BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_012417	= 1057	545 (0.050)	427 (0.060)	37/124	NT	35.3%	coding (138/192 nt)	USA300HOU_RS15665	hypothetical protein
*	?	NC_012417	= 1071	1144 (0.150)	427 (0.060)	37/124	NT	35.3%	coding (124/192 nt)	USA300HOU_RS15665	hypothetical protein

Only 100 of 10799 total aligned reads displayed.

TTATTTAAGACATTAGTGTTGACTAATGTCTTTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAATATATTGTGTCACAAAAATAAGACAGTACAGCTTTGTATGATATCACTTTAAAATACCTTAAAAC  >  NC_012417/981‑1161

ttattTAAGACATTAGTGTTGACTAATGTCTTTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAg                                                                                            <  1:3140014/91‑1 (MQ=255)

ttattTAAGACATTAGTGTTGACTAATGTCTTTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAg                                                                                            <  1:3552533/91‑1 (MQ=255)

acaaaaAAGACATTAGTCAACACTAATGTCTTTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAg                                                                                            <  1:235646‑M1/85‑1 (MQ=255)

 tATTTAAGACATTAGTGTTGACTAATGTCTTTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGt                                                                                           >  1:877416‑M2/1‑90 (MQ=255)

 tATTTAAGACATTAGTGTTGACTAATGTCTTTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGt                                                                                           >  1:527572‑M2/1‑90 (MQ=255)

 tATTTAAGACATTAGTGTTGACTAATGTCTTTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGt                                                                                           >  1:654001‑M2/1‑90 (MQ=255)

  aTTAAAGACATTAGTGTTGACTAATGTCTTTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGtg                                                                                          >  1:3209821‑M2/1‑89 (MQ=255)

     tAAGACATTAGTGTTGACTAATGTCTTTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGtgtca                                                                                       >  1:918799‑M2/1‑86 (MQ=255)

     tAAGACATTAGTGTTGACTAATGTCTTTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGtgtca                                                                                       >  1:178722‑M2/1‑86 (MQ=255)

     gtgatatcatacaaagctgtactgtcttatttttgtgacacaatatattgcgttTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTca                                                                                       >  1:1744366‑M1/55‑91 (MQ=255)

      aagacattagtcaacactaatgtcttTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTcac                                                                                      >  1:1259374‑M2/27‑91 (MQ=255)

      aaGACATTAGTGTTGACTAATGTCTTTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGtgtcac                                                                                      >  1:465053‑M2/1‑85 (MQ=255)

       aGACATTAGTGTTGACTAATGTCTTTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGtgtcaca                                                                                     <  1:3062600‑M2/91‑8 (MQ=255)

        gACATTAGTGTTGACTAATGTCTTTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGtgtcacaa                                                                                    <  1:3594825‑M2/91‑9 (MQ=255)

          cattagtcaacactaatgtcttTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACaaaa                                                                                  >  1:2700075‑M2/23‑91 (MQ=255)

          cattagtcaacactaatgtcttTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACaaaa                                                                                  >  1:302690‑M2/23‑91 (MQ=255)

            ttAGTGTTGACTAATGTCTTTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGtgtcacaaaaat                                                                                <  1:2917411‑M2/91‑13 (MQ=255)

            ttAGTGTTGACTAATGTCTTTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGtgtcacaaaaat                                                                                >  1:2103572‑M2/1‑79 (MQ=255)

             tAGTGTTGACTAATGTCTTTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGGCAAATGCTGTATGTAGtgtcacaaaaata                                                                               >  1:351166‑M2/1‑78 (MQ=255)

              aGTGTTGACTAATGTCTTTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGtgtcacaaaaataa                                                                              <  1:3775235‑M2/91‑15 (MQ=255)

               gtgtTGACTAATGTCTTTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGtgtcacaaaaataag                                                                             <  1:3674955‑M2/91‑16 (MQ=255)

               gtgtTGACTAATGTCTTTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGtgtcacaaaaataag                                                                             <  1:2511231‑M2/91‑16 (MQ=255)

               gtgtTGACTAATGTCTTTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGtgtcacaaaaataag                                                                             <  1:4094288‑M2/91‑16 (MQ=255)

               gtcaacactaatgtcttTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAg                                                                             >  1:2216446‑M2/18‑91 (MQ=255)

                  aacactaATGTCTTTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGtgtcacaaaaataagaca                                                                          <  1:3814380‑M2/88‑19 (MQ=255)

                      ctaatgtcttTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACg                                                                      <  1:1337597‑M2/81‑1 (MQ=255)

                       taatgtcttTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGc                                                                     <  1:690920‑M2/82‑1 (MQ=255)

                        aatgtcttTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCa                                                                    >  1:1503305‑M2/9‑91 (MQ=255)

                        aatgtcttTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCa                                                                    <  1:612801‑M2/83‑1 (MQ=255)

                           gtcttTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAata                                                                 >  1:1646729‑M2/6‑91 (MQ=255)

                           gtcttTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAata                                                                 >  1:569985‑M2/6‑91 (MQ=255)

                           gtcttTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAata                                                                 >  1:1462853‑M2/6‑91 (MQ=255)

                            tcttTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAatat                                                                <  1:4133646‑M2/87‑1 (MQ=255)

                            tcttTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAatat                                                                >  1:2433760‑M2/5‑91 (MQ=255)

                              ttTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAatatat                                                              >  1:4020823‑M2/3‑91 (MQ=255)

                                  ttgttgATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAATATATTGtg                                                          >  1:1545142‑M2/1‑89 (MQ=255)

                                  ttgttgATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAATATATTGtg                                                          <  1:2880133‑M2/91‑3 (MQ=255)

                                  ttgttgATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAATATATTGtg                                                          >  1:1378004‑M2/1‑89 (MQ=255)

                                   tgttgATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAATATATTGtgt                                                         <  1:1083947‑M2/91‑4 (MQ=255)

                                    gttgATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAATATATTGtgtc                                                        <  1:2285890‑M2/91‑5 (MQ=255)

                                    gttgATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAATATATTGtgtc                                                        <  1:3634347‑M2/91‑5 (MQ=255)

                                    gttgATTGTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAATATATTGtgtc                                                        >  1:1150349‑M2/1‑87 (MQ=255)

                                     ttgATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAATATATTGtgtca                                                       <  1:2592498‑M2/91‑6 (MQ=255)

                                     ttgATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAATATATTGtgtca                                                       <  1:727687‑M2/91‑6 (MQ=255)

                                      tgATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAATATATTGtgtcac                                                      >  1:141205‑M2/1‑85 (MQ=255)

                                       gATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTCTGTAGtgtcacaaaaataagacagtacttttttataaaaaatca                                                     <  1:3284447‑M2/91‑40 (MQ=255)

                                       gATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAATATATTGtgtcaca                                                     >  1:1000‑M2/1‑84 (MQ=255)

                                       gATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAATATATTGtgtcaca                                                     <  1:1581237‑M2/91‑8 (MQ=255)

                                       gATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAATATATTGtgtcaca                                                     >  1:1894026‑M2/1‑84 (MQ=255)

                                         ttttttATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAATATATTGtgtcacaaa                                                   <  1:3983170‑M2/91‑10 (MQ=255)

                                         ttttttATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAATATATTGtgtcacaaa                                                   >  1:2662210‑M2/1‑82 (MQ=255)

                                         ttttttATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAATATATTGtgtcacaaa                                                   >  1:1925776‑M2/1‑82 (MQ=255)

                                              tataAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAATATATTGtgtcacaaaaataa                                              <  1:205570‑M2/91‑15 (MQ=255)

                                                 aaaaaaGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAATATATTGtgtcacaaaaataagac                                           <  1:1040644‑M2/91‑18 (MQ=255)

                                                   aaaaGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAATATATTGtgtcacaaaaataagacag                                         >  1:2775232‑M2/1‑72 (MQ=255)

                                                   aaaaGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAATATATTGtgtcacaaaaataagacag                                         >  1:2248599‑M2/1‑72 (MQ=255)

                                                   aaaaGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAATATATTGtgtcacaaaaataagacag                                         >  1:1959558‑M2/1‑72 (MQ=255)

                                                     aaGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAATATATTGtgtcacaaaaataagacagta                                       >  1:958197‑M2/1‑70 (MQ=255)

                                                     aaGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAATATATTGtgtcacaaaaataagacagta                                       >  1:2174031‑M2/1‑70 (MQ=255)

                                                      aGTACGGTCTTATTTTTGTGACAAAAGCTGTATGTAGTGGCACAAAAATAAGAGAAACGCAATATATTGtgtcacaaaaataagacagtac                                      >  1:3859655‑M2/1‑69 (MQ=255)

                                                        TACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAATATATTGTGTCACAAAAATAAGACAGTACAg                                    <  1:433357‑M1/91‑1 (MQ=255)

                                                        TACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAATATATTGTGTCACAAAAATAAGACAGTACAg                                    >  1:3437775‑M1/1‑91 (MQ=255)

                                                        TACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAATATATTGTGTCACAAAAATAAGACAGTACAg                                    >  1:493679‑M1/1‑91 (MQ=255)

                                                        TACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAATATATTGTGTCACAAAAATAAGACAGTACAg                                    >  1:1858365‑M1/1‑91 (MQ=255)

                                                         ACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAATATATTGTGTCACAAAAATAAGACAGTACAGc                                   >  1:1817289‑M1/1‑91 (MQ=255)

                                                         ACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAATATATTGTGTCACAAAAATAAGACAGTACAGc                                   <  1:3744666‑M1/91‑1 (MQ=255)

                                                          CTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAATATATTGTGTCACAAAAATAAGACAGTACAGCt                                  >  1:3399841‑M1/1‑91 (MQ=255)

                                                          CTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAATATATTGTGTCACAAAAATAAGACAGTACAGCt                                  <  1:2024377‑M1/91‑1 (MQ=255)

                                                          CTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAATATATTGTGTCACAAAAATAAGACAGTACAGCt                                  <  1:3900643‑M1/91‑1 (MQ=255)

                                                           TGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAATATATTGTGTCACAAAAATAAGACAGTACAGCtt                                 >  1:3943493‑M1/1‑91 (MQ=255)

                                                            GTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAATATATTGTGTCACAAAAATAAGACAGTACAGCttt                                <  1:758730‑M1/91‑1 (MQ=255)

                                                            GTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAATATATTGTGTCACAAAAATAAGACAGTACAGCttt                                >  1:2473474‑M1/1‑91 (MQ=255)

                                                                TATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAATATATTGTGTCACAAAAATAAGACAGTACAGCTTTGTAt                            >  1:2813640‑M1/1‑91 (MQ=255)

                                                                TATTTTTGTGACAAATACTGTATGTAGTGTCACAAAAATAAGACAAACGCAATATATTGTGTCACAAAAATAAGACAGTACAGCTTTGTAt                            >  1:1706650‑M1/1‑91 (MQ=255)

                                                                   TTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAATATATTGTGTCACAAAAATAAGACAGTACAGCTTTGTATGat                         >  1:1220444‑M1/1‑91 (MQ=255)

                                                                     ttGTGACAAATGCTGTATGTAGtgtcacaaaaataagacagtacttttttataaaaaatcaacaaaaaagacattagtcaacactaatgtc                       <  1:3712640‑M2/91‑70 (MQ=255)

                                                                     TTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAATATATTGTGTCACAAAAATAAGACAGTACAGCTTTGTATGatat                       >  1:3177717‑M1/1‑91 (MQ=255)

                                                                      TGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAATATATTGTGTCACAAAAATAAGACAGTACAGCTTTGTATGATATc                      <  1:25546‑M1/91‑1 (MQ=255)

                                                                      TGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAATATATTGTGTCACAAAAATAAGACAGTACAGCTTTGTATGATATc                      <  1:4061863‑M1/91‑1 (MQ=255)

                                                                      TGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAATATATTGTGTCACAAAAATAAGACAGTACAGCTTTGTATGATATc                      >  1:1991628‑M1/1‑91 (MQ=255)

                                                                       gtgACAAATGCTGTATGTAGtgtcacaaaaataagacagtacttttttataaaaaatcaacaaaaaagacattagtcaacactaatgtctt                     <  1:2734754‑M2/91‑72 (MQ=255)

                                                                        tgACAAATGCTGTATGTAGtgtcacaaaaataagacagtacttttttataaaaaatcaacaaaaaagacattagtcaacactaatgtctta                    <  1:161363‑M2/91‑73 (MQ=255)

                                                                        TGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAATATATTGTGTCACAAAAATAAGACAGTACAGCTTTGTATGATATCAc                    <  1:2950036‑M1/91‑1 (MQ=255)

                                                                         GACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAATATATTGTGTCACAAAAATAAGACAGTACAGCTTTGTATGATATCACt                   >  1:2318126‑M1/1‑91 (MQ=255)

                                                                         GACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAATATATTGTGTCACAAAAATAAGACAGTACAGCTTTGTATGATATCACt                   <  1:2137226‑M1/91‑1 (MQ=255)

                                                                         GACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAATATATTGCGTCACAAAAATAAGACAGTACAGCTTTGTATGATATCACt                   <  1:2844228‑M1/91‑1 (MQ=255)

                                                                           cAAATGCTGTATGTAGtgtcacaaaaataagacagtacttttttataaaaaatcaacaaaaaagacattagtcaacactaatgtcttaaat                 <  1:3474296‑M2/91‑76 (MQ=255)

                                                                            AAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAATATATTGTGTCACAAAAATAAGACAGTACAGCTTTGTATGATATCACTTTa                >  1:3097705‑M1/1‑91 (MQ=255)

                                                                              aTGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAATATATTGTGTCACAAAAATAAGACAGTACAGCTTTGTATGATATCACTTTaaa              >  1:335697/1‑91 (MQ=255)

                                                                               tGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAATATATTGTGTCACAAAAATAAGACAGTACAGCTTTGTATGATATCACTTTaaaa             <  1:298934/91‑1 (MQ=255)

                                                                                gCTGTATGTAGTGTCACAAAAATAAGACAAACGCAATATATTGTGTCACAAAAATAAGACAGTACAGCTTTGTATGATATCACTTTAAAAt            >  1:2397319/1‑91 (MQ=255)

                                                                                    tatgtaGTGTCACAAAAATAAGACAAACGCAATATATTGTGTCACAAAAATAAGACAGTACAGCTTTGTATGATATCACTTTAAAATACCt        >  1:3247075/1‑91 (MQ=255)

                                                                                    tatgtaGTGTCACAAAAATAAGACAAACGCAATATATTGTGTCACAAAAATAAGACAGTACAGCTTTGTATGATATCACTTTAAAATACCt        <  1:1677564/91‑1 (MQ=255)

                                                                                     atgtaGTGTCACAAAAATAAGACAAACGCGATATATTGTGTCACAAAAATAAGACAGTACAGCTTTGTATGATATCACTTTAAAATACCtt       <  1:3321383/91‑1 (MQ=255)

                                                                                     atgtaGTGTCACAAAAATAAGACAAACGCAATATATTGTGTCACAAAAATAAGCCAGTACAGCTTTGTATGATATCACTTTAAAATACCtt       >  1:2623885/1‑91 (MQ=255)

                                                                                     atgtaGTGTCACAAAAATAAGACAAACGCAATATATTGTGTCACAAAAATAAGACAGTACAGCTTTGTATGATATCACTTTAAAATACCtt       >  1:798718/1‑91 (MQ=255)

                                                                                     atgtaGTGTCACAAAAATAAGACAAACGCAATATATTGTGTCACAAAAATAAGACAGTACAGCTTTGTATGATATCACTTTAAAATACCtt       >  1:83749/1‑91 (MQ=255)

                                                                                     atgtaGTGTCACAAAAATAAGACAAACGCAATATATTGTGTCACAAAAATAAGACAGTACAGCTTTGTATGATATCACTTTAAAATACCtt       <  1:118388/91‑1 (MQ=255)

                                                                                        taGTGTCACAAAAATAAGACAAACGCAATATATTGTGTCACAAAAATAAGACAGTACAGCTTTGTATGATATCACTTTAAAATACCTTaaa    >  1:1121580/1‑91 (MQ=255)

                                                                                          gtgtCACAAAAATAAGACAAACGCAATATATTGTGTCACAAAAATAAGACAGTACAGCTTTGTATGATATCACTTTAAAATACCTTAAAAc  >  1:1301128/1‑91 (MQ=255)

TTATTTAAGACATTAGTGTTGACTAATGTCTTTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAATATATTGTGTCACAAAAATAAGACAGTACAGCTTTGTATGATATCACTTTAAAATACCTTAAAAC  >  NC_012417/981‑1161

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.