| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | USA300TCH1516_ALE | 779,970 | G→A | 10.4% | intergenic (+26/+46) | csbB → / ← saeS | Putative glycosyltransferase CsbB/Histidine protein kinase SaeS |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | USA300TCH1516_ALE | 779,970 | 0 | G | A | 10.4% | 402.6 / 28.8 | 135 | intergenic (+26/+46) | csbB/saeS | Putative glycosyltransferase CsbB/Histidine protein kinase SaeS |
| Reads supporting (aligned to +/- strand): ref base G (63/58); new base A (8/6); total (71/64) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 7.83e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.11e-01 | |||||||||||
Only 100 of 137 total aligned reads displayed.
AGCTACAAATCTTTCAAGTCTTGAAAATGATGAGAAGGATACCCATAAAGTTTATTCTAAATAAACAAAAAAAGAAGCCCTCATTAATGGGAGCTTCTTTTTAGTCTTTGCATTTTATTTTATAAATAAATCGGATTATGACGTAATGTCTAATTTGTGTAATGTTACAGTCATCGTAG > USA300TCH1516_ALE/779881‑780059 | gCTACAAATCTTTCAAGTCTTGAAAATGATGAGAAGGATACCTATAAAGTTTATTCTAAATAAACAAAAAAAGAAGCCCTCATTAATGGGa < 1:1538125/91‑1 (MQ=255) gCTACAAATCTTTCAAGTCTTGAAAATGATGAGAAGGATACCCATAAAGTTTATTCTAAATAAACAAAAAAAGAAGCCCTCATTAATGGGa > 1:3871866/1‑91 (MQ=255) gCTACAAATCTTTCAAGTCTTGAAAATGATGAGAAGGATACCCATAAAGTTTATTCTAAATAAACAAAAAAAGAAGCCCTCATTAATGGGa < 1:3640773/91‑1 (MQ=255) gCTACAAATCTTTCAAGTCTTGAAAATGATGAGAAGGATACCCATAAAGTTTATTCTAAATAAACAAAAAAAGAAGCCCTCATTAATGGGa < 1:2788662/91‑1 (MQ=255) gCTACAAATCTTTCAAGTCTTGAAAATGATGAGAAGGATACCCATAAAGTTTATTCTAAATAAACAAAAAAAGAAGCCCTCATTAATGGGa < 1:2015244/91‑1 (MQ=255) cTACAAATCTTTCAAGTCTTGAAAATGATGAGAAGGATACCCATAAAGTTTATTCTAAATAAACAAAAAAAGAAGCCCTCATTAATGGGAg < 1:2939254/91‑1 (MQ=255) tACAAATCTTTCAAGTCTTGAAAATGATGAGAAGGATACCCATAAAGTTTATTCTAAATAAACAAAAAAAGAAGCCCTCATTAATGGGAGc < 1:366500/91‑1 (MQ=255) tACAAATCTTTCAAGTCTTGAAAATGATGAGAAGGATACCCATAAAGTTTATTCTAAATAAACAAAAAAAGAAGCCCTCATTAATGGGAGc < 1:2489437/91‑1 (MQ=255) tACAAATCTCTCAAGTCTTGAAAATGATGAGAAGGATACCCATAAAGTTTATTCTAAATAAACAAAAAAAGAAGCCCTCATTAATGGGAGc < 1:3967846/91‑1 (MQ=255) aCAAATCTTTCAAGTCTTGAAAATGATGAGAAGGATACCCATAAAGTTTATTCTAAATAAACAAAAAAAGAAGCCCTCATTAATGGGAGct > 1:526692/1‑91 (MQ=255) cAAATCTTTCAAGTCTTGAACATGATGAGAAGGATACCCATAAAGTTTATTCTAAATAAACAAAAAAAGAAGCCCTCATTAATGGGAGctt < 1:2522786/91‑1 (MQ=255) aaaTCTTTCAAGTCTTGAAAATGATGAGAAGGATACCCATAAAGTTTATTCTAAATAAACAAAAAAAGAAGCTCCCATTAATGAGGGcttc < 1:1111664/91‑1 (MQ=37) aaaTCTTTCAAGTCTTGAAAATGATGAGAAGGATACCCATAAAGTTTATTCTAAATAAACAAAAAAAGAAGCTCCCATTAATGAGGGcttc < 1:2917143/91‑1 (MQ=37) aaaTCTTTCAAGTCTTGAAAATGATGAGAAGGATACCCATAAAGTTTATTCTAAATAAACAAAAAAAGAAGCTCCCATTAATGAGGGcttc < 1:587875/91‑1 (MQ=38) aaTCTTTCAAGTCTTGAAAATGATGAGAAGGATACCCATAAAGTTTATTCTAAATAAACAAAAAAAGAAGCCCTCATTAATGGGAGcttct > 1:2363487/1‑91 (MQ=255) aaTCTTTCAAGTCTTGAAAATGATGAGAAGGATACCCATAAAGTTTATTCTAAATAAACAAAAAAAGAAGCCCTCATTAATGGGAGcttct < 1:3832468/91‑1 (MQ=255) aTCTTTCAAGTCTTGAAAATGATGAGAAGGATACCCATAAAGTTTATTCTAAATAAACAAAAAAAGAAGCCCTCATTAATGGGAGcttctt > 1:3625904/1‑91 (MQ=255) aTCTTTCAAGTCTTGAAAATGATGAGAAGGATACCCATAAAGTTTATTCTAAATAAACAAAAAAAGAAGCCCTCATTAATGGGAGcttctt > 1:2910690/1‑91 (MQ=255) tCTTTCAAGTCTTGAAAATGATGAGAAGGATACCCATAAAGTTTATTCTAAATAAACAAAAAAAGAAGCTCCCATTAATGAGGGCTTCttt < 1:1291955/91‑1 (MQ=37) tCTTTCAAGTCTTGAAAATGATGAGAAGGATACCCATAAAGTTTATTCTAAATAAACAAAAAAAGAAGCCCTCATTAATGGGAGCTTCttt < 1:2973559/91‑1 (MQ=255) cTTTCAAGTCTTGAAAATGATGAGAAGGATACCCATAAAGTTTATTCTAAATAAACAAAAAAAGAAGCTCCCATTAATGAGGGCTTCtttt < 1:3983295/91‑1 (MQ=37) aaGTCTTGAAAATGATGAGAAGGATACCCATAAAGTTTATTCTAAATAAACAAAAAAAGAAGCCCTCATTAATGGGAGCTTCTTTTTAGTc < 1:2454060/91‑1 (MQ=255) aGTCTTGAAAATGATGAGAAGGATACCCATAAAGTTTATTCTAAATAAACAAAAAAAGAAGCCCTCATTAATGGGAGCTTCTTTTTAGTCt > 1:1601521/1‑91 (MQ=255) aGTCTTGAAAATGATGAGAAGGATACCCATAAAGTTTATTCTAAATAAACAAAAAAAGAAGCCCTCATTAATGGGAGCTTCTTTTTAGTCt > 1:1399328/1‑91 (MQ=255) aGTCTTGAAAATGATGAGAAGGATACCCATAAAGTTTATTCTAAATAAACAAAAAAAGAAGCCCTCATTAATGGGAGCTTCTTTTTAGTCt > 1:1952273/1‑91 (MQ=255) gTCTTGAAAATGATGAGAAGGATACCCATAAAGTTTATTCTAAAGAAACAAAAAAAGAAGCCCTCATTAAGGGGAGCTTCTTTTTAGTCtt < 1:3296817/91‑1 (MQ=255) ttGAAAATGATGAGAAGGATACCCATAAAGTTTATTCTAAATAAACAAAAAAAGAAGCCCTCATTAATGGGAGCTTCTTTTTAGTCTTTGc > 1:373344/1‑91 (MQ=255) tGAAAATGATGAGAAGGATACCCATAAAGTTTATTCTAAATAAACAAAAAAAGAAGCCCTCATTAATGGGAGCTTCTTTTTAGTCTTTGCa < 1:1982861/91‑1 (MQ=255) tGAAAATGATGAGAAGGATACCCATAAAGTTTATTCTAAATAAACAAAAAAAGAAGCCCTCATTAATGGGAGCTTCTTTTTAGTCTTTGCa < 1:3566517/91‑1 (MQ=255) gAAAATGATGAGAAGGATACCCATAAAGTTTATTCTAAATAAACAAAAAAAGAAGCCCTCATTAATGGGAGCTTCTTTTTAGTCTTTGCat < 1:1853026/91‑1 (MQ=255) aaaaTGATGAGAAGGATACCCATAAAGTTTATTCTAAATAAACAAAAAAAGCAGCCCTCATTAATGGGAGCTTCTTTTTAGTCTTTGCatt > 1:75437/1‑91 (MQ=255) aaaaTGATGAGAAGGATACCCATAAAGTTTATTCTAAATAAACAAAAAAAGAAGCCCTCATTAATGGGAGCTTCTTTTTAGTCTTTGCatt < 1:3432025/91‑1 (MQ=255) aaaTGATGAGAAGGATACCCATAAAGTTTATTCTAAATAAACAAAAAAAGAAGCCCTCATTAATGGGAGCTTCTTTTTAGTCTTTGCattt > 1:837283/1‑91 (MQ=255) aaTGATGAGAAGGATACCCATAAAGTTTATTCTAAATAAACAAAAAAAGAAGCCCTCATTAATGGGAGCTTCTTTTTAGTCTTTGCatttt < 1:1670276/91‑1 (MQ=255) aaTGATGAGAAGGATACCCATAAAGTTTATTCTAAATAAACAAAAAAAGAAGCCCTCATTAATGGGAGCTTCTTTTTAGTCTTTGCatttt > 1:1990662/1‑91 (MQ=255) atgatgAGAAGGATACCCATAAAGTTTATTCTAAATAAACAAAAAAAGAAGCCCTCATTAATGGGAGCTTCTTTTTAGTCTTTGCatttta > 1:3549546/1‑91 (MQ=255) atgatgAGAAGGATACCCATAAAGTTTATTCTAAATAAACAAAAAAAGAAGCCCTCATTAATGGGAGCTTCTTTTTAGTCTTTGCatttta > 1:3549496/1‑91 (MQ=255) tgatgaGAAGGATACCCATAAAGTTTATTCTAAATAAACAAAAAAAGAAGCCCTCATTAATGGGAGCTTCTTTTTAGTCTTTGCattttat > 1:1552388/1‑91 (MQ=255) gatgaGAAGGATACCCATAAAGTTTATTCTAAATAAACAAAAAAAGAAGCCCTCATTAATGGGAGCTTCTTTTTAGTCTTTGCattttatt > 1:362975/1‑91 (MQ=255) atgaGAAGGATACCCATAAAGTTTATTCTAAATAAACAAAAAAAGAAGCCCTCATTAATGGGAGCTTCTTTTTAGTCTTTGCattttattt < 1:2820658/91‑1 (MQ=255) atgaGAAGGATACCCATAAAGTTTATTCTAAATAAACAAAAAAAGAAGCCCTCATTAATGGGAGCTTCTTTTTAGTCTTTGCattttattt > 1:2841204/1‑91 (MQ=255) tgaGAAGGATACCCATAAAGTTTATTCTAAATAAACAAAAAAAGAAGCCCTCATTAATGGGAGCTTCTTTTTAGTCTTTGCattttatttt > 1:2005729/1‑91 (MQ=255) gagaAGGATACCCATAAAGTTTATTCTAAATAAACAAAAAAAGAAGCCCTCATTAATGGGAGCTTCTTTTTAGTCTTTGCAttttatttta > 1:2040908/1‑91 (MQ=255) gagaAGGATACCCATAAAGTTTATTCTAAATAAACAAAAAAAGAAGCCCTCATTAATGGGAGCTTCTTTTTAGTCTTTGCAttttatttta > 1:1137533/1‑91 (MQ=255) agaAGGATACCCATAAAGTTTATTCTAAATAAACAAAAAAAGAAGCCCTCATTAATGGGAGCTTCTTTTTAGTCTTTGCATtttattttat > 1:658925/1‑91 (MQ=255) agaAGGATACCCATAAAGTTTATTCTAAATAAACAAAAAAAGAAGCCCTCATTAATGGGAGCTTCTTTTTAGTCTTTGCATtttattttat > 1:659030/1‑91 (MQ=255) gaAGGATACCCATAAAGTTTATTCTAAATAAACAAAAAAAGAAGCCCTCATTAATGGGAGCTTCTTTTTAGTCTTTGCATTTTATTTtata < 1:2858168/91‑1 (MQ=255) aaGGATACCCATAAAGTTTATTCTAAATAAACAAAAAAAGAAGCCCTCATTAATGGGAGCTTCTTTTTAGTCTTTGCATTTTATTTTataa > 1:3714605/1‑91 (MQ=255) gATACCCATAAAGTTTATTCTAAATAAACAAAAAAAGAAGCCCTCATTAATGGGAGCTTCTTTTTAGTCTTTGCATTTTATTTTataaata > 1:914648/1‑91 (MQ=255) gATACCCATAAAGTTTATTCTAAATAAACAAAAAAAGAAGCCCTCATTAATGGGAGCTTCTTTTTAGTCTTTGCATTTTATTTTataaata > 1:527508/1‑91 (MQ=255) gATACCCATAAAGTTTATTCTAAATAAACAAAAAAAGAAGCCCTCATTAATGGGAGCTTCTTTTTAGTCTTTGCATTTTATTTTataaata > 1:527554/1‑91 (MQ=255) aTACCCATAAAGTTTATTCTAAATAAACAAAAAAAGAAGCCCTCATTAATGGGAGCTTCTTTTTAGTCTTTGCATTTTATTTTataaataa < 1:843677/91‑1 (MQ=255) tACCCATAAAGTTTATTCTAAATAAACAAAAAAAGAAGCCCTCATTAATGGGAGCTTCTTTTTAGTCTTTGCATTTTATTTTAtaaataaa < 1:2480988/91‑1 (MQ=255) aCCCATAAAGTTTATTCTAAATAAACAAAAAAAGAAGCCCTCATTAATGGGAGCTTCTTTTTAGTCTTTGCATTTTATTTTATaaataaat < 1:584665/91‑1 (MQ=255) aCCCATAAAGTTTATTCTAAATAAACAAAAAAAGAAGCCCTCATTAATGGGAGCTTCTTTTTAGTCTTTGCATTTTATTTTATaaataaat < 1:1986578/91‑1 (MQ=255) aCCCATAAAGTTTATTCTAAATAAACAAAAAAAGAAGCCCTCATTAATGGGAGCTTCTTTTTAGTCTTTGCATTTTATTTTATaaataaat < 1:3932510/91‑1 (MQ=255) aCCCATAAAGTTTATTCTAAATAAACAAAAAAAGAAGCCCTCATTAATGGGAGCTTCTTTTTAGTCTTTGCATTTTATTTTATaaataaat < 1:583243/91‑1 (MQ=255) ccATAAAGTTTATTCTAAATAAACAAAAAAAGAAGCCCTCATTAATGGGAGCTTCTTTTTAGTCTTTGCATTTTATTTTATAAATAAATCg < 1:1581721/91‑1 (MQ=255) ccATAAAGTTTATTCTAAATAAACAAAAAAAGAAGCCCTCATTAATGGGAGCTTCTTTTTAGTCTTTGCATTTTATTTTATAAATAAATCg < 1:1492247/91‑1 (MQ=255) cATAAAGTTTATTCTAAATAAACAAAAAAAGAAGCCCTCATTAATGGGAGCTTCTTTTTAGTCTTTGCATTTTATTTTATAAATAAATCgg > 1:585906/1‑91 (MQ=255) gTTTATTCTAAATAAACAAAAAAAGAAGCCCTCATTAATGGGAGCTTCTTTTTAGTCTTTGCATTTTATTTTATAAATAAATCGGATTATg < 1:856498/91‑1 (MQ=255) tATTCTAAATAAACAAAAAAAGAAGCCCTCATTAATGGGAGCTTCTTTTTAGTCTTTGCATTTTATTTTATAAATAAATCGGATTATGACg > 1:1641550/1‑91 (MQ=255) ttCTAAATAAACAAAAAAAGAAGCCCTCATTAATGGGAGCTTCTTTTTAGTCTTTGCATTTTATTTTATAAATAAATCGGATTATGACGTa > 1:364147/1‑91 (MQ=255) taaataaaCAAAAAAAGAAGCCCTCATTAATGGGAGCTTCTTTTTAGTCTTTGCATTTTATTTTATAAATAAATCGGATTATGACGTAATg > 1:1929003/1‑91 (MQ=255) aaataaaCAAAAAAAGAAGCCCTCATTAATGGGAGCTTCTTTTTAGTCTTTGCATTTTATTTTATAAATAAATCGGATTATGACGTAATGt < 1:2912304/91‑1 (MQ=255) aaCAAAAAAAGAAGCCCTCATTAATGGGAGCTTCTTTTTAGTCTTTGCATTTTATTTTATAAATAAATCGGATTATGACGTAATGTCTAAt > 1:2175011/1‑91 (MQ=255) cAAAAAAAGAAGCCCTCATTAATGGGAGCTTCTTTTTAGTCTTTGCATTTTATTTTATAAATAAATCGGATTATGACGTAATGTCTAAttt > 1:1963111/1‑91 (MQ=255) cAAAAAAAGAAGCCCTCATTAATGGGAGCTTCTTTTTAGCCTCTCCATTTTATTTTATAAATAAATCGGATTATGACGTAATGTCTAAttt > 1:475733/1‑91 (MQ=255) aaaaaaaGAAGCCCTCATTAATGGGAGCTTCTTTTTAGTCTTTGCATTTTATTTTATAAATAAATCGGATTATGACGTAATGTCTAATTtg > 1:2927139/1‑91 (MQ=255) aaaaaaGAAGCCCTCATTAATGGGAGCTTCTTTTTAGTCTTTGCATTTTATTTTATAAATAAATCGGATTATGACGTAATGTCTAATTtgt < 1:2527830/91‑1 (MQ=255) aaaaaaGAAGCCCTCATTAATGGGAGCTTCTTTTTAGTCTTTGCATTTTATTTTATAAATAAATCGGATTATGACGTAATGTCTAATTtgt < 1:2526866/91‑1 (MQ=255) aaaaGAAGCTCCCATTAATGAGGGCTTCTTTTTAGTCTTTGCATTTTATTTTATAAATAAATCGGATTATGACGTAATGTCTAATTTgtgt > 1:45642/1‑91 (MQ=37) aaaaGAAGCTCCCATTAATGAGGGCTTCTTTTTAGTCTTTGCATTTTATTTTATAAATAAATCGGATTATGACGTAATGTCTAATTTgtgt > 1:2667524/1‑91 (MQ=37) aaaGAAGCTCCCATTAATGAGGGCTTCTTTTTAGTCTTTGCATTTTATTTTATAAATAAATCGGATTATGACGTAATGTCTAATTTGTGTa > 1:2494021/1‑91 (MQ=37) agaagCCCTCATTAATGGGAGCTTCTTTTTAGTCTTTGCATTTTATTTTATAAATAAATCGGATTATGACGTAATGTCTAATTTGTGTAAt > 1:929841/1‑91 (MQ=255) gaagCCCTCATTAATGGGAGCTTCTTTTTAGTCTTTGCATTTTATTTTATAAATAAATCGGATTACGACGTAATGTCTAATTTGTGTAATg > 1:3847150/1‑91 (MQ=255) aagCTCCCATTAATGAGGGCTTCTTTTTAGTCTTTGCATTTTATTTTATAAATAAATCGGATTATGACGTAATGTCTAATTTGTGTAATGt > 1:2320111/1‑91 (MQ=38) aagCCCTCATTAATGGGAGCTTCTTTTTAGTCTTTGCATTTTATTTTATAAATAAATCGGATTATGACGTAATGTCTAATTTGTGTAATGt < 1:2331382/91‑1 (MQ=255) agCCCTCATTAATGGGAGCTTCTTTTTAGTCTTTGCATTTTATTTTATAAATAAATCGGATTATGACGTAATGTCTAATTTGTGTAATGtt > 1:1478149/1‑91 (MQ=255) agCCCTCATTAATGGGAGCTTCTTTTTAGTCTTTGCATTTTATTTTATAAATAAATCGGATTATGACGTAATGTCTAATTTGTGTAATGtt > 1:702688/1‑91 (MQ=255) agCCCTCATTAATGGGAGCTTCTTTTTAGTCTTTGCATTTTATTTTATAAATAAATCGGATTATGACGTAATGTCTAATTTGTGTAATGtt > 1:685368/1‑91 (MQ=255) agCCCTCATTAATGGGAGCTTCTTTTTAGTCTTTGCATTTTATTTTATAAATAAATCGGATTATGACGTAATGTCTAATTTGTGTAATGtt > 1:2870800/1‑91 (MQ=255) agCCCTCATTAATGGGAGCTTCTTTTTAGTCTTTGCATTTTATTTTATAAATAAATCGGATTATGACGTAATGTCTAATTTGTGTAATGtt < 1:2602243/91‑1 (MQ=255) agCCCTCATTAATGGGAGCTTCTTTTTAGTCTTTGCATTTTATTTTATAAATAAATCGGATTATGACGTAATGTCTAATTTGTGTAATGtt > 1:2595843/1‑91 (MQ=255) gCCCTCATTAATGGGAGCTTCTTTTTAGTCTTTGCATTTTATTTTATAAATAAATCGGATTATGACGTAATGTCTAATTTGTGTAATGTTa < 1:1335369/91‑1 (MQ=255) gCCCTCATTAATGGGAGCTTCTTTTTAGTCTTTGCATTTTATTTTATAAATAAATCGGATTATGACGTAATGTCTAATTTGTGTAATGTTa > 1:3154343/1‑91 (MQ=255) gCCCTCATTAATGGGAGCTTCTTTTTAGTCTTTGCATTTTATTTTATAAATAAATCGGATTATGACGTAATGTCTAATTTGTGTAATGTTa < 1:1334562/91‑1 (MQ=255) tcccATTAATGAGGGCTTCTTTTTAGTCTTTGCATTTTATTTTATAAATAAATCGGATTATGACGTAATGTCTAATTTGTGTAATGTTACa > 1:3818696/4‑91 (MQ=39) cccATTAATGAGGGCTTCTTTTTAGTCTTTGCATTTTATTTTATAAATAAATCGGATTATGACGTAATGTCTAATTTGTGTAATGTTACAg > 1:3252107/3‑91 (MQ=255) aTTAATGGGAGCTTCTTTTTAGTCTTTGCATTTTATTTTATAAATAAATCGGATTATGACGTAATGTCTAATTTGTGTAATGTTACAGTCa < 1:526130/91‑1 (MQ=255) aTTAATGGGAGCTTCTTTTTAGTCTTTGCATTTTATTTTATAAATAAATCGGATTATGACGTAATGTCTAATTTGTGTAATGTTACAGTCa < 1:458752/91‑1 (MQ=255) ttAATGGGAGCTTCTTTTTAGTCTTTGCATTTTATTTTATAAATAAATCGGATTATGACGTAATGTCTAATTTGTGTAATGTTACAGTCAt < 1:3325323/91‑1 (MQ=255) ttAATGAGGGCTTCTTTTTAGTCTTTGCATTTTATTTTATAAATAAATCGGATTATGACGTAATGTCTAATTTGTGTAATGTTACAGTCAt > 1:411564/1‑91 (MQ=255) tAATGGGAGCTTCTTTTTAGTCTTTGCATTTTATTTTATAAATAAATCGGATTATGACGTAATGTCTAATTTGTGTAATGTTACAGTCATc > 1:1439262/1‑91 (MQ=255) tAATGGGAGCTTCTTTTTAGTCTTTGCATTTTATTTTATAAATAAATCGGATTATGACGTAATGTCTAATTTGTGTAATGTTACAGTCATc > 1:1439506/1‑91 (MQ=255) aaTGGGAGCTTCTTTTTAGTCTTTGCATTTTATTTTATAAATAAATCGGATTATGACGTAATGTCTAATTTGTGTAATGTTACAGTCATCg < 1:1125506/91‑1 (MQ=255) aTGGGAGCTTCTTTTTAGTCTTTGCATTTTATTTTATAAATAAATCGGATTATGACGTAATGTCTAATTTGTGTAATGTTACAGTCATCGt > 1:2205011/1‑91 (MQ=255) aTGGGAGCTTCTTTTTAGTCTTTGCATTTTATTTTATAAATAAATCGGATTATGACGTAATGTCTAATTTGTGTAATGTTACAGTCATCGt > 1:2509998/1‑91 (MQ=255) aTGGGAGCTGCTTTTTAGTCTTTGCATTTTATTTTATAAATAAATCGGATTATGACGTAATGTCTAATTTGTGTAATGTTACAGTCATCGt < 1:3720563/91‑1 (MQ=255) gggAGCTTCTTTTTAGTCTTTGCATTTTATTTTATAAATAAATCGGATTATGACGTAATGTCTAATTTGTGTAATGTTACAGTCATCGTAg < 1:1858017/91‑1 (MQ=255) | AGCTACAAATCTTTCAAGTCTTGAAAATGATGAGAAGGATACCCATAAAGTTTATTCTAAATAAACAAAAAAAGAAGCCCTCATTAATGGGAGCTTCTTTTTAGTCTTTGCATTTTATTTTATAAATAAATCGGATTATGACGTAATGTCTAATTTGTGTAATGTTACAGTCATCGTAG > USA300TCH1516_ALE/779881‑780059 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |