| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | USA300TCH1516_ALE | 779,959 | C→T | 7.6% | intergenic (+15/+57) | csbB → / ← saeS | Putative glycosyltransferase CsbB/Histidine protein kinase SaeS |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | USA300TCH1516_ALE | 779,959 | 0 | C | T | 7.6% | 414.0 / 16.7 | 131 | intergenic (+15/+57) | csbB/saeS | Putative glycosyltransferase CsbB/Histidine protein kinase SaeS |
| Reads supporting (aligned to +/- strand): ref base C (62/59); new base T (4/6); total (66/65) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 5.31e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.80e-01 | |||||||||||
Only 100 of 135 total aligned reads displayed.
ATATATTATTCAAGCTACAAATCTTTCAAGTCTTGAAAATGATGAGAAGGATACCCATAAAGTTTATTCTAAATAAACAAAAAAAGAAGCCCTCATTAATGGGAGCTTCTTTTTAGTCTTTGCATTTTATTTTATAAATAAATCGGATTATGACGTAATGTCTAATTTGTGTAATGTTA > USA300TCH1516_ALE/779869‑780047 | atatatTATTCAAGCTACAAATCTTTCAAGTCTTGAAAATGATGAGAAGGATACCCATAAAGTTTATTCTAAATAAACAAAAAAAGAAGcc < 1:937240/91‑1 (MQ=255)atatatTATTCAAGCTACAAATCTTTCAAGTCTTGAAAATGATGAGAAGGATACCCATAAAGTTTATTCTAAATAAACAAAAAAAGAAGcc < 1:3578286/91‑1 (MQ=255)atatatTATTCAAGCTACAAATCTTTCAAGTCTTGAAAATGATGAGAAGGATACCCATAAAGTTTATTCTAAATAAACAAAAAAAGAAGcc > 1:603552/1‑91 (MQ=255)atatatTATTCAAGCTACAAATCTTTCAAGTCTTGAAAATGATGAGAAGGATACCCATAAAGTTTATTCTAAATAAACAAAAAAAGAAGcc > 1:603584/1‑91 (MQ=255) atatTATTCAAGCTACAAATCTTTCAAGTCTTGAAAATGATGAGAAGGATACCCATAAAGTTTATTCTAAATAAACAAAAAAAGAAGCCCt < 1:3167672/91‑1 (MQ=255) tattatTCAAGCTACAAATCTTTCAAGTCTTGAAAATGATGAGAAGGATACCCATAAAGTTTATTCTAAATAAACAAAAAAAGAAGCCCTc < 1:28210/91‑1 (MQ=255) attattCAAGCTACAAATCTTTCAAGTCTTGAAAATGATGAGAAGGATACCCATAAAGTTTATTCTAAATAAACAAAAAAAGAAGCCCTCa < 1:4079346/91‑1 (MQ=255) attattCAAGCTACAAATCTTTCAAGTCTTGAAAATGATGAGAAGGATACCCATAAAGTTTATTCTAAATAAACAAAAAAAGAAGCCCTCa < 1:2123515/91‑1 (MQ=255) tattCAAGCTACAAATCTTTCAAGTCTTGAAAATGATGAGAAGGATACCCATAAAGTTTATTCTAAATAAACAAAAAAAGAAGCCCTCAtt < 1:53099/91‑1 (MQ=255) tattCAAGCTACAAATCTTTCAAGTCTTGAAAATGATGAGAAGGATACCCATAAAGTTTATTCTAAATAAACAAAAAAAGAAGCCCTCAtt > 1:1149604/1‑91 (MQ=255) tattCAAGCTACAAATCTTTCAAGTCTTGAAAATGATGAGAAGGATACCCATAAAGTTTATTCTAAATAAACAAAAAAAGAAGCCCCCAtt < 1:2903126/91‑1 (MQ=255) tattCAAGCTACAAATCTTTCAAGTCTTGAAAATGATGAGAAGGATACCCATAAAGTTTATTCTAAATAAACAAAAAAAGAAGCCCCCAtt < 1:2903141/91‑1 (MQ=255) attCAAGCTACAAATCTTTCAAGTCTTGAAAATGATGAGAAGGATACCCATAAAGTTTATTCTAAATAAACAAAAAAAGAAGCCCTCATTa > 1:564955/1‑91 (MQ=255) attCAAGCTACAAATCTTTCAAGTCTTGAAAATGATGAGAAGGATACCCATAAAGTTTATTCTAAATAAACAAAAAAAGAAGCCCTCATTa > 1:564538/1‑91 (MQ=255) aGCTACAAATCTTTCAAGTCTTGAAAATGATGAGAAGGATACCCATAAAGTTTATTCTAAATAAACAAAAAAAGAAGCCCTCATTAATggg > 1:38128/1‑91 (MQ=255) gCTACAAATCTTTCAAGTCTTGAAAATGATGAGAAGGATACCTATAAAGTTTATTCTAAATAAACAAAAAAAGAAGCCCTCATTAATGGGa < 1:1538125/91‑1 (MQ=255) gCTACAAATCTTTCAAGTCTTGAAAATGATGAGAAGGATACCCATAAAGTTTATTCTAAATAAACAAAAAAAGAAGCCCTCATTAATGGGa > 1:3871866/1‑91 (MQ=255) gCTACAAATCTTTCAAGTCTTGAAAATGATGAGAAGGATACCCATAAAGTTTATTCTAAATAAACAAAAAAAGAAGCCCTCATTAATGGGa < 1:2015244/91‑1 (MQ=255) gCTACAAATCTTTCAAGTCTTGAAAATGATGAGAAGGATACCCATAAAGTTTATTCTAAATAAACAAAAAAAGAAGCCCTCATTAATGGGa > 1:89381/1‑91 (MQ=255) gCTACAAATCTTTCAAGTCTTGAAAATGATGAGAAGGATACCCATAAAGTTTATTCTAAATAAACAAAAAAAGAAGCCCTCATTAATGGGa < 1:2788662/91‑1 (MQ=255) cTACAAATCTTTCAAGTCTTGAAAATGATGAGAAGGATACCCATAAAGTTTATTCTAAATAAACAAAAAAAGAAGCCCTCATTAATGGGAg < 1:2939254/91‑1 (MQ=255) tACAAATCTTTCAAGTCTTGAAAATGATGAGAAGGATACCCATAAAGTTTATTCTAAATAAACAAAAAAAGAAGCCCTCATTAATGGGAGc < 1:2489437/91‑1 (MQ=255) tACAAATCTTTCAAGTCTTGAAAATGATGAGAAGGATACCCATAAAGTTTATTCTAAATAAACAAAAAAAGAAGCCCTCATTAATGGGAGc < 1:366500/91‑1 (MQ=255) tACAAATCTCTCAAGTCTTGAAAATGATGAGAAGGATACCCATAAAGTTTATTCTAAATAAACAAAAAAAGAAGCCCTCATTAATGGGAGc < 1:3967846/91‑1 (MQ=255) aCAAATCTTTCAAGTCTTGAAAATGATGAGAAGGATACCCATAAAGTTTATTCTAAATAAACAAAAAAAGAAGCCCTCATTAATGGGAGct < 1:1858547/91‑1 (MQ=255) aCAAATCTTTCAAGTCTTGAAAATGATGAGAAGGATACCCATAAAGTTTATTCTAAATAAACAAAAAAAGAAGCCCTCATTAATGGGAGct > 1:526692/1‑91 (MQ=255) cAAATCTTTCAAGTCTTGAACATGATGAGAAGGATACCCATAAAGTTTATTCTAAATAAACAAAAAAAGAAGCCCTCATTAATGGGAGctt < 1:2522786/91‑1 (MQ=255) aaaTCTTTCAAGTCTTGAAAATGATGAGAAGGATACCCATAAAGTTTATTCTAAATAAACAAAAAAAGAAGCTCCCATTAATGAGGGcttc < 1:1111664/91‑1 (MQ=37) aaaTCTTTCAAGTCTTGAAAATGATGAGAAGGATACCCATAAAGTTTATTCTAAATAAACAAAAAAAGAAGCTCCCATTAATGAGGGcttc < 1:175468/91‑1 (MQ=37) aaTCTTTCAAGTCTTGAAAATGATGAGAAGGATACCCATAAAGTTTATTCTAAATAAACAAAAAAAGAAGCCCTCATTAATGGGAGcttct < 1:3832468/91‑1 (MQ=255) aaTCTTTCAAGTCTTGAAAATGATGAGAAGGATACCCATAAAGTTTATTCTAAATAAACAAAAAAAGAAGCCCTCATTAATGGGAGcttct > 1:2363487/1‑91 (MQ=255) aTCTTTCAAGTCTTGAAAATGATGAGAAGGATACCCATAAAGTTTATTCTAAATAAACAAAAAAAGAAGCCCTCATTAATGGGAGcttctt > 1:3625904/1‑91 (MQ=255) aTCTTTCAAGTCTTGAAAATGATGAGAAGGATACCCATAAAGTTTATTCTAAATAAACAAAAAAAGAAGCCCTCATTAATGGGAGcttctt > 1:2910165/1‑91 (MQ=255) aTCTTTCAAGTCTTGAAAATGATGAGAAGGATACCCATAAAGTTTATTCTAAATAAACAAAAAAAGAAGCCCTCATTAATGGGAGcttctt > 1:2910690/1‑91 (MQ=255) tCTTTCAAGTCTTGAAAATGATGAGAAGGATACCCATAAAGTTTATTCTAAATAAACAAAAAAAGAAGCTCCCATTAATGAGGGCTTCttt < 1:1291955/91‑1 (MQ=37) cTTTCAAGTCTTGAAAATGATGAGAAGGATACCCATAAAGTTTATTCTAAATAAACAAAAAAAGAAGCTCCCATTAATGAGGGCTTCtttt < 1:3983295/91‑1 (MQ=37) cAAGTCTTGAAAATGATGAGAAGGATACCCATAAAGTTTATTCTAAATAAACAAAAAAAGAAGCCCTCATTAATGGGAGCTTCTTTTTAGt < 1:2377976/91‑1 (MQ=255) aGTCTTGAAAATGATGAGAAGGATACCCATAAAGTTTATTCTAAATAAACAAAAAAAGAAGCCCTCATTAATGGGAGCTTCTTTTTAGTCt > 1:1399328/1‑91 (MQ=255) aGTCTTGAAAATGATGAGAAGGATACCCATAAAGTTTATTCTAAATAAACAAAAAAAGAAGCCCTCATTAATGGGAGCTTCTTTTTAGTCt > 1:1601521/1‑91 (MQ=255) aGTCTTGAAAATGATGAGAAGGATACCCATAAAGTTTATTCTAAATAAACAAAAAAAGAAGCCCTCATTAATGGGAGCTTCTTTTTAGTCt > 1:1952273/1‑91 (MQ=255) gTCTTGAAAATGATGAGAAGGATACCCATAAAGTTTATTCTAAATAAACAAAAAAAGAAGCCCTCATTAATGGGAGCTTCTTTTTAGTCtt < 1:2515885/91‑1 (MQ=255) gTCTTGAAAATGATGAGAAGGATACCCATAAAGTTTATTCTAAAGAAACAAAAAAAGAAGCCCTCATTAAGGGGAGCTTCTTTTTAGTCtt < 1:3296817/91‑1 (MQ=255) ttGAAAATGATGAGAAGGATACCCATAAAGTTTATTCTAAATAAACAAAAAAAGAAGCCCTCATTAATGGGAGCTTCTTTTTAGTCTTTGc > 1:373344/1‑91 (MQ=255) tGAAAATGATGAGAAGGATACCCATAAAGTTTATTCTAAATAAACAAAAAAAGAAGCCCTCATTAATGGGAGCTTCTTTTTAGTCTTTGCa < 1:3566517/91‑1 (MQ=255) tGAAAATGATGAGAAGGATACCCATAAAGTTTATTCTAAATAAACAAAAAAAGAAGCCCTCATTAATGGGAGCTTCTTTTTAGTCTTTGCa < 1:1982861/91‑1 (MQ=255) tGAAAATGATGAGAAGGATACCCATAAAGTTTATTCTAAATAAACAAAAAAAGAAGCCCTCATTAATGGGAGCTTCTTTTTAGTCTTTGCa > 1:221720/1‑91 (MQ=255) gAAAATGATGAGAAGGATACCCATAAAGTTTATTCTAAATAAACAAAAAAAGAAGCCCTCATTAATGGGAGCTTCTTTTTAGTCTTTGCat < 1:1853026/91‑1 (MQ=255) aaaaTGATGAGAAGGATACCCATAAAGTTTATTCTAAATAAACAAAAAAAGCAGCCCTCATTAATGGGAGCTTCTTTTTAGTCTTTGCatt > 1:75437/1‑91 (MQ=255) aaaaTGATGAGAAGGATACCCATAAAGTTTATTCTAAATAAACAAAAAAAGAAGCCCTCATTAATGGGAGCTTCTTTTTAGTCTTTGCatt < 1:3432025/91‑1 (MQ=255) aaTGATGAGAAGGATACCCATAAAGTTTATTCTAAATAAACAAAAAAAGAAGCCCTCATTAATGGGAGCTTCTTTTTAGTCTTTGCatttt < 1:1670276/91‑1 (MQ=255) aaTGATGAGAAGGATACCCATAAAGTTTATTCTAAATAAACAAAAAAAGAAGCCCTCATTAATGGGAGCTTCTTTTTAGTCTTTGCatttt > 1:1990662/1‑91 (MQ=255) atgatgAGAAGGATACCCATAAAGTTTATTCTAAATAAACAAAAAAAGAAGCCCTCATTAATGGGAGCTTCTTTTTAGTCTTTGCatttta > 1:3549546/1‑91 (MQ=255) tgatgaGAAGGATACCCATAAAGTTTATTCTAAATAAACAAAAAAAGAAGCCCTCATTAATGGGAGCTTCTTTTTAGTCTTTGCattttat > 1:1552388/1‑91 (MQ=255) tgatgaGAAGGATACCCATAAAGTTTATTCTAAATAAACAAAAAAAGAAGCCCTCATTAATGGGAGCTTCTTTTTAGTCTTTGCattttat < 1:583820/91‑1 (MQ=255) gatgaGAAGGATACCCATAAAGTTTATTCTAAATAAACAAAAAAAGAAGCCCTCATTAATGGGAGCTTCTTTTTAGTCTTTGCattttatt > 1:362975/1‑91 (MQ=255) atgaGAAGGATACCCATAAAGTTTATTCTAAATAAACAAAAAAAGAAGCCCTCATTAATGGGAGCTTCTTTTTAGTCTTTGCattttattt > 1:2841204/1‑91 (MQ=255) gagaAGGATACCCATAAAGTTTATTCTAAATAAACAAAAAAAGAAGCCCTCATTAATGGGAGCTTCTTTTTAGTCTTTGCAttttatttta > 1:1137533/1‑91 (MQ=255) gagaAGGATACCCATAAAGTTTATTCTAAATAAACAAAAAAAGAAGCCCTCATTAATGGGAGCTTCTTTTTAGTCTTTGCAttttatttta < 1:2491130/91‑1 (MQ=255) gagaAGGATACCCATAAAGTTTATTCTAAATAAACAAAAAAAGAAGCCCTCATTAATGGGAGCTTCTTTTTAGTCTTTGCAttttatttta > 1:2040908/1‑91 (MQ=255) agaAGGATACCCATAAAGTTTATTCTAAATAAACAAAAAAAGAAGCCCTCATTAATGGGAGCTTCTTTTTAGTCTTTGCATtttattttat > 1:658925/1‑91 (MQ=255) gATACCCATAAAGTTTATTCTAAATAAACAAAAAAAGAAGCCCTCATTAATGGGAGCTTCTTTTTAGTCTTTGCATTTTATTTTataaata > 1:527508/1‑91 (MQ=255) aTACCCATAAAGTTTATTCTAAATAAACAAAAAAAGAAGCCCTCATTAATGGGAGCTTCTTTTTAGTCTTTGCATTTTATTTTataaataa < 1:843677/91‑1 (MQ=255) tACCCATAAAGTTTATTCTAAATAAACAAAAAAAGAAGCCCTCATTAATGGGAGCTTCTTTTTAGTCTTTGCATTTTATTTTAtaaataaa < 1:2480988/91‑1 (MQ=255) aCCCATAAAGTTTATTCTAAATAAACAAAAAAAGAAGCCCTCATTAATGGGAGCTTCTTTTTAGTCTTTGCATTTTATTTTATaaataaat < 1:1986578/91‑1 (MQ=255) aCCCATAAAGTTTATTCTAAATAAACAAAAAAAGAAGCCCTCATTAATGGGAGCTTCTTTTTAGTCTTTGCATTTTATTTTATaaataaat < 1:584665/91‑1 (MQ=255) aCCCATAAAGTTTATTCTAAATAAACAAAAAAAGAAGCCCTCATTAATGGGAGCTTCTTTTTAGTCTTTGCATTTTATTTTATaaataaat < 1:3932510/91‑1 (MQ=255) ccATAAAGTTTATTCTAAATAAACAAAAAAAGAAGCCCTCATTAATGGGAGCTTCTTTTTAGTCTTTGCATTTTATTTTATAAATAAATCg < 1:1492247/91‑1 (MQ=255) ccATAAAGTTTATTCTAAATAAACAAAAAAAGAAGCCCTCATTAATGGGAGCTTCTTTTTAGTCTTTGCATTTTATTTTATAAATAAATCg < 1:3121715/91‑1 (MQ=255) ccATAAAGTTTATTCTAAATAAACAAAAAAAGAAGCCCTCATTAATGGGAGCTTCTTTTTAGTCTTTGCATTTTATTTTATAAATAAATCg < 1:1581721/91‑1 (MQ=255) cATAAAGTTTATTCTAAATAAACAAAAAAAGAAGCCCTCATTAATGGGAGCTTCTTTTTAGTCTTTGCATTTTATTTTATAAATAAATCgg > 1:585906/1‑91 (MQ=255) gTTTATTCTAAATAAACAAAAAAAGAAGCCCTCATTAATGGGAGCTTCTTTTTAGTCTTTGCATTTTATTTTATAAATAAATCGGATTATg < 1:856498/91‑1 (MQ=255) tATTCTAAATAAACAAAAAAAGAAGCCCTCATTAATGGGAGCTTCTTTTTAGTCTTTGCATTTTATTTTATAAATAAATCGGATTATGACg > 1:1641550/1‑91 (MQ=255) ttCTAAATAAACAAAAAAAGAAGCCCTCATTAATGGGAGCTTCTTTTTAGTCTTTGCATTTTATTTTATAAATAAATCGGATTATGACGTa > 1:364147/1‑91 (MQ=255) aaataaaCAAAAAAAGAAGCCCTCATTAATGGGAGCTTCTTTTTAGTCTTTGCATTTTATTTTATAAATAAATCGGATTATGACGTAATGt < 1:2912304/91‑1 (MQ=255) aataaaCAAAAAAAGAAGCCCTCATTAATGGGAGCTTCTTTTTAGTCTTTGCATTTTATTTTATAAATAAATCGGATTATGACGTAATGTc > 1:2060998/1‑91 (MQ=255) aataaaCAAAAAAAGAAGCCCTCATTAATGGGAGCTTCTTTTTAGTCTTTGCATTTTATTTTATAAATAAATCGGATTATGACGTAATGTc > 1:283296/1‑91 (MQ=255) taaaCAAAAAAAGAAGCCCTCATTAATGGGAGCTTCTTTTTAGTCTTTGCATTTTATTTTATAAATAAATCGGATTATGACGTAATGTCTa > 1:363414/1‑91 (MQ=255) aaCAAAAAAAGAAGCCCTCATTAATGGGAGCTTCTTTTTAGTCTTTGCATTTTATTTTATAAATAAATCGGATTATGACGTAATGTCTAAt > 1:2175011/1‑91 (MQ=255) cAAAAAAAGAAGCCCTCATTAATGGGAGCTTCTTTTTAGTCTTTGCATTTTATTTTATAAATAAATCGGATTATGACGTAATGTCTAAttt > 1:2530888/1‑91 (MQ=255) cAAAAAAAGAAGCCCTCATTAATGGGAGCTTCTTTTTAGTCTTTGCATTTTATTTTATAAATAAATCGGATTATGACGTAATGTCTAAttt > 1:1963111/1‑91 (MQ=255) cAAAAAAAGAAGCCCTCATTAATGGGAGCTTCTTTTTAGTCTTTGCATTTTATTTTATAAATAAATCGGATTATGACGTAATGTCTAAttt > 1:2774028/1‑91 (MQ=255) cAAAAAAAGAAGCCCTCATTAATGGGAGCTTCTTTTTAGCCTCTCCATTTTATTTTATAAATAAATCGGATTATGACGTAATGTCTAAttt > 1:475733/1‑91 (MQ=255) aaaaaaaGAAGCCCTCATTAATGGGAGCTTCTTTTTAGTCTTTGCATTTTATTTTATAAATAAATCGGATTATGACGTAATGTCTAATTtg > 1:2927139/1‑91 (MQ=255) aaaaaaGAAGCCCTCATTAATGGGAGCTTCTTTTTAGTCTTTGCATTTTATTTTATAAATAAATCGGATTATGACGTAATGTCTAATTtgt < 1:526886/91‑1 (MQ=255) aaaaaaGAAGCCCTCATTAATGGGAGCTTCTTTTTAGTCTTTGCATTTTATTTTATAAATAAATCGGATTATGACGTAATGTCTAATTtgt < 1:2526866/91‑1 (MQ=255) aaaaGAAGCTCCCATTAATGAGGGCTTCTTTTTAGTCTTTGCATTTTATTTTATAAATAAATCGGATTATGACGTAATGTCTAATTTgtgt > 1:45642/1‑91 (MQ=37) aaaaGAAGCTCCCATTAATGAGGGCTTCTTTTTAGTCTTTGCATTTTATTTTATAAATAAATCGGATTATGACGTAATGTCTAATTTgtgt > 1:2667524/1‑91 (MQ=37) agaagCCCTCATTAATGGGAGCTTCTTTTTAGTCTTTGCATTTTATTTTATAAATAAATCGGATTATGACGTAATGTCTAATTTGTGTAAt > 1:929841/1‑91 (MQ=255) gaagCCCTCATTAATGGGAGCTTCTTTTTAGTCTTTGCATTTTATTTTATAAATAAATCGGATTACGACGTAATGTCTAATTTGTGTAATg > 1:3847150/1‑91 (MQ=255) aagCCCTCATTAATGGGAGCTTCTTTTTAGTCTTTGCATTTTATTTTATAAATAAATCGGATTATGACGTAATGTCTAATTTGTGTAATGt < 1:2331382/91‑1 (MQ=255) agCCCTCATTAATGGGAGCTTCTTTTTAGTCTTTGCATTTTATTTTATAAATAAATCGGATTATGACGTAATGTCTAATTTGTGTAATGtt > 1:2870800/1‑91 (MQ=255) agCCCTCATTAATGGGAGCTTCTTTTTAGTCTTTGCATTTTATTTTATAAATAAATCGGATTATGACGTAATGTCTAATTTGTGTAATGtt > 1:2925999/1‑91 (MQ=255) agCCCTCATTAATGGGAGCTTCTTTTTAGTCTTTGCATTTTATTTTATAAATAAATCGGATTATGACGTAATGTCTAATTTGTGTAATGtt > 1:702688/1‑91 (MQ=255) agCCCTCATTAATGGGAGCTTCTTTTTAGTCTTTGCATTTTATTTTATAAATAAATCGGATTATGACGTAATGTCTAATTTGTGTAATGtt > 1:685368/1‑91 (MQ=255) agCCCTCATTAATGGGAGCTTCTTTTTAGTCTTTGCATTTTATTTTATAAATAAATCGGATTATGACGTAATGTCTAATTTGTGTAATGtt > 1:2595843/1‑91 (MQ=255) agCCCTCATTAATGGGAGCTTCTTTTTAGTCTTTGCATTTTATTTTATAAATAAATCGGATTATGACGTAATGTCTAATTTGTGTAATGtt > 1:3705598/1‑91 (MQ=255) agCCCTCATTAATGGGAGCTTCTTTTTAGTCTTTGCATTTTATTTTATAAATAAATCGGATTATGACGTAATGTCTAATTTGTGTAATGtt > 1:1478149/1‑91 (MQ=255) gCCCTCATTAATGGGAGCTTCTTTTTAGTCTTTGCATTTTATTTTATAAATAAATCGGATTATGACGTAATGTCTAATTTGTGTAATGTTa < 1:1334562/91‑1 (MQ=255) gCCCTCATTAATGGGAGCTTCTTTTTAGTCTTTGCATTTTATTTTATAAATAAATCGGATTATGACGTAATGTCTAATTTGTGTAATGTTa < 1:1335369/91‑1 (MQ=255) gCCCTCATTAATGGGAGCTTCTTTTTAGTCTTTGCATTTTATTTTATAAATAAATCGGATTATGACGTAATGTCTAATTTGTGTAATGTTa > 1:3154343/1‑91 (MQ=255) | ATATATTATTCAAGCTACAAATCTTTCAAGTCTTGAAAATGATGAGAAGGATACCCATAAAGTTTATTCTAAATAAACAAAAAAAGAAGCCCTCATTAATGGGAGCTTCTTTTTAGTCTTTGCATTTTATTTTATAAATAAATCGGATTATGACGTAATGTCTAATTTGTGTAATGTTA > USA300TCH1516_ALE/779869‑780047 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |