BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_012417	= 1057	545 (0.050)	89 (0.010)	25/116	NT	8.9%	coding (138/192 nt)	USA300HOU_RS15665	hypothetical protein
*	?	NC_012417	= 1103	1432 (0.200)	89 (0.010)	25/116	NT	8.9%	coding (92/192 nt)	USA300HOU_RS15665	hypothetical protein

Only 100 of 11216 total aligned reads displayed.

TTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAATATATTGTGTCACAAAAATAAGACAGTACAGCTTTGTATGATATCACTTTAAAATACCTTAAAACCCCTGGAATTTCTGGCTTTGCCAGACCTATCA  >  NC_012417/1013‑1193

ttttGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAATATATtg                                                                                            <  1:1373789/91‑1 (MQ=255)

 tttGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAATATATTGt                                                                                           >  1:281122‑M2/1‑90 (MQ=255)

 tttGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAATATATTGt                                                                                           >  1:2168347‑M2/1‑90 (MQ=255)

 tttGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAATATATTGt                                                                                           <  1:1739359‑M2/91‑2 (MQ=255)

    gttgATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTGTGTAGTGTCACAAAAATAAGACAAACGCAATATATTGtgtc                                                                                        >  1:3588402‑M2/1‑87 (MQ=255)

    gttgATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAATATATTGtgtc                                                                                        >  1:3543120‑M2/1‑87 (MQ=255)

    gttgATTGTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAATATATTGtgtc                                                                                        >  1:1150349‑M2/1‑87 (MQ=255)

     ttgATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAATATATTGtgtca                                                                                       >  1:4092403‑M2/1‑86 (MQ=255)

     ttgATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAATATATTGtgtca                                                                                       <  1:1971378‑M2/91‑6 (MQ=255)

      tgATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAATATATTGtgtcac                                                                                      >  1:686070‑M2/1‑85 (MQ=255)

       gATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAATATATTGtgtcaca                                                                                     >  1:1000‑M2/1‑84 (MQ=255)

       gATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAATATATTGtgtcaca                                                                                     <  1:1223321‑M2/91‑8 (MQ=255)

       gATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAATATATTGtgtcaca                                                                                     <  1:1852802‑M2/91‑8 (MQ=255)

       gATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAATATATTGtgtcaca                                                                                     <  1:1704852‑M2/91‑8 (MQ=255)

         ttttttATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAATATATTGtgtcacaaa                                                                                   >  1:729166‑M2/1‑82 (MQ=255)

         ttttttATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAATATATTGtgtcacaaa                                                                                   >  1:2662210‑M2/1‑82 (MQ=255)

         ttttttATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAATATATTGtgacacaaa                                                                                   >  1:3225476‑M2/1‑82 (MQ=255)

          tttttATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAATATATTGtgtcacaaaa                                                                                  >  1:2310014‑M2/1‑81 (MQ=255)

            tttATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAATATATTGtgtcacaaaaat                                                                                >  1:923882‑M2/1‑79 (MQ=255)

             ttATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAATATATTGtgtcacaaaaata                                                                               <  1:2775141‑M2/91‑14 (MQ=255)

              tataAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAATATATTGtgtcacaaaaataa                                                                              <  1:1335756‑M2/91‑15 (MQ=255)

              tataAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAATATATTGtgtcacaaaaataa                                                                              <  1:568265‑M2/91‑15 (MQ=255)

              tataAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTATCACAAAAATAAGACAAACGCAATATATTGtgtcacaaaaataa                                                                              <  1:3287101‑M2/91‑15 (MQ=255)

                taataaAGTACTGTGTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGAGAAACGCAATATATTGtgtcacaaaaataaga                                                                            >  1:3742292‑M2/1‑75 (MQ=255)

                taAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAATATATTGtgtcacaaaaataaga                                                                            <  1:294768‑M2/91‑17 (MQ=255)

                 aaaaaaGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAATATATTGtgtcacaaaaataagac                                                                           <  1:3897915‑M2/91‑18 (MQ=255)

                   aaaaGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAATATATTGtgtcacaaaaataagacag                                                                         >  1:1602153‑M2/1‑72 (MQ=255)

                     aaGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAATATATTGtgtcacaaaaataagacagta                                                                       >  1:2977011‑M2/1‑70 (MQ=255)

                      aGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAATATATTGtgtcacaaaaataagacagtac                                                                      >  1:2044437‑M2/1‑69 (MQ=255)

                      aGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAATATATTGtgtcacaaaaataagacagtac                                                                      >  1:1187708‑M2/1‑69 (MQ=255)

                      aGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAATATATTGtgtcacaaaaataagacagtac                                                                      <  1:1496761‑M2/91‑23 (MQ=255)

                       GTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAATATATTGTGTCACAAAAATAAGACAGTACa                                                                     >  1:211871‑M1/1‑91 (MQ=255)

                        TACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAATATATTGTGTCACAAAAATAAGACAGTACAg                                                                    >  1:4127540‑M1/1‑91 (MQ=255)

                        TACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAATATATTGTGTCACAAAAATAAGACAGTACAg                                                                    >  1:493679‑M1/1‑91 (MQ=255)

                         ACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAATATATTGTGTCACAAAAATAAGACAGTACAGc                                                                   <  1:1262823‑M1/91‑1 (MQ=255)

                          CTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAATATATTGTGTCACAAAAATAAGACAGTACAGCt                                                                  >  1:3049105‑M1/1‑91 (MQ=255)

                          CTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAATATATTGTGTCACAAAAATAAGACAGTACAGCt                                                                  <  1:2546947‑M1/91‑1 (MQ=255)

                           TGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAATATATTGTGTCACAAAAATAAGACAGTACAGCtt                                                                 <  1:258644‑M1/91‑1 (MQ=255)

                              CTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAATATATTGTGTCACAAAAATAAGACAGTACAGCTTTGt                                                              >  1:1927264‑M1/1‑91 (MQ=255)

                              CTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAATATATTGTGTCACAAAAATAAGACAGTACAGCTTTGt                                                              <  1:885525‑M1/91‑1 (MQ=255)

                              CTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAATATATTGTGTCACAAAAATAAGACAGTACAGCTTTGt                                                              <  1:1410580‑M1/91‑1 (MQ=255)

                                TATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAATATATTGTGTCACAAAAATAAGACAGTACAGCTTTGTAt                                                            <  1:3777979‑M1/91‑1 (MQ=255)

                                  TTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAATATATTGTGTCACAAAAATAAGACAGTACAGCTTTGTATGa                                                          >  1:3434273‑M1/1‑91 (MQ=255)

                                   TTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAATATATTGTGTCACAAAAATAAGACAGTACAGCTTTGTATGat                                                         >  1:1119166‑M1/1‑91 (MQ=255)

                                   TTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAATATATTGTGTCACAAAAATAAGACAGTACAGCTTTGTATGat                                                         >  1:2915611‑M1/1‑91 (MQ=255)

                                    TTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAATATATTGTGTCACAAAAATAAGACAGTACAGCTTTGTATGata                                                        >  1:1568408‑M1/1‑91 (MQ=255)

                                    TTTGTGACAAATGCTGTATGTAGCGTCACAAAAATAAGACAAACGCAATATATTGTGTCACAAAAATAAGACAGTACAGCTTTGTATGata                                                        <  1:1891748‑M1/91‑1 (MQ=255)

                                      TGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAATATATTGTGTCACAAAAATAAGACAGTACAGCTTTGTATGATATc                                                      <  1:3193215‑M1/91‑1 (MQ=255)

                                      TGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAATATATTGTGTCACAAAAATAAGACAGTACAGCTTTGTATGATATc                                                      <  1:2737102‑M1/91‑1 (MQ=255)

                                       GTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAATATATTGTGTCACAAAAATAAGACAGTACAGCTTTGTATGATATCa                                                     >  1:2878829‑M1/1‑91 (MQ=255)

                                         GACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAATATATTGTGTCACAAAAATAAGACAGTACAGCTTTGTATGATATCACt                                                   >  1:2472180‑M1/1‑91 (MQ=255)

                                          ACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAATATATTGTGTCACAAAAATAAGACAGTACAGCTTTGTATGATATCACtt                                                  >  1:347203‑M1/1‑91 (MQ=255)

                                           CAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAATATATTGTGTCACAAAAATAAGACAGTACAGCTTTGTATGATATCACttt                                                 >  1:3123619‑M1/1‑91 (MQ=255)

                                              aTGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAATATATTGTGTCACAAAAATAAGACAGTACAGCTTTGTATGATATCACTTTaaa                                              <  1:607210/91‑1 (MQ=255)

                                                 cTGTATGTAGTGTCACAAAAATAAGACAAACGCAATATATTGTGTCACAAAAATAAGACAGTACAGCTTTGTATGATATCACTCTAAAATa                                           >  1:2084724/1‑91 (MQ=255)

                                                  tgtatgtaGTGTCACAAAAATAAGACAAACGCAATATATTGTGTCACAAAAATAAGACAGTACAGCTTTGTATGATATCACTTTAAAATAc                                          >  1:2429459/1‑91 (MQ=255)

                                                   gtatgtaGTGTCACAAAAATAAGACAAACGCAATATATTGTGTCACAAAAATAAGACAGTACAGCTTTGTATGATATCACTTTAAAATAcc                                         >  1:45743/1‑91 (MQ=255)

                                                   gtatgtaGTGTCACAAAAATAAGACAAACGCAATATATTGTGTCACAAAAATAAGACAGTACAGCTTTGTATGATATCACTTTAAAATAcc                                         <  1:3085838/91‑1 (MQ=255)

                                                   gtatgtaGTGTCACAAAAATAAGACAAACGCAATATAATGTGTCACAAAAATAAGACAGTACAGCTTTGTATGATATCACTTTAAAATAcc                                         >  1:3508678/1‑91 (MQ=255)

                                                     atgtaGTGTCACAAAAATAAGACAAACGCAATATATTGTGTCACAAAAATAAGACAGTACAGCTTTGTATGATATCACTTTAAAATACCtt                                       <  1:1785896/91‑1 (MQ=255)

                                                     atgtaGTGTCACAAAAATAAGACAAACGCAATATATTGTGTCACAAAAATAAGACAGTACAGCTTTGTATGATATCACTTTAAAATACCtt                                       >  1:42734/1‑91 (MQ=255)

                                                     atgtaGTGTCACAAAAATAAGACAAACGCAATATATTGTGTCACAAAAATAAGACAGTACAGCTTTGTATGATATCACTTTAAAATACCtt                                       <  1:1819342/91‑1 (MQ=255)

                                                      tgtaGTGTCACAAAAATAAGACAAACGCAATATATTGTGTCACAAAAATAAGACAGTACAGCTTTGTATGATATCACTTTAAAATACCTTa                                      >  1:332267/1‑91 (MQ=255)

                                                          gtgtCACAAAAATAAGACAAACGCAATATATTGTGTCACAAAAATAAGACAGTACAGCTTTGTATGATATCACTTTAAAATACCTTAAAAc                                  >  1:1300807/1‑91 (MQ=255)

                                                           tgtcacaaaaataagacaAACGCAATATATTGTGTCACAAAAATAAGACAGTACAGCTTTGTATGATATCACTTTAAAATACCTTAAAAcc                                 >  1:846650‑M2/19‑91 (MQ=255)

                                                           tgtcacaaaaataagacaAACGCAATATATTGTGTCACAAAAATAAGACAGTACAGCTTTGTATGATATCACTTTAAAATACCTTAAAAcc                                 <  1:3626959‑M2/73‑1 (MQ=255)

                                                            gtcacaaaaataagacaAACGCAATATATTGTGTCACAAAAATAAGACAGTACAGCTTTGTATGATATCACTTTAAAATACCTTAAAAccc                                <  1:2511635‑M2/74‑1 (MQ=255)

                                                             tcacaaaaataagacaAACGCAATATATTGTGTCACAAAAATAAGACAGTACAGCTTTGTATGATATCACTTTAAAATACCTTAAAAcccc                               <  1:4053465‑M2/75‑1 (MQ=255)

                                                              cacaaaaataagacaAACGCAATATATTGTGTCACAAAAATAAGACAGTACAGCTTTGTATGATATCACTTTAAAATACCTTAAAACCCCt                              <  1:807182‑M2/76‑1 (MQ=255)

                                                                caaaaataagacaAACGCAATATATTGTGTCACAAAAATAAGACAGTACAGCTTTGTATGATATCACTTTAAAATACCTTATAACCCCTgg                            >  1:3975548‑M2/14‑91 (MQ=255)

                                                                    aataagacaAACGCAATATATTGTGTCACAAAAATAAGAGAGTACAGCTTTGTGTGATATCACTTTAAAATACCTTAAAACCCCTGGAAtt                        <  1:3857979‑M2/82‑1 (MQ=255)

                                                                    aataagacaAACGCAATATATTGTGTCACAAAAATAAGACAGTACAGCTTTGTATGATATCACTTTAAAATACCTTAAAACCCCTGGAAtt                        >  1:3157969‑M2/10‑91 (MQ=255)

                                                                      tAAGACAAACGCAATATATTGTGTCACAAAAATAAGACAGTACAGCTTTGTATGATATCACTTTAAAATACCTTAAAACCCCTGGAATTTC                      <  1:1457655‑M1/91‑1 (MQ=255)

                                                                      tAAGACAAACGCAATATATTGTGTCACAAAAATAAGACAGTACAGCTTTGTATGATATCACTTTAAAATACCTTAAAACCCCTGGAATTTC                      <  1:1672827‑M1/91‑1 (MQ=255)

                                                                       aaGACAAACGCAATATATTGTGTCACAAAAATAAGACAGTACAGCTTTGTATGATATCACTTTAAAATACCTTAAAACCCCTGGAATTTCT                     <  1:3817517‑M1/91‑1 (MQ=255)

                                                                        aGACAAACGCAATATATTGTGTCACAAAAATAAGACAGTACAGCTTTGTATGATATCACTTTAAAATACCTTAAAACCCCTGGAATTTCTG                    <  1:1640254‑M1/91‑1 (MQ=255)

                                                                        aGACAAACGCAATATATTGTGTCACAAAAATAAGACAGTACAGCTTTGTATGATATCACTTTAAAATACCTTAAAACCCCTGGAATTTCTG                    >  1:647752‑M1/1‑91 (MQ=255)

                                                                        aGACAAACGCAATATATTGTGTCACAAAAATAAGACAGTACAGCTTTGTATGATATCACTTTAAAATACCTTAAAACCCCTGGAATTTCTG                    <  1:763497‑M1/91‑1 (MQ=255)

                                                                        aGACAAACGCAATATATTGTGTCACAAAAATAAGACAGTACAGCTTTGTATGATATCACTTTAAAATACCTTAAAACCCCTGGAATTTCTG                    >  1:1530174‑M1/1‑91 (MQ=255)

                                                                           caAACGCAATATATTGTGTCACAAAAATAAGACCGTACAGCTTTGTATGATATCACTTTAAAATACCTTAAAACCCCTGGAATTTCTGGCt                 <  1:3399169‑M2/89‑1 (MQ=255)

                                                                           caAACGCAATATATTGTGTCACAAAAATAAGACAGTACAGCTTTGTATGATATCACTTTAAAATACCTTAAAACCCCTGGAATTTCTGGCt                 <  1:3940081‑M2/89‑1 (MQ=255)

                                                                           caAACGCAATATATTGTGTCACAAAAATAAGACAGTACAGCTTTGTATGATATCACTTTAAAATACCTTAAAACCCCTGGAATTTCTGGCt                 <  1:2275902‑M2/89‑1 (MQ=255)

                                                                            aaaCGCAATATATTGTGTCACAAAAATAAGACAGTACAGCTTTGTATGATATCACTTTAAAATACCTTAAAACCCCTGGAATTTCTGGCaa                <  1:4011917‑M1/91‑3 (MQ=255)

                                                                            aaaCGCAATATATTGTGTCACAAAAATAAGACAGTACAGCTTTGTATGATATCACTTTAAAATACCTTAAAACCCCTGGAATTTCTGGCaa                <  1:2622716‑M1/91‑3 (MQ=255)

                                                                            aAACGCAATATATTGTGTCACAAAAATAAGACAGTACAGCTTTGTATGATATCACTTTAAAATACCTTAAAACCCCTGGAATTTCTGGCtt                >  1:530926‑M2/2‑91 (MQ=255)

                                                                                  aaTATATTGTGTCACAAAAATAAGACAGTACAGCTTTGTATGATATCACTTTAAAATACCTTAAAACCCCTGGAATTTCTGGCaaagccag          <  1:325792‑M1/91‑9 (MQ=255)

                                                                                  aaTATATTGTGTCACAAAAATAAGACAGTACAGCTTTGTATGATATCACTTTAAAATACCTTAAAACCCCTGGAATTTCTGGCTTTgccag          >  1:3012686‑M2/1‑86 (MQ=255)

                                                                                   atatatTGTGTCACAAAAATAAGACAGTACAGCTTTGTATGATATCACTTTAAAATACCTTAAAACCCCTGGAATTTCTGGCaaagccaga         <  1:2845983‑M1/91‑10 (MQ=255)

                                                                                   atatatTGTGTCACAAAAATAAGACAGTACAGCTTTGTATGATATCACTTTAAAATACCTTAAAACCCCTGGAATTTCTGGCTTTgccaga         <  1:2699108‑M2/91‑7 (MQ=255)

                                                                                   atatatTGTGTCACAAAAATAAGACAGTACAGCTTTGTATGATATCACTTTAAAATACCTTAAAACCCCTGGAATTTCTGGCTTTgccaga         <  1:1080213‑M2/91‑7 (MQ=255)

                                                                                   atatatTGTGTCACAAAAATAAGACAGTACAGCTTTGTATGATATCACTTTAAAATACCTTAAAACCCCTGGAATTTCTGGCTTTgccaga         <  1:224110‑M2/91‑7 (MQ=255)

                                                                                     atatTGTGTCACAAAAATAAGACAGTACAGCTTTGTATGATATCACTTTAAAATACCTTAAAACCCCTGGAATTTCTGGCTTTGCCAGACC       >  1:3708168‑M1/1‑91 (MQ=255)

                                                                                      tatTGTGTCACAAAAATAAGACAGTACAGCTTTGTATGATATCACTTTAAAATACCTTAAAACCCCTGGAATTTCTGGCTTTGCCAGACCT      <  1:2009678‑M1/91‑1 (MQ=255)

                                                                                       atTGTGTCACAAAAATAAGACAGTACAGCTTTGTATGATATCACTTTAAAATACCTTAAAACCCCTGGAATTTCTGGCTTTGCCAGACCTA     >  1:1039850‑M1/1‑91 (MQ=255)

                                                                                         tgtgTCACAAAAATAAGACAGTACAGCTTTGTATGATATCACTTTAAAATACCTTAAAACCCCTGGAATTTCTGGCTTTGCCAGACCTATC   <  1:3667120‑M1/91‑1 (MQ=255)

                                                                                         tgtgTCACAAAAATAAGACAGTACAGCTTTGTATGATATCACTTTAAAATACCTTAAAACCCCTGGAATTTCTGGCTTTGCCAGACCTATC   <  1:2206429‑M1/91‑1 (MQ=255)

                                                                                          gtgtCACAAAAATAAGACAGTACAGCTTTGTATGATATCACTTTAAAATACCTTAAAACCCCTGGAATTTCTGGCTTTGCCAGACCTATCA  <  1:3361326‑M1/91‑1 (MQ=255)

                                                                                          gtgtCACAAAAATAAGACAGTACAGCTTTGTATGATATCACTTTAAAATACCTTAAAACCCCTGGAATTTCTGGCTTTGCCAGACCTATCA  <  1:2388081‑M1/91‑1 (MQ=255)

                                                                                          gtgtCACAAAAATAAGACAGTACAGCTTTGTATGATATCACTTTAAAATACCTTAAAACCCCTGGAATTTCTGGCTTTGCCAGACCTATCA  <  1:2352733‑M1/91‑1 (MQ=255)

                                                                                          gtgtCACAAAAATAAGACAGTACAGCTTTGTATGATATCACTTTAAAATACCTTAAAACCCCTGGAATTTCTGGCTTTGCCAGACCTATCA  >  1:965219‑M1/1‑91 (MQ=255)

TTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAATATATTGTGTCACAAAAATAAGACAGTACAGCTTTGTATGATATCACTTTAAAATACCTTAAAACCCCTGGAATTTCTGGCTTTGCCAGACCTATCA  >  NC_012417/1013‑1193

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.