAAAAAACTTCTATCACGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGTTTTTAtt                                                                                          <  1:1098107/91‑1 (MQ=255)

  aTTTACTTTTCATTAGACTGATTTACTAATCAAAAAACTTCTATCACGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGTTTTTAttt                                                                                         >  1:2633682/1‑91 (MQ=255)

  aTTTACTTTTCATTAGACTGATTTACTAATCAAAAAACTTCTATCACGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGTTTTTAttt                                                                                         >  1:2721855/1‑91 (MQ=255)

   tttACTTTTCATTAGACTGATTTACTAATCAAAAAACTTCTATCACGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGTTTTTAtttt                                                                                        >  1:2101267/1‑91 (MQ=255)

    ttACTTTTCATTAGACTGATTTACTAATCAAAAAACTTCTATCACGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGTTTTTAttttt                                                                                       <  1:314988/91‑1 (MQ=255)

    ttACTTTTCATCAGACTGATTTACTAATCAAAAAACTTCTATCACGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGTTTTTAttttt                                                                                       <  1:3762736/91‑1 (MQ=255)

     tACTTTTCATTAGACTGATTTACTAATCAAAAAACTTCTATCACGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGTTTTTATTTTTg                                                                                      >  1:3702880/1‑91 (MQ=255)

      aCTTTTCATTAGACTGATTTACTAATCAAAAAACTTCTATCACGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGTTTTTATTTTTGt                                                                                     <  1:3521161/91‑1 (MQ=255)

       cTTTTCATTAGACTGATTTACTAATCAAAAAACTTCTATCACGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGTTTTTATTTTTGtt                                                                                    >  1:2043322/1‑91 (MQ=255)

        ttttCATTAGACTGATTTACTAATCAAAAAACTTCTATCACGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGTTTTTATTTTTGTTc                                                                                   <  1:3765327/91‑1 (MQ=255)

         tttCATTAGACTGATTTACTAATCAAAAAACTTCTATCACGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGTTTTTATTTTTGTTCa                                                                                  <  1:2900358/91‑1 (MQ=255)

           tCATTAGACTGATTTACTAATCAAAAAACTTCTATCACGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGTTTTTATTTTTGTTCata                                                                                <  1:3553179/91‑1 (MQ=255)

           tCATTAGACTGATTTACTAATCAAAAAACTTCTATCACGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGTTTTTATTTTTGTTCata                                                                                >  1:1782219/1‑91 (MQ=255)

           tCATTAGACTGATTTACTAATCAAAAAACTTCTATCACGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGTTTTTATTTTTGTTCata                                                                                <  1:1322806/91‑1 (MQ=255)

           tCATTAGACTGATTTACTAATCAAAAAACTTCTATCACGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGTTTTTATTTTTGTTCata                                                                                <  1:1323083/91‑1 (MQ=255)

            cATTAGACTGATTTACTAATCAAAAAACTTCTATCACGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGTTTTTATTTTTGTTCatat                                                                               >  1:2684803/1‑91 (MQ=255)

            cATTAGACTGATTTACTAATCAAAAAACTTCTATCACGAACGCTTCAATTTCCTGTATGCGGGTGATAGAAGTTTTTATTTTTGTTCatat                                                                               >  1:1919146/1‑91 (MQ=255)

             aTTAGACTGATTTACTAATCAAAAAACTTCTATCACGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGTTTTTATTTTTGTTCATAtt                                                                              <  1:2795741/91‑1 (MQ=255)

             aTTAGACTGATTTACTAATCAAAAAACTTCTATCACGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGTTTTTATTTTTGTTCATAtt                                                                              <  1:2925977/91‑1 (MQ=255)

                 gACTGATTTACTAATCAAAAAACTTCTATCACGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGTTTTTATTTTTGTTCATATTAAtt                                                                          >  1:4028198/1‑91 (MQ=255)

                  aCTGATTTACTAATCAAAAAACTTCTATCACGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGTTTTTATTTTTGTTCATATTAAttt                                                                         >  1:4133494/1‑91 (MQ=255)

                  aCTGATTTACTAATCAAAAAACTTCTATCACGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGTTTTTATTTTTGTTCATATTAAttt                                                                         >  1:1989880/1‑91 (MQ=255)

                  aCTGATTTACTAATCAAAAAACTTCTATCACGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGTTTTTATTTTTGTTCATATTAAttt                                                                         >  1:969242/1‑91 (MQ=255)

                  aCTGATTTACTAATCAAAAAACTTCTATCACGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGTTTTTATTTTTGTTCATATTAAttt                                                                         >  1:1850178/1‑91 (MQ=255)

                  aCTGATTTACTAATCAAAAAACTTCTATCACGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGTTTTTATTTTTGTTCATATTAAttt                                                                         >  1:1850203/1‑91 (MQ=255)

                      aTTTACTAATCAAAAAACTTCTATCACGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGTTTTTATTTTTGTTCATATTAATTTATCt                                                                     >  1:3802530/1‑91 (MQ=255)

                       tttACTAATCAAAAAACTTCTATCACGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGTTTTTATTTTTGTTCATATTAATTTATCTa                                                                    >  1:349742/1‑91 (MQ=255)

                       tttACTAATCAAAAAACTTCTATCACGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGTTTTTATTTTTGTTCATATTAATTTATCTa                                                                    >  1:3845119/1‑91 (MQ=255)

                       tttACTAATCAAAAAACTTCTATCACGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGTTTTTATTTTTGTTCATATTAATTTATCTa                                                                    >  1:652269/1‑91 (MQ=255)

                          aCTAATCAAAAAACTTCTATCACGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGTTTTTATTTTTGTTCATATTAATTTATCTAAgc                                                                 >  1:2726722/1‑91 (MQ=255)

                          aCTAATCAAAAAACTTCTATCACGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGTTTTTATTTTTGTTCATATTAATTTATCTAAgc                                                                 >  1:1350338/1‑91 (MQ=255)

                          aCTAATCAAAAAACTTCTATCACGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGTTTTTATTTTTGTTCATATTAATTTATCTAAgc                                                                 >  1:2726669/1‑91 (MQ=255)

                           cTAATCAAAAAACTTCTATCACGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGTTTTTATTTTTGTTCATATTAATTTATCTAAgcg                                                                <  1:636027/91‑1 (MQ=255)

                           cTAATCAAAAAACTTCTATCACGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGTTTTTATTTTTGTTCATATTAATTTATCTAAgcg                                                                <  1:635993/91‑1 (MQ=255)

                           cTAATCAAAAAACTTCTATCACGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGTTTTTATTTTTGTTCATATTAATTTATCTAAgcg                                                                >  1:1358782/1‑91 (MQ=255)

                           cTAATCAAAAAACTTCTATCACGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGTTTTTATTTTTGTTCATATTAATTTATCTAAgcg                                                                <  1:3026813/91‑1 (MQ=255)

                             aaTCGAAAAACTTCTATCACGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGTTTTTATTTTTGTTCATATTAATTTATCTAAGCGCt                                                              >  1:2062241/1‑91 (MQ=255)

                             aaTCGAAAAACTTCTATCACGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGTTTTTATTTTTGTTCATATTAATTTATCTAAGCGCt                                                              >  1:2062099/1‑91 (MQ=255)

                                cAAAAAACTTCTATCACGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGTTTTTATTTTTGTTCATATTAATTTATCTAAGCGCTACg                                                           >  1:46173/1‑91 (MQ=255)

                                ataaaaacttctatcccacgcatacaggaaattgaagcgttcgtgatagaagtttttAATTTTGTTCATATTACTTTATCTAAGCGCTACg                                                           >  1:3544638‑M2/58‑91 (MQ=255)

                                 aaaaaaCTTCTATCACGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGTTTTTATTTTTGTTCATATTAATTTATCTAAGCGCTACGa                                                          <  1:756816/91‑1 (MQ=255)

                                 aaaaaaCTTCTATCACGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGTTTTTATTTTTGTTCATATTAATTTATCTAAGCGCTACGa                                                          <  1:3001965/91‑1 (MQ=255)

                                  aaaaaCTTCTATCACGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGTTTTTATTTTTGTTCATATTAATTTATCTAAGCGCTACGAt                                                         >  1:2342108/1‑91 (MQ=255)

                                  aaaaaCTTCTATCACGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGTTTTTATTTTTGTTCATATTAATTTATCTAAGCGCTACGAt                                                         >  1:2342191/1‑91 (MQ=255)

                                   aaaaCTTCTATCACGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGTTTTTATTTTTGTTCATATTAATTTATCTAAGCGCTACGATg                                                        <  1:4128508/91‑1 (MQ=255)

                                   aaaaCTTCTATCACGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGTTTTTATTTTTGTTCATATTAATTTATCTAAGCGCTACGATg                                                        >  1:2062080/1‑91 (MQ=255)

                                   aaaaCTTCTATCACGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGTTTTTATTTTTGTTCATATTAATTTATCTAAGCGCTACGATg                                                        >  1:2063120/1‑91 (MQ=255)

                                         tctatcacacgcatacaggaaattgaagcgttcgtgatagaagtttttATTTTTGTTCATATTAATTTATCTAAGCGCTACGATGgactga                                                  >  1:1448569‑M2/49‑91 (MQ=255)

                                          cTATCACGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGTTTTTATTTTTGTTCATATTAATTTATCTAAGCGCTACGATGgactgac                                                 >  1:343162/1‑91 (MQ=255)

                                           tATCACGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGTTTTTATTTTTGTTCATATTAATTTATCTAAGCGCTACGATGgactgact                                                >  1:3001511/1‑91 (MQ=255)

                                           tATCACGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGTTTTTATTTTTGTTCATATTAATTTATCTAAGCGCTACGATGgactgact                                                >  1:1551529/1‑91 (MQ=255)

                                           tATCACGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGTTTTTATTTTTGTTCATATTAATTTATCTAAGCGCTACGATGgactgact                                                <  1:1991641/91‑1 (MQ=255)

                                           tATCACGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGTTTTTATTTTTGTTCATATTAATTTATCTAAGCGCTACGATGgactgact                                                <  1:2853114/91‑1 (MQ=255)

                                           tATCACGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGTTTTTATTTTTGTTCATATTAATTTATCTAAGCGCTACGATGgactgact                                                <  1:1818906/91‑1 (MQ=255)

                                           tATCACGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGTTTTTATTTTTGTTCATATTAATTTATCTAAGCGCTACGATGgactgact                                                <  1:1818920/91‑1 (MQ=255)

                                           tATCACGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGTTTTTATTTTTGTTCATATTAATTTATCTAAGCGCTACGATGgactgact                                                <  1:1852495/91‑1 (MQ=255)

                                            aTCACGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGTTTTTATTTTTGTTCATATTAATTTATCTAAGCGCTACGATGGACTGACtt                                               <  1:1518004/91‑1 (MQ=255)

                                             tCACGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGTTTTTATTTTTGTTCATATTAATTTATCTAAGCGCTACGATGGACTGACTTa                                              <  1:3886732/91‑1 (MQ=255)

                                             tCACGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGTTTTTATTTTTGTTCATATTAATTTATCTAAGCGCTACGATGGACTGACTTa                                              <  1:1524975/91‑1 (MQ=255)

                                             tCACGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGTTTTTATTTTTGTTCATATTAATTTATCTAAGCGCTACGATGGACTGACTTa                                              <  1:2444634/91‑1 (MQ=255)

                                              cACGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGTTTTTATTTTTGTTCATATTAATTTATCTAAGCGCTACGATGGACTGACTTaa                                             <  1:4009769/91‑1 (MQ=255)

                                              cACGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGTTTTTATTTTTGTTCATATTAATTTATCTAAGCGCTACGATGGACTGACTTaa                                             <  1:2343839/91‑1 (MQ=255)

                                               acacgcatacaggaaattgaagcgttcgtgatagaagtttttATTTTTGTTCATATTAATTTATCTAAGCGCTACGATGGACTGACTTaaa                                            >  1:1058027‑M2/43‑91 (MQ=255)

                                                cacgcatacaggaaattgaagcgttcgtgatagaagtttttATTTTTGTTCATATTAATTTATCTAAGCGCTACGATGGACTGACTTAAAc                                           >  1:3474486‑M2/42‑91 (MQ=255)

                                                cacgcatacaggaaattgaagcgttcgtgatagaagtttttATTTTTGTTCATATTAATTTATCTAAGCGCTACGATGGACTGACTTAAAc                                           >  1:2345629‑M2/42‑91 (MQ=255)

                                                  aaCGCTTCAATTTCCTGTATGCGTGTGATGGAAGTTTTTATTTTTGTTCATATTAATTTATCTAAGCGCTACGATGGACTGACTTAAACtt                                         <  1:3324599/91‑1 (MQ=255)

                                                    cGCTTCAATTTCCTGTATGCGTGTGATAGAAGTTTTTATTTTTGTTCATATTAATTTATCTAAGCGCTACGATGGACTGACTTAAACtttt                                       <  1:2806321/91‑1 (MQ=255)

                                                    cGCTTCAATTTCCTGTATGCGTGTGATAGAAGTTTTTATTTTTGTTCATATTAATTTATCTAAGCGCTACGATGGACTGACTTAAACtttt                                       <  1:2511189/91‑1 (MQ=255)

                                                      cTTCAATTTCCTGTATGCGTGTGATAGAAGTTTTTATTTTTGTTCATATTAATTTATCTAAGCGCTACGATGGACTGACTTAAACTTTTCt                                     <  1:2495929/91‑1 (MQ=255)

                                                       ttCAATTTCCTGTATGCGTGTGATAGAAGTTTTTATTTTTGTTCATATTAATTTATCTAAGCGCTACGATGGACTGACTTAAACTTTTCtt                                    >  1:1587524/1‑91 (MQ=255)

                                                       ttCAATTTCCTGTATGCGTGTGATAGAAGTTTTTATTTTTGTTCATATTAATTTATCTAAGCGCTACGATGGACTGACTTAAACTTATCtt                                    <  1:3275989/91‑1 (MQ=255)

                                                         cAATTTCCTGTATGCGTGTGATAGAAGTTTTTATTTTTGTTCATATTAATTTATCTAAGCGCTACGATGGACTGACTTAAACTTTTCTTTa                                  >  1:1088808/1‑91 (MQ=255)

                                                         cAATTTCCTGTATGCGTGTGATAGAAGTTTTTATTTTTGTTCATATTAATTTATCTAAGCGCTACGATGGACTGACTTAAACTTTTCTTTa                                  <  1:2103163/91‑1 (MQ=255)

                                                           aTTTCCTGTATGCGTGTGATAGAAGTTTTTATTTTTGTTCATATTAATTTATCTAAGCGCTACGATGGACTGACTTAAACTTTTCTTTaaa                                <  1:637072/91‑1 (MQ=255)

                                                           aTTTCCTGTATGCGTGTGATAGAAGTTTTTATTTTTGTTCATATTAATTTATCTAAGCGCTACGATGGACTGACTTAAACTTTTCTTTaaa                                <  1:2969854/91‑1 (MQ=255)

                                                            tttCCTGTATGCGTGTGATAGAAGTTTTTATTTTTGTTCATATTAATTTATCTAAGCGCTACGATGGACTGACTTAAACTTTTCTTTaaaa                               <  1:3737344/91‑1 (MQ=255)

                                                            tttCCTGTATGCGTGTGATAGAAGTTTTTATTTTTGTTCATATTAATTTATCTAAGCGCTACGATGGACTGACTTAAACTTTTCTTTaaaa                               <  1:3737503/91‑1 (MQ=255)

                                                              tCCTGTATGCGTGTGATAGAAGTTTTTATTTTTGTTCATATTAATTTATCTAAGCGCTACGATGGACTGACTTAAACTTTTCTTTAAAATc                             >  1:1904539/1‑91 (MQ=255)

                                                              tCCTGTATGCGTGTGATAGAAGTTTTTATTTTTGTTCATATTAATTTATCTAAGCGCTACGATGGACTGACTTAAACTTTTCTTTAAAATc                             >  1:1904437/1‑91 (MQ=255)

                                                              tCCTGTATGCGTGTGATAGAAGTTTTTATTTTTCTTCATATTAATTTATCTAAGCGCTACGATGGACTGACTTAAACTTTTCTTTAAAATc                             <  1:3521104/91‑1 (MQ=255)

                                                               ccTGTATGCGTGTGATAGAAGTTTTTATTTTTGTTCATATTAATTTATCTAAGCGCTACGATGGACTGACTTAAACTTTTCTTTAAAATCg                            >  1:1502885/1‑91 (MQ=255)

                                                                cTGTATGCGTGTGATAGAAGTTTTTATTTTTGTTCATATTAATTTATCTAAGCGCTACGATGGACTGACTTAAACTTTTCTTTAAAATCGc                           >  1:3521023/1‑91 (MQ=255)

                                                                 tGTATGCGTGTGATAGAAGTTTTTATTTTTGTTCATATTAATTTATCTAAGCGCTACGATGGACTGACTTAAACTTTTCTTTAAAATCGCt                          >  1:3812908/1‑91 (MQ=255)

                                                                    aTGCGTGTGATAGAAGTTTTTATTTTTGTTCATATTAATTTATCTAAGCGCTACGATGGACTGACTTAAACTTTTCTTTAAAATCGCTAtt                       <  1:3833866/91‑1 (MQ=255)

                                                                     tGCGTGTTATAGAAGTTTTTATTTTTGTTCATATTAATTTATCTAAGCGCTACGATGGACTGACTTAAACTTTTCTTTAAAATCGCTATTc                      <  1:2071577/91‑1 (MQ=255)

                                                                         tgtgATAGAAGTTTTTATTTTTGTTCATATTAATTTATCTAAGCGCTACGATGGACTGACTTAAACTTTTCTTTAAAATCGCTATTCGCCa                  <  1:650156/91‑1 (MQ=255)

                                                                         tgtgATAGAAGTTTTTATTTTTGTTCATATTAATTTATCTAAGCGCTACGATGGACTGACTTAAACTTTTCTTTAAAATCGCTATTCGCCa                  <  1:545136/91‑1 (MQ=255)

                                                                            gatagaagtttttATTTTTGTTCATATTAATTTATCTAAGCGCTACGATGGACTGACTTAAACTTTTCTTTAAAATCGCTATTCGCCAttt               <  1:1799782‑M2/78‑1 (MQ=255)

                                                                              tagaagtttttATTTTTGTTCATATTAATTTATCTAAGCGCTACGATGGACTGACTTAAACTTTTCTTTAAAATCGCTATTCGCCATTTAc             <  1:929127‑M2/80‑1 (MQ=255)

                                                                                gaagtttttATTTTTGTTCATATTAATTTATCTAAGCGCTACGATGGACTGACTTAAACTTTTCTTTAAAATCGCTATTCGCCATTTACTa           <  1:3230443‑M2/82‑1 (MQ=255)

                                                                                     ttttATTTTTGTTCATATTAATTTATCTAAGCGCTACGATGGACTGACTTAAACTTTTCTTTAAAATCGCTATTCGCCATTTACTAttgtt      <  1:1235130‑M2/87‑1 (MQ=255)

                                                                                      tttATTTTTTTTCATATTAATTTATCTAAGCGCTACGATAGACTGACTTAAACATTTCTTTAAAATCGCTATTCGCCATTTACTAttgttg     <  1:3484197‑M2/88‑1 (MQ=255)

                                                                                       ttATTTTTGTTCATATTAATTTATCTAAGCGCTACGATGGACTGACTTAAACTTTTCTTTAAAATCGCTATTCGCCATTTACTATtgttgt    <  1:3702806‑M2/89‑1 (MQ=255)

                                                                                        tATTTTTGTTCATATTAATTTATCTAAGCGCTACGATGGACTGACTTAAACTTTTCTTTAAAATCGCTATTCGCCATTTACTATTGTTGTc   <  1:1363084‑M2/90‑1 (MQ=255)

                                                                                        tATTTTTGTTCATATTAATTTATCTAAGCGCTACGATGGACTGACTTAAACTTTTCTTTAAAATCGCTATTCGCCATTTACTATTGTTGTc   <  1:637126‑M2/90‑1 (MQ=255)

                                                                                        tATTTTTGTTCATATTAATTTATCTAAGCGCTACGATGGACTGACTTAAACTTTTCTTTAAAATCGCTATTCGCCATTTACTATTGTTGTc   <  1:2658220‑M2/90‑1 (MQ=255)

                                                                                        tATTTTTGTTCATATTAATTTATCTAAGCGCTACGATGGACTGACTTAAACTTTTCTTTAAAATCGCTATTCGCCATTTACTATTGTTGTc   <  1:3652122‑M2/90‑1 (MQ=255)

                                                                                         aTTTTTGTTCATATTAATTTATCTAAGCGCTACGATGGACTGACTTAAACTTTTCTTTAAAATCGCTATTCGCCATTTACTATTGTTGTCt  <  1:209298/91‑1 (MQ=255)

TTATTTACTTTTCATTAGACTGATTTACTAATCAAAAAACTTCTATCACGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGTTTTTATTTTTGTTCATATTAATTTATCTAAGCGCTACGATGGACTGACTTAAACTTTTCTTTAAAATCGCTATTCGCCATTTACTATTGTTGTCT  >  USA300TCH1516_ALE/2681376‑2681555

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.