| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | USA300TCH1516_ALE | 770,870 | T→A | 9.1% | intergenic (+56/‑194) | ybaK → / → glcR | Cys‑tRNA(Pro)/Cys‑tRNA(Cys) deacylase YbaK/HTH‑type transcriptional repressor GlcR |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | USA300TCH1516_ALE | 770,870 | 0 | T | A | 9.1% | 371.3 / 23.1 | 110 | intergenic (+56/‑194) | ybaK/glcR | Cys‑tRNA(Pro)/Cys‑tRNA(Cys) deacylase YbaK/HTH‑type transcriptional repressor GlcR |
| Reads supporting (aligned to +/- strand): ref base T (56/44); new base A (3/7); total (59/51) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.83e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.84e-01 | |||||||||||
Only 100 of 116 total aligned reads displayed.
CTAAAGGCAAAATTGGAGCAGTTATCCATGAATGATTAATAACAACAAAAAGTATGGGGCAAGATTAGGAGTGTGACAGAGATGAAATTTTTATAAAA‑‑TTCATTTCTGCCACACTCCTTTTTGATTGAATTAGCATTTTACGATCATAAACAGTCATTATAATTGAGTATTTGAACATA > USA300TCH1516_ALE/770780‑770958 | cTAAAGGCAAAATTGGAGCAGTTATCCATGAATGATTAATAACAACAAAAAGTATGGGGCAAGATTAGGAGTGTGACAGAGATGAAAtttt > 1:1678237/1‑91 (MQ=255) tAAAGGCAAAATTGGAGCAGTTATCCATGAATGATTAATAACAACAAAAAGTATGGGGCAAGATTAGGAGTGTGACAGAGATGAAAttttt > 1:1043052/1‑91 (MQ=255) aaaGGCAAAATTGGAGCAGTTATCCATGAATGATTAATAACAACAAAAAGTATGGGGCAAGATTAGGAGTGTGACAGAGATGAAATTTTta > 1:1053117/1‑91 (MQ=255) aaaGGCAAAATTGGAGCAGTTATCCATGAATGATTAATAACAACAAAAAGTATGGGGCAAGATTAGGAGTGTGACAGAGATGAAATTTTta > 1:1053133/1‑91 (MQ=255) aaGGCAAAATTGGAGCAGTTATCCATGAATGATTAATAACAACAAAAAGTATGGGGCAAGATTAGGAGTGTGACAGAGATGAAATTTTtat > 1:2768853/1‑91 (MQ=255) cAAAATTGGAGCAGTTATCCATGAATGATTAATAACAACAAAAAGTATGGGGCAAGATTAGGAGTGTGACAGAGATGAAATTTTTATaaaa < 1:2715617/91‑1 (MQ=255) aaaaTTGGAGCAGTTATCCATGAATGATTAATAACAACAAAAAGTATGGGGCAAGATTAGGGGTGTGACAGAGATGAAATTTTTATAAAA‑‑t > 1:2346438/1‑91 (MQ=255) aaaaTTGGAGCAGTTATCCATGAATGATTAATAACAACAAAAAGTATGGGGCAAGATTAGGAGTGTGACAGAGATGAAATTTTTATAAAA‑‑t < 1:2874804/91‑1 (MQ=255) aaaaTTGGAGCAGTTATCCATGAATGATTAATAACAACAAAAAGTATGGGGCAAGATTAGGAGTGTGACAGAGATGAAATTTTTATAAAA‑‑t > 1:2722207/1‑91 (MQ=255) aaaaTTGGAGCAGTTATCCATGAATGATTAATAACAACAAAAAGTATGGGGCAAGATTAGGAGTGTGACAGAGATGAAATTTTTATAAAA‑‑t > 1:2721877/1‑91 (MQ=255) aaaTTGGAGCAGTTATCCATGAATGATTAATAACAACAAAAAGTATGGGGCAAGATTAGGAGTGTGACAGAGATGAAATTTTTATAAAA‑‑tt > 1:3750028/1‑91 (MQ=255) aaaTTGGAGCAGTTATCCATGAATGATTAATAACAACAAAAAGTATGGGGCAAGATTAGGAGTGTGACAGAGATGAAATTTTTATAAAA‑‑tt > 1:2059504/1‑91 (MQ=255) aaaTTGGAGCAGTTATCCATGAATGATTAATAACAACAAAAAGTATGGGGCAAGATTAGGAGTGTGACAGAAATGAATTTTATA‑AAAA‑‑ttt < 1:579528/91‑2 (MQ=37) aaTTGGAGCAGTTATCCATGAATGATTAATAACAACAAAAAGTATGGGGCAAGATTAGGAGTGTGACAGAGATGAAATTTTTATAAAA‑‑TTc < 1:1010887/91‑1 (MQ=255) aaTTGGAGCAGTTATCCATGAATGATTAATAACAACAAAAAGTATGGGGCAAGATTAGGAGTGTGACAGAGATGAAATTTTTATAAAA‑‑TTc > 1:550457/1‑91 (MQ=255) aaTTGGAGCAGTTATCCATGAATGATTAATAACAACAAAAAGTATGGGGCAAGATTAGGAGTGTGACAGAGATGAAATTTTTATAAAA‑‑TTc < 1:3084588/91‑1 (MQ=255) aTTGGAGCAGTTATCCATGAATGATTAATAACAACAAAAAGTATGGGGCAAGATTAGGAGTGTGACAGAGATGAAATTTTTATAAAA‑‑TTCa < 1:1926359/91‑1 (MQ=255) ttGGAGCAGTTATCCATGAATGATTAATAACAACAAAAAGTATGGGGCAAGATTAGGAGTGTGACAGAGATGAAATTTTTATAAAA‑‑TTCAt < 1:485071/91‑1 (MQ=255) gAGCAGTTATCCATGAATGATTAATAACAACAAAAAGTATGGGGCAAGATTAGGAGTGTGACAGAGATGAAATTTTTATAAAA‑‑TTCATTTc > 1:121657/1‑91 (MQ=255) gAGCAGTTATCCATGAATGATTAATAACAACAAAAAGTATGGGGCAAGATTAGGAGTGTGACAGAGATGAAATTTTTATAAAA‑‑TTCATTTc > 1:930279/1‑91 (MQ=255) gCAGTTATCCATGAATGATTAATAACAACAAAAAGTATGGGGCAAGATTAGGAGTGTGACAGAGATGAAATTTTTATAAAA‑‑TTCATTTCTg > 1:3197752/1‑91 (MQ=255) gCAGTTATCCATGAATGATTAATAACAACAAAAAGTATGGGGCAAGATTAGGAGTGTGACAGAGATGAAATTTTTATAAAA‑‑TTCATTTCTg > 1:1993397/1‑91 (MQ=255) cAGTTATCCATGAATGATTAATAACAACAAAAAGTATGGGGCAAGATTAGGAGTGTGACAGAGATGAAATTTTTATAAAA‑‑TTCATTTCTGc > 1:2112570/1‑91 (MQ=255) aGTTATCCATGAATGATTAATAACAACAAAAAGTATGGGGCAAGATTAGGAGTGTGGCAGAAATGAATTTTATAAAAAT‑‑TTCATCTCTgtc < 1:2886246/91‑3 (MQ=17) gTTATCCATGAATGATTAATAACAACAAAAAGTATGGGGCAAGATTAGGAGTGTGGCAGAAATGAATTTTATAAAAAT‑‑TTCATCTCTgtca < 1:3099755/91‑4 (MQ=17) gTTATCCATGAATGATTAATAACAACAAAAAGTATGGGGCAAGATTAGGAGTGTGACAGAGATGAAATTTTTATAAAA‑‑TTCATTTCTGCca < 1:934096/91‑1 (MQ=255) ttATCCATGAATGATTAATAACAACAAAAAGTATGGGGCAAGATTAGGAGTGTGACAGAGATGAAATTTTTATAAAA‑‑TTCATTTCTGCcac < 1:378467/91‑1 (MQ=255) tATCCATGAATGATTAATAACAACAAAAAGTATGGGGCAAGATTAGGAGTGTGGCAGAAATGAATTTTATAAAAAT‑‑TTCATCTCTGTcaca < 1:1753057/91‑1 (MQ=14) aTCCATGAATGATTAATAACAACAAAAAGTATGGGGCAAGATTAGGAGTGTGACAGAGATGAAATTTTTATAAAA‑‑TTCATTTCTGCCacac > 1:1133654/1‑91 (MQ=255) aTCCATGAATGATTAATAACAACAAAAAGTATGGGGCAAGATTAGGAGTGTGACAGAGATGAAATTTTTATAAAA‑‑TTCATTTCTGCCacac > 1:2232223/1‑91 (MQ=255) ccATGAATGATTAATAACAACAAAAAGTATGGGGCAAGATTAGGAGTGTGACAGAGATGAAATTTTTATAAAA‑‑TTCATTTCTGCCACACTc < 1:3239499/91‑1 (MQ=255) cATGAATGATTAATAACAACAAAAAGTATGGGGCAAGATTAGGAGTGTGGCAGAAATGAATTTTATAAAAAT‑‑TTCATCTCTGTCACACTcc < 1:497038/91‑1 (MQ=14) cATGAATGATTAATAACAACAAAAAGTATGGGGCAAGATTAGGAGTGTGACAGAGATGAAATTTTTATAAAA‑‑TTCATTTCTGCCACACTcc < 1:4104396/91‑1 (MQ=255) tgaatgaTTAATAACAACAAAAAGTATGGGGCAAGATTAGGAGTGTGACAGAGATGAAATTTTTATAAAA‑‑TTCATTTCTGCCACACTCCtt < 1:2934184/91‑1 (MQ=255) gaatgaTTAATAACAACAAAAAGTATGGGGCAAGATTAGGAGTGTGACAGAGATGAAATTTTTATAAAA‑‑TTCATTTCTGCCACACTCCttt < 1:4027861/91‑1 (MQ=255) aatgaTTAATAACAACAAAAAGTATGGGGCAAGATTAGGAGTGTGGCAGAGATGAAATTTTTATAAAA‑‑TTCATTTCTGCCACACTCCtttt > 1:2332863/1‑91 (MQ=255) aatgaTTAATAACAACAAAAAGTATGGGGCAAGATTAGGAGTGTGGCAGAAATGAATTTTATAAAAAT‑‑TTCATCTCTGTCACACTCCtaat < 1:2582593/91‑4 (MQ=2) aatgaTTAATAACAACAAAAAGTATGGGGCAAGATTAGGAGTGTGACAGAGATGAAATTTTTATAAAA‑‑TTCATTTCTGCCACACTCCtttt > 1:243119/1‑91 (MQ=255) aatgaTTAATAACAACAAAAAGTATGGGGCAAGATTAGGAGTGTGACAGAGATGAAATTTTTATAAAA‑‑TTCATTTCTGCCACACTCCtttt > 1:1852017/1‑91 (MQ=255) aatgaTTAATAACAACAAAAAGTATGGGGCAAGATTAGGAGTGTGACAGAGATGAAATTTTTATAAAA‑‑TTCATTTCTGCCACACTCCtttt > 1:1852143/1‑91 (MQ=255) aatgaTTAATAACAACAAAAAGTATGGGGCAAGATTAGGAGTGTGACAGAGATGAAATTTTTATAAAA‑‑TTCATTTCTGCCACACTCCtttt < 1:3189800/91‑1 (MQ=255) gaTTAATAACAACAAAAAGTATGGGGCAAGATTAGGAGTGTGACAGAGATGAAATTTTTATAAAA‑‑TTCATTTCTGCCACACTCCTTTttga > 1:3818351/1‑91 (MQ=255) gaTTAATAACAACAAAAAGTATGGGGCAAGATTAGGAGTGTGACAGAGATGAAATTTTTATAAAA‑‑TTCATTTCTGCCACACTCCTTTttga < 1:1640639/91‑1 (MQ=255) aTTAATAACAACAAAAAGTATGGGGCAAGATTAGGAGTGTGACAGAGATGAAATTTTTATAAAA‑‑TTCATTTCTGCCACACTCCTTTttgat > 1:2520084/1‑91 (MQ=255) aTTAATAACAACAAAAAGTATGGGGCAAGATTAGGAGTGTGACAGAGATGAAATTTTTATAAAA‑‑TTCATTTCTGCCACACTCCTTTttgat < 1:1399048/91‑1 (MQ=255) aTTAATAACAACAAAAAGTATGGGGCAAGATTAGGAGTGTGACAGAGATGAAATTTTTATAAAA‑‑TTCATTTCTGCCACACTCCTTTttgat > 1:3571537/1‑91 (MQ=255) aataaCAACAAAAAGTATGGGGCAAGATTAGGAGTGTGACAGAGATGAAATTTTTATAAAA‑‑TTCATTTCTGCCACACTCCTTTttgattga > 1:1018175/1‑91 (MQ=255) ataaCAACAAAAAGTATGGGGCAAGATTAGGAGTGTGACAGAGATGAAATTTTTATAAAA‑‑TTCATTTCTGCCACACTCCTTTTTGATTGaa > 1:3935935/1‑91 (MQ=255) ataaCAACAAAAAGTATGGGGCAAGATTAGGAGTGTGACAGAGATGAAATTTTTATAAAA‑‑TTCATTTCTGCCACACTCCTTTTTGATTGaa > 1:1970447/1‑91 (MQ=255) taaCAACAAAAAGTATGGGGCAAGATTAGGAGTGTGACAGAGATGAAATTTTTATAAAA‑‑TTCATTTCTGCCACACTCCTTTTTGATTGAAt < 1:3411534/91‑1 (MQ=255) aacaacAAAAAGTATGGGGCAAGATTAGGAGTGTGACAGAGATGAAATTTTTATAAAA‑‑TTCATTTCTGCCACACTCCTTTTTGATTGAAtt < 1:337186/91‑1 (MQ=255) aacaacAAAAAGTATGGGGCAAGATTAGGAGTGTGACAGAGATGAAATTTTTATAAAA‑‑TTCATTTCTGCCACACTCCTTTTTGATTGAAtt < 1:336878/91‑1 (MQ=255) aacaacAAAAAGTATGGGGCAAGATTAGGAGTGTGACAGAGATGAAATTTTTATAAAA‑‑TTCATTTCTGCCACACTCCTTTTTGATTGAAtt < 1:3112305/91‑1 (MQ=255) acaacaAAAAGTATGGGGCAAGATTAGGAGTGTGACAGAGATGAAATTTTTATAAAA‑‑TTCATTTCTGCCACACTCCTTTTTGATTGAATTa > 1:496747/1‑91 (MQ=255) acaacaAAAAGTATGGGGCAAGATTAGGAGTGTGACAGAGATGAAATTTTTATAAAA‑‑TTCATTTCTGCCACACTCCTTTTTGATTGAATTa > 1:497326/1‑91 (MQ=255) caacaaAAAGTATGGGGCAAGATTAGGAGTGTGACAGAGATGAAATCTTTATAAAA‑‑TTCATTTCTGCCACACTCCTTTTTGATTGAATTAg > 1:3286612/1‑91 (MQ=255) caaAAAGTATGGGGCAAGATTAGGAGTGTGACAGAGATGAAATTTTTATAAAA‑‑TTCATTTCTGCCACACTCCTTTTTGATTGAATTAGCAt > 1:969945/1‑91 (MQ=255) aaaaaGTATGGGGCAAGATTAGGAGTGTGACAGAGATGAAATTTTTATAAAA‑‑TTCATTTCTGCCACACTCCTTTTTGATTGAATTAGCAtt < 1:4020534/91‑1 (MQ=255) aGTATGGGGCAAGATTAGGAGTGTGACAGAGATGAAATTTTTATAAAA‑‑TTCATTTCTGCCACACTCCTTTTTGATTGAATTAGCATTTTAc < 1:3160809/91‑1 (MQ=255) aGTATGGGGCAAGATTAGGAGTGTGACAGAGATGAAATTTTTATAAAA‑‑TTCATTTCTGCCACACTCCTTTTTGATTGAATTAGCATTTTAc < 1:2245523/91‑1 (MQ=255) aGTATGGGGCAAGATTAGGAGTGTGACAGAGATGAAATTTTTATAAAA‑‑TTCATTTCTGCCACACTCCTTTTTGATTGAATTAGCATTTTAc < 1:2246148/91‑1 (MQ=255) gTATGGGGCAAGATTAGGAGTGTGACAGAGATGAAATTTTTATAAAA‑‑TTCATTTCTGCCACACTCCTTTTTGATTGAATTAGCATTTTACg > 1:1273361/1‑91 (MQ=255) aTGGGGCAAGATTAGGAGTGTGACAGAGATGAAATTTTTATAAAA‑‑TTCATTTCTGCCACACTCCTTTTTGATTGAATTAGCATTTTACGAt > 1:2104325/1‑91 (MQ=255) tGGGGCAAGATTAGGAGTGTGACAGAGATGAAATTTTTATAAAA‑‑TTCATTTCTGCCACACTCCTTTTTGATTGAATTAGCATTTTACGATc > 1:1571222/1‑91 (MQ=255) tGGGGCAAGATTAGGAGTGTGACAGAGATGAAATTTTTATAAAA‑‑TTCATTTCTGCCACACTCCTTTTTGATTGAATTAGCATTTTACGATc < 1:2182310/91‑1 (MQ=255) ggggCAAGATTAGGAGTGTGACAGAGATGAAATTTTTATAAAA‑‑TTCATTTCTGCCACACTCCTTTTTGATTGAATTAGCATTTTACGATCa > 1:510250/1‑91 (MQ=255) ggggCAAGATTAGGAGTGTGACAGAGATGAAATTTTTATAAAA‑‑TTCATTTCTGCCACACTCCTTTTTGATTGAATTAGCATTTTACGATCa > 1:2336528/1‑91 (MQ=255) gggCAAGATTAGGAGTGTGACAGAGATGAAATTTTTATAAAA‑‑TTCATTTCTGCCACACTCCTTTTTGATTGAATTAGCATTTTACGATCAt < 1:2166780/91‑1 (MQ=255) ggCAAGATTAGGAGTGTGACAGAGATGAAATTTTTATAAAA‑‑TTCATTTCTGCCACACTCCTTTTTGATTGAATTAGCATTTTACGATCATa > 1:513040/1‑91 (MQ=255) ttACGAGTGCGACAGAGATGAAATTTTTATAAAA‑‑TTCATTTCTGCCACACTCCTTTTTGATTGAATTAGCATTTTACGATCATAAACAGTc < 1:3727446/91‑1 (MQ=255) aGGAGTGTGACAGAGATGAAATTTTTATAAAA‑‑TTCATTTCTGCCACACTCCTTTTTGATTGAATTAGCATTTTACGATCATAAACAGTCAt > 1:2663868/1‑91 (MQ=255) aGGAGTGTGACAGAGATGAAATTTTTATAAAA‑‑TTCATTTCTGCCACACTCCTTTTTGATTGAATTAGCATTTTACGATCATAAACAGTCAt < 1:1999169/91‑1 (MQ=255) aGGAGTGTGACAGAGATGAAATTTTTATAAAA‑‑TTCATTTCTGCCACACTCCTTTTTGATTGAATTAGCATTTTACGATCATAAACAGTCAt < 1:3772122/91‑1 (MQ=255) ggAGTGTGACAGAGATGAAATTTTTATAAAA‑‑TTCATTTCTGCCACACTCCTTTTTGATTGAATTAGCATTTTACGATCATAAACAGTCAtt > 1:1452989/1‑91 (MQ=255) ggAGTGTGACAGAGATGAAATTTTTATAAAA‑‑TTCATTTCTGCCACACTCCTTTTTGATTGAATTAGCATTTTACGATCATAAACAGTCAtt > 1:1139591/1‑91 (MQ=255) ggAGTGTGACAGAGATGAAATTTTTATAAAA‑‑TTCATTTCTGCCACACTCCTTTTTGATTGAATTAGCATTTTACGATCATAAACAGTCAtt > 1:575465/1‑91 (MQ=255) ggAGTGTGACAGAGATGAAATTTTTATAAAA‑‑TTCATTTCTGCCACACTCCTTTTTGATTGAATTAGCATTTTACGATCATAAACAGTCAtt < 1:911528/91‑1 (MQ=255) gAGTGTGACAGAGATGAAATTTTTATAAAA‑‑TTCATTTCTGCCACACTCCTTTTTGATTGAATTAGCATTTTACGATCATAAACAGTCATta < 1:1178726/91‑1 (MQ=255) aGTGTGGCAGAAATGAATTTTATAAAAAT‑‑TTCATCTCTGTCACACTCCTTTTTGATTGAATTAGCATTTTACGATCATAAACAGTCATtat > 1:83481/1‑91 (MQ=14) aGTGTGGCAGAAATGAATTTTATAAAAAT‑‑TTCATCTCTGTCACACTCCTTTTTGATTGAATTAGCATTTTACGATCATAAACAGTCATtat > 1:1802078/1‑91 (MQ=14) gtgtGACAGAGATGAAATTTTTATAAAA‑‑TTCATTTCTGCCACACTCCTTTTTGATTGAATTAGCATTTTACGATCATAAACAGTCATtata > 1:843355/1‑91 (MQ=255) gtgACAGAGATGAAATTTTTATAAAA‑‑TTCATTTCTGCCACACTCCTTTTTGATTGAATTAGCATTTTACGATCATAAACAGTCATTATAAt < 1:3953783/91‑1 (MQ=255) gtgACAGAGATGAAATTTTTATAAAA‑‑TTCATTTCTGCCACACTCCTTTTTGATTGAATTAGCATTTTACGATCATAAACAGTCATTATAAt < 1:4020385/91‑1 (MQ=255) gtgACAGAGATGAAATTTTTATAAAA‑‑TTCATTTCTGCCACACTCCTTTTTGATTGAATTAGCATTTTACGATCATAAACAGTCATTATAAt < 1:4020387/91‑1 (MQ=255) tgACAGAGATGAAATTTTTATAAAA‑‑TTCATTTCTGCCACACTCCTTTTTGATTGAATTAGCATTTTACGATCATAAACAGTCATTATAAtt < 1:3200977/91‑1 (MQ=255) tgACAGAGATGAAATTTTTATAAAA‑‑TTCATTTCTGCCACACTCCTTTTTGATTGAATTAGCATTTTACGATCATAAACAGTCATTATAAtt < 1:3198840/91‑1 (MQ=255) gACAGAGATGAAATTTTTATAAAA‑‑TTCATTTCTGCCACACTCCTTTTTGATTGAATTAGCATTTTACGATCATAAACAGTCATTATAATTg < 1:1381512/91‑1 (MQ=255) gACAGAGATGAAATTTTTATAAAA‑‑TTCATTTCTGCCACACTCCTTTTTGATTGAATTAGCATTTTACGATCATAAACAGTCATTATAATTg < 1:2960081/91‑1 (MQ=255) aCAGAGATGAAATTTTTATAAAA‑‑TTCATTTCTGCCACACTCCTTTTTGATTGAATTAGCATTTTACGATCATAAACAGTCATTATAATTGa < 1:4112789/91‑1 (MQ=255) cAGAGATGAAATTTTTATAAAA‑‑TTCATTTCTGCCACACTCCTTTTTGATTGAATTAGCATTTTACGATCATAAACAGTCATTATAATTGAg > 1:10473/1‑91 (MQ=255) cAGAAATGAATTTTATAAAAAT‑‑TTCATCTCTGTCACACTCCTTTTTGATTGAATTAGCATTTTACGATCATAAACAGTCATTATAATTGAg > 1:3009693/1‑91 (MQ=18) agagATGAAATTTTTATAAAA‑‑TTCATTTCTGCCACACTCCTTTTTGATTGAATTAGCATTTTACGATCATAAACAGTCATTATAATTGAGt > 1:3580204/1‑91 (MQ=255) gaTGAAATTTTTATAAAA‑‑TTCATTTCTGCCACACTCCTTTTTGATTGAATTAGCATTTTACGATCATAAACAGTCATTATAATTGAGTAtt > 1:140868/1‑91 (MQ=255) gaTGAAATTTTTATAAAA‑‑TTCATTTCTGCCACACTCCTTTTTGATTGAATTAGCATTTTACGATCATAAACAGTCATTATAATTGAGTAtt > 1:2184089/1‑91 (MQ=255) gaTGAAATTTTTATAAAA‑‑TTCATTTCTGCCACACTCCTTTTTGATTGAATTAGCATTTTACGATCATAAACAGTCATTATAATTGAGTAtt > 1:2607177/1‑91 (MQ=255) gAAATTTTTATAAAA‑‑TTCATTTCTGCCACACTCCTTTTTGATTGAATTAGCATTTTACGATCATAAACAGTCATTATAATTGAGTATTTGa > 1:2156992/1‑91 (MQ=255) tgaattttATAAAAATTTCATCTCTGTCACACTCCTTTTTGATTGAATTAGCATTTTACGATCATAAACAGTCATTATAATTGAGTATTTg > 1:100679/5‑91 (MQ=21) ttttATAAAA‑‑TTCATTTCTGCCACACTCCTTTTTGATTGAATTAGCATTTTACGATCATAAACAGTCATTATAATTGAGTATTTGAACATa > 1:728943/1‑91 (MQ=255) ttttATAAAA‑‑TTCATTTCTGCCACACTCCTTTTTGATTGAATTAGCATTTTACGATCATAAACAGTCATTATAATTGAGTATTTGAACATa < 1:2246211/91‑1 (MQ=255) ttttATAAAA‑‑TTCATTTCTGCCACACTCCTTTTTGATTGAATTAGCATTTTACGATCATAAACAGTCATTATAATTGAGTATTTGAACATa < 1:3363275/91‑1 (MQ=255) | CTAAAGGCAAAATTGGAGCAGTTATCCATGAATGATTAATAACAACAAAAAGTATGGGGCAAGATTAGGAGTGTGACAGAGATGAAATTTTTATAAAA‑‑TTCATTTCTGCCACACTCCTTTTTGATTGAATTAGCATTTTACGATCATAAACAGTCATTATAATTGAGTATTTGAACATA > USA300TCH1516_ALE/770780‑770958 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |