| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | USA300TCH1516_ALE | 770,877 | A→T | 7.9% | intergenic (+63/‑187) | ybaK → / → glcR | Cys‑tRNA(Pro)/Cys‑tRNA(Cys) deacylase YbaK/HTH‑type transcriptional repressor GlcR |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | USA300TCH1516_ALE | 770,877 | 0 | A | T | 7.9% | 389.6 / 19.5 | 114 | intergenic (+63/‑187) | ybaK/glcR | Cys‑tRNA(Pro)/Cys‑tRNA(Cys) deacylase YbaK/HTH‑type transcriptional repressor GlcR |
| Reads supporting (aligned to +/- strand): ref base A (59/46); new base T (3/6); total (62/52) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 2.96e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.47e-01 | |||||||||||
Only 100 of 116 total aligned reads displayed.
CAAAATTGGAGCAGTTATCCATGAATGATTAATAACAACAAAAAGTATGGGGCAAGATTAGGAGTGTGACAGAGATGAAATTTTTATAAAA‑‑TTCATTTCTGCCACACTCCTTTTTGATTGAATTAGCATTTTACGATCATAAACAGTCATTATAATTGAGTATTTGAACATAAAAATGT > USA300TCH1516_ALE/770787‑770965 | aaaaTTGGAGCAGTTATCCATGAATGATTAATAACAACAAAAAGTATGGGGCAAGATTAGGGGTGTGACAGAGATGAAATTTTTATAAAA‑‑t > 1:2346438/1‑91 (MQ=255) aaaaTTGGAGCAGTTATCCATGAATGATTAATAACAACAAAAAGTATGGGGCAAGATTAGGAGTGTGACAGAGATGAAATTTTTATAAAA‑‑t < 1:2874804/91‑1 (MQ=255) aaaaTTGGAGCAGTTATCCATGAATGATTAATAACAACAAAAAGTATGGGGCAAGATTAGGAGTGTGACAGAGATGAAATTTTTATAAAA‑‑t < 1:2874325/91‑1 (MQ=255) aaaaTTGGAGCAGTTATCCATGAATGATTAATAACAACAAAAAGTATGGGGCAAGATTAGGAGTGTGACAGAGATGAAATTTTTATAAAA‑‑t > 1:2722207/1‑91 (MQ=255) aaaaTTGGAGCAGTTATCCATGAATGATTAATAACAACAAAAAGTATGGGGCAAGATTAGGAGTGTGACAGAGATGAAATTTTTATAAAA‑‑t > 1:2721877/1‑91 (MQ=255) aaaTTGGAGCAGTTATCCATGAATGATTAATAACAACAAAAAGTATGGGGCAAGATTAGGAGTGTGACAGAGATGAAATTTTTATAAAA‑‑tt > 1:2059504/1‑91 (MQ=255) aaaTTGGAGCAGTTATCCATGAATGATTAATAACAACAAAAAGTATGGGGCAAGATTAGGAGTGTGACAGAGATGAAATTTTTATAAAA‑‑tt > 1:3750028/1‑91 (MQ=255) aaaTTGGAGCAGTTATCCATGAATGATTAATAACAACAAAAAGTATGGGGCAAGATTAGGAGTGTGACAGAAATGAATTTTATA‑AAAA‑‑ttt < 1:579528/91‑2 (MQ=37) aaTTGGAGCAGTTATCCATGAATGATTAATAACAACAAAAAGTATGGGGCAAGATTAGGAGTGTGACAGAGATGAAATTTTTATAAAA‑‑TTc < 1:1010887/91‑1 (MQ=255) aaTTGGAGCAGTTATCCATGAATGATTAATAACAACAAAAAGTATGGGGCAAGATTAGGAGTGTGACAGAGATGAAATTTTTATAAAA‑‑TTc < 1:3084588/91‑1 (MQ=255) aaTTGGAGCAGTTATCCATGAATGATTAATAACAACAAAAAGTATGGGGCAAGATTAGGAGTGTGACAGAGATGAAATTTTTATAAAA‑‑TTc > 1:550457/1‑91 (MQ=255) aTTGGAGCAGTTATCCATGAATGATTAATAACAACAAAAAGTATGGGGCAAGATTAGGAGTGTGACAGAGATGAAATTTTTATAAAA‑‑TTCa < 1:3431038/91‑1 (MQ=255) aTTGGAGCAGTTATCCATGAATGATTAATAACAACAAAAAGTATGGGGCAAGATTAGGAGTGTGACAGAGATGAAATTTTTATAAAA‑‑TTCa < 1:1926359/91‑1 (MQ=255) ttGGAGCAGTTATCCATGAATGATTAATAACAACAAAAAGTATGGGGCAAGATTAGGAGTGTGACAGAGATGAAATTTTTATAAAA‑‑TTCAt < 1:485071/91‑1 (MQ=255) gAGCAGTTATCCATGAATGATTAATAACAACAAAAAGTATGGGGCAAGATTAGGAGTGTGACAGAGATGAAATTTTTATAAAA‑‑TTCATTTc > 1:930279/1‑91 (MQ=255) gCAGTTATCCATGAATGATTAATAACAACAAAAAGTATGGGGCAAGATTAGGAGTGTGACAGAGATGAAATTTTTATAAAA‑‑TTCATTTCTg > 1:3197752/1‑91 (MQ=255) gCAGTTATCCATGAATGATTAATAACAACAAAAAGTATGGGGCAAGATTAGGAGTGTGACAGAGATGAAATTTTTATAAAA‑‑TTCATTTCTg > 1:1993397/1‑91 (MQ=255) cAGTTATCCATGAATGATTAATAACAACAAAAAGTATGGGGCAAGATTAGGAGTGTGACAGAGATGAAATTTTTATAAAA‑‑TTCATTTCTGc > 1:2112570/1‑91 (MQ=255) aGTTATCCATGAATGATTAATAACAACAAAAAGTATGGGGCAAGATTAGGAGTGTGGCAGAAATGAATTTTATAAAAAT‑‑TTCATCTCTgtc < 1:2886246/91‑3 (MQ=17) gTTATCCATGAATGATTAATAACAACAAAAAGTATGGGGCAAGATTAGGAGTGTGGCAGAAATGAATTTTATAAAAAT‑‑TTCATCTCTgtca < 1:3099755/91‑4 (MQ=17) gTTATCCATGAATGATTAATAACAACAAAAAGTATGGGGCAAGATTAGGAGTGTGGCAGAAATGAATTTTATAAAAAT‑‑TTCATCTCTgtca < 1:3099896/91‑4 (MQ=17) gTTATCCATGAATGATTAATAACAACAAAAAGTATGGGGCAAGATTAGGAGTGTGACAGAGATGAAATTTTTATAAAA‑‑TTCATTTCTGCca < 1:934096/91‑1 (MQ=255) ttATCCATGAATGATTAATAACAACAAAAAGTATGGGGCAAGATTAGGAGTGTGACAGAGATGAAATTTTTATAAAA‑‑TTCATTTCTGCcac < 1:378467/91‑1 (MQ=255) tATCCATGAATGATTAATAACAACAAAAAGTATGGGGCAAGATTAGGAGTGTGGCAGAAATGAATTTTATAAAAAT‑‑TTCATCTCTGTcaca < 1:1753057/91‑1 (MQ=14) aTCCATGAATGATTAATAACAACAAAAAGTATGGGGCAAGATTAGGAGTGTGACAGAGATGAAATTTTTATAAAA‑‑TTCATTTCTGCCacac > 1:1133654/1‑91 (MQ=255) aTCCATGAATGATTAATAACAACAAAAAGTATGGGGCAAGATTAGGAGTGTGACAGAGATGAAATTTTTATAAAA‑‑TTCATTTCTGCCacac > 1:2232223/1‑91 (MQ=255) ccATGAATGATTAATAACAACAAAAAGTATGGGGCAAGATTAGGAGTGTGACAGAGATGAAATTTTTATAAAA‑‑TTCATTTCTGCCACACTc < 1:3239499/91‑1 (MQ=255) cATGAATGATTAATAACAACAAAAAGTATGGGGCAAGATTAGGAGTGTGGCAGAAATGAATTTTATAAAAAT‑‑TTCATCTCTGTCACACTcc < 1:497038/91‑1 (MQ=14) cATGAATGATTAATAACAACAAAAAGTATGGGGCAAGATTAGGAGTGTGACAGAGATGAAATTTTTATAAAA‑‑TTCATTTCTGCCACACTcc < 1:4104396/91‑1 (MQ=255) tgaatgaTTAATAACAACAAAAAGTATGGGGCAAGATTAGGAGTGTGACAGAGATGAAATTTTTATAAAA‑‑TTCATTTCTGCCACACTCCtt < 1:2934184/91‑1 (MQ=255) gaatgaTTAATAACAACAAAAAGTATGGGGCAAGATTAGGAGTGTGACAGAGATGAAATTTTTATAAAA‑‑TTCATTTCTGCCACACTCCttt < 1:2326469/91‑1 (MQ=255) gaatgaTTAATAACAACAAAAAGTATGGGGCAAGATTAGGAGTGTGACAGAGATGAAATTTTTATAAAA‑‑TTCATTTCTGCCACACTCCttt < 1:4027861/91‑1 (MQ=255) aatgaTTAATAACAACAAAAAGTATGGGGCAAGATTAGGAGTGTGGCAGAGATGAAATTTTTATAAAA‑‑TTCATTTCTGCCACACTCCtttt > 1:2332863/1‑91 (MQ=255) aatgaTTAATAACAACAAAAAGTATGGGGCAAGATTAGGAGTGTGGCAGAAATGAATTTTATAAAAAT‑‑TTCATCTCTGTCACACTCCtaat < 1:2582593/91‑4 (MQ=2) aatgaTTAATAACAACAAAAAGTATGGGGCAAGATTAGGAGTGTGACAGAGATGAAATTTTTATAAAA‑‑TTCATTTCTGCCACACTCCtttt > 1:1852017/1‑91 (MQ=255) gaTTAATAACAACAAAAAGTATGGGGCAAGATTAGGAGTGTGACAGAGATGAAATTTTTATAAAA‑‑TTCATTTCTGCCACACTCCTTTttga > 1:3818351/1‑91 (MQ=255) gaTTAATAACAACAAAAAGTATGGGGCAAGATTAGGAGTGTGACAGAGATGAAATTTTTATAAAA‑‑TTCATTTCTGCCACACTCCTTTttga < 1:1640639/91‑1 (MQ=255) aTTAATAACAACAAAAAGTATGGGGCAAGATTAGGAGTGTGACAGAGATGAAATTTTTATAAAA‑‑TTCATTTCTGCCACACTCCTTTttgat < 1:1399048/91‑1 (MQ=255) aTTAATAACAACAAAAAGTATGGGGCAAGATTAGGAGTGTGACAGAGATGAAATTTTTATAAAA‑‑TTCATTTCTGCCACACTCCTTTttgat > 1:2520084/1‑91 (MQ=255) aTTAATAACAACAAAAAGTATGGGGCAAGATTAGGAGTGTGACAGAGATGAAATTTTTATAAAA‑‑TTCATTTCTGCCACACTCCTTTttgat > 1:3571537/1‑91 (MQ=255) aataaCAACAAAAAGTATGGGGCAAGATTAGGAGTGTGACAGAGATGAAATTTTTATAAAA‑‑TTCATTTCTGCCACACTCCTTTttgattga > 1:1018175/1‑91 (MQ=255) ataaCAACAAAAAGTATGGGGCAAGATTAGGAGTGTGACAGAGATGAAATTTTTATAAAA‑‑TTCATTTCTGCCACACTCCTTTTTGATTGaa > 1:1972601/1‑91 (MQ=255) ataaCAACAAAAAGTATGGGGCAAGATTAGGAGTGTGACAGAGATGAAATTTTTATAAAA‑‑TTCATTTCTGCCACACTCCTTTTTGATTGaa > 1:1970447/1‑91 (MQ=255) taaCAACAAAAAGTATGGGGCAAGATTAGGAGTGTGACAGAGATGAAATTTTTATAAAA‑‑TTCATTTCTGCCACACTCCTTTTTGATTGAAt < 1:3411534/91‑1 (MQ=255) aacaacAAAAAGTATGGGGCAAGATTAGGAGTGTGACAGAGATGAAATTTTTATAAAA‑‑TTCATTTCTGCCACACTCCTTTTTGATTGAAtt < 1:3112305/91‑1 (MQ=255) aacaacAAAAAGTATGGGGCAAGATTAGGAGTGTGACAGAGATGAAATTTTTATAAAA‑‑TTCATTTCTGCCACACTCCTTTTTGATTGAAtt < 1:336878/91‑1 (MQ=255) aacaacAAAAAGTATGGGGCAAGATTAGGAGTGTGACAGAGATGAAATTTTTATAAAA‑‑TTCATTTCTGCCACACTCCTTTTTGATTGAAtt < 1:337186/91‑1 (MQ=255) acaacaAAAAGTATGGGGCAAGATTAGGAGTGTGACAGAGATGAAATTTTTATAAAA‑‑TTCATTTCTGCCACACTCCTTTTTGATTGAATTa > 1:496747/1‑91 (MQ=255) acaacaAAAAGTATGGGGCAAGATTAGGAGTGTGACAGAGATGAAATTTTTATAAAA‑‑TTCATTTCTGCCACACTCCTTTTTGATTGAATTa > 1:497326/1‑91 (MQ=255) caaAAAGTATGGGGCAAGATTAGGAGTGTGACAGAGATGAAATTTTTATAAAA‑‑TTCATTTCTGCCACACTCCTTTTTGATTGAATTAGCAt > 1:969945/1‑91 (MQ=255) caaAAAGTATGGGGCAAGATTAGGAGTGTGACAGAGATGAAATTTTTATAAAA‑‑TTCATTTCTGCCACACTCCTTTTTGATTGAATTAGCAt > 1:1737287/1‑91 (MQ=255) aaaaaGTATGGGGCAAGATTAGGAGTGTGACAGAGATGAAATTTTTATAAAA‑‑TTCATTTCTGCCACACTCCTTTTTGATTGAATTAGCAtt < 1:4020534/91‑1 (MQ=255) aaGTATGGGGCAAGATTAGGAGTGTGACAGAGATGAAATTTTTATAAAA‑‑TTCATTTCTGCCACACTCCTTTTTGATTGAATTAGCATTTTa > 1:3789443/1‑91 (MQ=255) aGTATGGGGCAAGATTAGGAGTGTGACAGAGATGAAATTTTTATAAAA‑‑TTCATTTCTGCCACACTCCTTTTTGATTGAATTAGCATTTTAc < 1:2246148/91‑1 (MQ=255) aGTATGGGGCAAGATTAGGAGTGTGACAGAGATGAAATTTTTATAAAA‑‑TTCATTTCTGCCACACTCCTTTTTGATTGAATTAGCATTTTAc < 1:3160809/91‑1 (MQ=255) gTATGGGGCAAGATTAGGAGTGTGACAGAGATGAAATTTTTATAAAA‑‑TTCATTTCTGCCACACTCCTTTTTGATTGAATTAGCATTTTACg > 1:1273361/1‑91 (MQ=255) tGGGGCAAGATTAGGAGTGTGACAGAGATGAAATTTTTATAAAA‑‑TTCATTTCTGCCACACTCCTTTTTGATTGAATTAGCATTTTACGATc < 1:2182310/91‑1 (MQ=255) tGGGGCAAGATTAGGAGTGTGACAGAGATGAAATTTTTATAAAA‑‑TTCATTTCTGCCACACTCCTTTTTGATTGAATTAGCATTTTACGATc > 1:1571222/1‑91 (MQ=255) ggggCAAGATTAGGAGTGTGACAGAGATGAAATTTTTATAAAA‑‑TTCATTTCTGCCACACTCCTTTTTGATTGAATTAGCATTTTACGATCa > 1:510250/1‑91 (MQ=255) ggggCAAGATTAGGAGTGTGACAGAGATGAAATTTTTATAAAA‑‑TTCATTTCTGCCACACTCCTTTTTGATTGAATTAGCATTTTACGATCa > 1:2336528/1‑91 (MQ=255) ggggCAAGATTAGGAGTGTGACAGAGATGAAATTTTTATAAAA‑‑TTCATTTCTGCCACACTCCTTTTTGATTGAATTAGCATTTTACGATCa > 1:2593080/1‑91 (MQ=255) gggCAAGATTAGGAGTGTGACAGAGATGAAATTTTTATAAAA‑‑TTCATTTCTGCCACACTCCTTTTTGATTGAATTAGCATTTTACGATCAt < 1:2166780/91‑1 (MQ=255) gggCAAGATTAGGAGTGTGACAGAGATGAAATTTTTATAAAA‑‑TTCATTTCTGCCACACTCCTTTTTGATTGAATTAGCATTTTACGATCAt < 1:2166830/91‑1 (MQ=255) ggCAAGATTAGGAGTGTGACAGAGATGAAATTTTTATAAAA‑‑TTCATTTCTGCCACACTCCTTTTTGATTGAATTAGCATTTTACGATCATa > 1:513040/1‑91 (MQ=255) ttACGAGTGCGACAGAGATGAAATTTTTATAAAA‑‑TTCATTTCTGCCACACTCCTTTTTGATTGAATTAGCATTTTACGATCATAAACAGTc < 1:3727446/91‑1 (MQ=255) aGGAGTGTGACAGAGATGAAATTTTTATAAAA‑‑TTCATTTCTGCCACACTCCTTTTTGATTGAATTAGCATTTTACGATCATAAACAGTCAt < 1:3772122/91‑1 (MQ=255) aGGAGTGTGACAGAGATGAAATTTTTATAAAA‑‑TTCATTTCTGCCACACTCCTTTTTGATTGAATTAGCATTTTACGATCATAAACAGTCAt < 1:1999169/91‑1 (MQ=255) aGGAGTGTGACAGAGATGAAATTTTTATAAAA‑‑TTCATTTCTGCCACACTCCTTTTTGATTGAATTAGCATTTTACGATCATAAACAGTCAt > 1:2663868/1‑91 (MQ=255) ggAGTGTGACAGAGATGAAATTTTTATAAAA‑‑TTCATTTCTGCCACACTCCTTTTTGATTGAATTAGCATTTTACGATCATAAACAGTCAtt > 1:1139591/1‑91 (MQ=255) ggAGTGTGACAGAGATGAAATTTTTATAAAA‑‑TTCATTTCTGCCACACTCCTTTTTGATTGAATTAGCATTTTACGATCATAAACAGTCAtt > 1:1452989/1‑91 (MQ=255) ggAGTGTGACAGAGATGAAATTTTTATAAAA‑‑TTCATTTCTGCCACACTCCTTTTTGATTGAATTAGCATTTTACGATCATAAACAGTCAtt > 1:575465/1‑91 (MQ=255) ggAGTGTGACAGAGATGAAATTTTTATAAAA‑‑TTCATTTCTGCCACACTCCTTTTTGATTGAATTAGCATTTTACGATCATAAACAGTCAtt < 1:911528/91‑1 (MQ=255) gAGTGTGACAGAGATGAAATTTTTATAAAA‑‑TTCATTTCTGCCACACTCCTTTTTGATTGAATTAGCATTTTACGATCATAAACAGTCATta > 1:322715/1‑91 (MQ=255) gAGTGTGACAGAGATGAAATTTTTATAAAA‑‑TTCATTTCTGCCACACTCCTTTTTGATTGAATTAGCATTTTACGATCATAAACAGTCATta < 1:1178726/91‑1 (MQ=255) aGTGTGGCAGAAATGAATTTTATAAAAAT‑‑TTCATCTCTGTCACACTCCTTTTTGATTGAATTAGCATTTTACGATCATAAACAGTCATtat > 1:1802078/1‑91 (MQ=14) aGTGTGGCAGAAATGAATTTTATAAAAAT‑‑TTCATCTCTGTCACACTCCTTTTTGATTGAATTAGCATTTTACGATCATAAACAGTCATtat > 1:83481/1‑91 (MQ=14) gtgtGACAGAGATGAAATTTTTATAAAA‑‑TTCATTTCTGCCACACTCCTTTTTGATTGAATTAGCATTTTACGATCATAAACAGTCATtata > 1:843355/1‑91 (MQ=255) gtgACAGAGATGAAATTTTTATAAAA‑‑TTCATTTCTGCCACACTCCTTTTTGATTGAATTAGCATTTTACGATCATAAACAGTCATTATAAt < 1:3953783/91‑1 (MQ=255) gtgACAGAGATGAAATTTTTATAAAA‑‑TTCATTTCTGCCACACTCCTTTTTGATTGAATTAGCATTTTACGATCATAAACAGTCATTATAAt < 1:4020385/91‑1 (MQ=255) gtgACAGAGATGAAATTTTTATAAAA‑‑TTCATTTCTGCCACACTCCTTTTTGATTGAATTAGCATTTTACGATCATAAACAGTCATTATAAt < 1:4020387/91‑1 (MQ=255) tgACAGAGATGAAATTTTTATAAAA‑‑TTCATTTCTGCCACACTCCTTTTTGATTGAATTAGCATTTTACGATCATAAACAGTCATTATAAtt < 1:3200977/91‑1 (MQ=255) tgACAGAGATGAAATTTTTATAAAA‑‑TTCATTTCTGCCACACTCCTTTTTGATTGAATTAGCATTTTACGATCATAAACAGTCATTATAAtt < 1:3198840/91‑1 (MQ=255) gACAGAGATGAAATTTTTATAAAA‑‑TTCATTTCTGCCACACTCCTTTTTGATTGAATTAGCATTTTACGATCATAAACAGTCATTATAATTg < 1:1381638/91‑1 (MQ=255) gACAGAGATGAAATTTTTATAAAA‑‑TTCATTTCTGCCACACTCCTTTTTGATTGAATTAGCATTTTACGATCATAAACAGTCATTATAATTg < 1:1381512/91‑1 (MQ=255) aCAGAGATGAAATTTTTATAAAA‑‑TTCATTTCTGCCACACTCCTTTTTGATTGAATTAGCATTTTACGATCATAAACAGTCATTATAATTGa < 1:4112789/91‑1 (MQ=255) cAGAGATGAAATTTTTATAAAA‑‑TTCATTTCTGCCACACTCCTTTTTGATTGAATTAGCATTTTACGATCATAAACAGTCATTATAATTGAg > 1:10473/1‑91 (MQ=255) cAGAAATGAATTTTATAAAAAT‑‑TTCATCTCTGTCACACTCCTTTTTGATTGAATTAGCATTTTACGATCATAAACAGTCATTATAATTGAg > 1:3009693/1‑91 (MQ=18) gaTGAAATTTTTATAAAA‑‑TTCATTTCTGCCACACTCCTTTTTGATTGAATTAGCATTTTACGATCATAAACAGTCATTATAATTGAGTAtt > 1:2607177/1‑91 (MQ=255) gaTGAAATTTTTATAAAA‑‑TTCATTTCTGCCACACTCCTTTTTGATTGAATTAGCATTTTACGATCATAAACAGTCATTATAATTGAGTAtt > 1:2184089/1‑91 (MQ=255) gaTGAAATTTTTATAAAA‑‑TTCATTTCTGCCACACTCCTTTTTGATTGAATTAGCATTTTACGATCATAAACAGTCATTATAATTGAGTAtt > 1:140868/1‑91 (MQ=255) gAAATTTTTATAAAA‑‑TTCATTTCTGCCACACTCCTTTTTGATTGAATTAGCATTTTACGATCATAAACAGTCATTATAATTGAGTATTTGa > 1:2156992/1‑91 (MQ=255) tgaattttATAAAAATTTCATCTCTGTCACACTCCTTTTTGATTGAATTAGCATTTTACGATCATAAACAGTCATTATAATTGAGTATTTg > 1:100679/5‑91 (MQ=21) ttttATAAAA‑‑TTCATTTCTGCCACACTCCTTTTTGATTGAATTAGCATTTTACGATCATAAACAGTCATTATAATTGAGTATTTGAACATa < 1:2246211/91‑1 (MQ=255) ttttATAAAA‑‑TTCATTTCTGCCACACTCCTTTTTGATTGAATTAGCATTTTACGATCATAAACAGTCATTATAATTGAGTATTTGAACATa > 1:728943/1‑91 (MQ=255) ttttATAAAA‑‑TTCATTTCTGCCACACTCCTTTTTGATTGAATTAGCATTTTACGATCATAAACAGTCATTATAATTGAGTATTTGAACATa < 1:3363275/91‑1 (MQ=255) tatataA‑‑TTCATTTCTGCCACACTCCTTTTTGATTGAATTAGCATTTTACGATCATAAACAGTCATTATAATTGAGTATTTGAACATgaaa > 1:3271297/1‑91 (MQ=255) tataAAA‑‑TTCATTTCTGCCACACTCCTTTTTGATTGAATTAGCATTTTACGATCATAAACAGTCATTATAATTGAGTATTTGAACATaaaa > 1:3946832/1‑91 (MQ=255) tataAAA‑‑TTCATTTCTGCCACACTCCTTTTTGATTGAATTAGCATTTTACGATCATAAACAGTCATTATAATTGAGTATTTGAACATaaaa > 1:3946893/1‑91 (MQ=255) taAAA‑‑TTCATTTCTGCCACACTCCTTTTTGATTGAATTAGCATTTTACGATCATAAACAGTCATTATAATTGAGTATTTGAACATAAAAAt < 1:2475001/91‑1 (MQ=255) aaa‑‑TTCATTTCTGCCACACTCCTTTTTGATTGAATTAGCATTTTACGATCATAAACAGTCATTATAATTGAGTATTTGAACATAAAAATGt > 1:3057596/1‑91 (MQ=255) | CAAAATTGGAGCAGTTATCCATGAATGATTAATAACAACAAAAAGTATGGGGCAAGATTAGGAGTGTGACAGAGATGAAATTTTTATAAAA‑‑TTCATTTCTGCCACACTCCTTTTTGATTGAATTAGCATTTTACGATCATAAACAGTCATTATAATTGAGTATTTGAACATAAAAATGT > USA300TCH1516_ALE/770787‑770965 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |