Predicted mutation
evidence seq id position mutation freq annotation gene description
RA USA300TCH1516_ALE 792,942 A→T 5.5% intergenic (+27/‑250) ltaS → / → ettA Lipoteichoic acid synthase/Energy‑dependent translational throttle protein EttA

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*USA300TCH1516_ALE792,9420AT 5.5% 384.8 / 10.1 110intergenic (+27/‑250)ltaS/ettALipoteichoic acid synthase/Energy‑dependent translational throttle protein EttA
Reads supporting (aligned to +/- strand):  ref base A (33/71);  new base T (4/2);  total (37/73)
Fisher's exact test for biased strand distribution p-value = 1.76e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.83e-01

Only 100 of 123 total aligned reads displayed.

CAAAAAGGTAAATCCTTCGAAGTATAAATATGAAACAGGACCTAAAGCAAACTCTAAAAAATAATATCTAAACACGAACTCGGATTGATAAAATATCAATCCGGGTTTTTATTATGTTCTTTTATATTATGTTTTACATTATATGTGTTGATAAAAAGGTATATTATAAAGATCATTAGCA  >  USA300TCH1516_ALE/792852‑793032
                                                                                          |                                                                                          
cAAAAAGGTAAATCCTTCGAAGTATAAATATGAAACAGGACCTAAAGCAAACTCTAAAAAATAATATCTAAACACGAACTCGGATTGATaa                                                                                            <  1:431528/91‑1 (MQ=255)
cAAAAAGGTAAATCCTTCGAAGTATAAATATGAAACAGGACCTAAAGCAAACTCTAAAAAATAATATCTAAACACGAACTCGGATTGATaa                                                                                            <  1:1559040/91‑1 (MQ=255)
cAAAAAGGTAAATCCTTCGAAGTATAAATATGAAACAGGACCTAAAGCAAACTCTAAAAAATAATATCTAAACACGAACTCGGATTGATaa                                                                                            <  1:722829/91‑1 (MQ=255)
 aaaaaGGTAAATCCTTCGAAGTATAAATATGAAACAGGACCTAAAGCAAACTCTAAAAAATAATATCTAAACACGAACTCGGATTGATaaa                                                                                           <  1:1198113/91‑1 (MQ=255)
 aaaaaGGTAAATCCTTCGAAGTATAAATATGAAACAGGACCTAAAGCAAACTCTAAAAAATAATATCTAAACACGAACTCGGATTGATaaa                                                                                           <  1:1927053/91‑1 (MQ=255)
 aaaaaGGTAAATCCTTCGAAGTATAAATATGAAACAGGACCTAAAGCAAACTCTAAAAAATAATATCTAAACACGAACTCGGATTGATaaa                                                                                           <  1:312502/91‑1 (MQ=255)
  aaaaGGTAAATCCTTCGAAGTATAAATATGAAACAGGACCTAAAGCAAACTCTAAAAAATAATATCTAAACACGAACTCGGATTGATaaaa                                                                                          >  1:2698534/1‑91 (MQ=255)
  aaaaGGTAAATCCTTCGAAGTATAAATATGAAACAGGACCTAAAGCAAACTCGAAAAAATAATATCTAAACACGAACTCGGATTGATaaaa                                                                                          <  1:1162517/91‑1 (MQ=255)
   aaaGGTAAATCCTTCGAAGTATAAATATGAAACAGGACCTAAAGCAAACTCTAAAAAATAATATCTAAACACGAACTCGGATTGATAAAat                                                                                         <  1:1133456/91‑1 (MQ=255)
   aaaGGTAAATCCTTCGAAGTATAAATATGAAACAGGACCTAAAGCAAACTCTAAAAAATAATATCTAAACACGAACTCGGATTGATAAAat                                                                                         >  1:1598144/1‑91 (MQ=255)
   aaaGGTAAATCCTTCGAAGTATAAATATGAAACAGGACCTAAAGCAAACTCTAAAAAATAATATCTAAACACGAACTCGGATTGATAAAat                                                                                         <  1:397918/91‑1 (MQ=255)
    aaGGTAAATCCTTCGAAGTATAAATATGAAACAGGACCTAAAGCAAACTCTAAAAAATAATATCTAAACACGAACTCGGATTGATAAAata                                                                                        <  1:864654/91‑1 (MQ=255)
    aaGGTAAATCCTTCGAAGTATAAATATGAAACAGGACCTAAAGCAAACTCTAAAAAATAATATCTAAACACGAACTCGGATTGATAAAata                                                                                        <  1:3075112/91‑1 (MQ=255)
    aaGGTAAATCCTTCGAAGTATAAATATGAAACAGGACCTAAAGCAAACTCTAAAAAATAATATCTAAACACGAACTCGGATTGATAAAata                                                                                        <  1:1174676/91‑1 (MQ=255)
      ggTAAATCCTTCGAAGTATAAATATGAAACAGGACCTAAAGCAAACTCTAAAAAATAATATCTAAACACGAACTCGGATTGATAAAATATc                                                                                      <  1:2513749/91‑1 (MQ=255)
       gTAAATCCTTCGAAGTATAAATATGAAACAGGACCTAAAGCAAACTCTAAAAAATAATATTTAAACACGAACTCGGATTGATAAAATATCa                                                                                     >  1:3279343/1‑91 (MQ=255)
       gTAAATCCTTCGAAGTATAAATATGAAACAGGACCTAAAGCAAACTCTAAAAAATAATATCTAAACACGAACTCGGATTGATAAAATATCa                                                                                     >  1:3477197/1‑91 (MQ=255)
          aaTCCTTCGAAGTATAAATATGAAACAGGACCTAAAGCAAACTCTAAAAAATAATATCTAAACACGAACTCGGATTGATAAAATATCAATc                                                                                  <  1:1920456/91‑1 (MQ=255)
           aTCCTTCGAAGTATAAATATGAAACAGGACCTAAAGCAAACTCTAAAAAATAATATCTAAACACGAACTCGGATTGATAAAATATCAATcc                                                                                 <  1:422278/91‑1 (MQ=255)
           aTCCTTCGAAGTATAAATATGAAACAGGACCTAAAGCAAACTCTAAAAAATAATATCTAAACACGAACTCGGATTGATAAAATATCAATcc                                                                                 <  1:1073042/91‑1 (MQ=255)
            tCCTTCGAAGTATAAATATGAAACAGGACCTAAAGCAAACTCTAAAAAATAATATCTAAACACGAACTCGGATTGATAAAATATCAATCCg                                                                                >  1:466300/1‑91 (MQ=255)
             ccTTCGAAGTATAAATATGAAACAGGACCTAAAGCAAACTCTAAAAAATAATATCTAAACACGAACTCGGATTGATAAAATATCAATCCgg                                                                               <  1:1721443/91‑1 (MQ=255)
             ccTTCGAAGTATAAATATGAAACAGGACCTAAAGCAAACTCTAAAAAATAATATCTAAACACGAACTCGGATTGATAAAATATCAATCCgg                                                                               <  1:3093606/91‑1 (MQ=255)
                tCGAAGTATAAATATGAAACAGGACCTAAAGCAAACTCTAAAAAATAATATCTAAACACGAACCCGGATTGATATTTTATCAATCCGAGtt                                                                            <  1:546083/91‑1 (MQ=25)
                 cGAAGTATAAATATGAAACAGGACCTAAAGCAAACTCTAAAAAATAATATCTAAACACGAACTCGGATTGATAAAATATCAATCCGGGttt                                                                           <  1:2752841/91‑1 (MQ=255)
                  gAAGTATAAATGTGAAACAGGACCTAAAGCAAACTCTAAAAAATAATATCTAAACACGAACTCGGATTGATAAAATATCAATCCGGGtttt                                                                          <  1:3766200/91‑1 (MQ=255)
                   aaGTATAAATATGAAACAGGACCTAAAGCAAACTCTAAAAAATAATATCTAAACACGAACTCGGATTGATAAAATATCAATCCGGGttttt                                                                         <  1:1288403/91‑1 (MQ=255)
                   aaGTATAAATATGAAACAGGACCTAAAGCAAACTCTAAAAAATAATATCTAAACACGAACTCGGATTGATAAAATATCAATCCGGGttttt                                                                         <  1:1561805/91‑1 (MQ=255)
                    aGTATAAATATGAAACAGGACCTAAAGCAAACTCTAAAAAATAATATCTAAACACGAACTCGGATTGATAAAATATCAATCCGGGTTTtta                                                                        <  1:1498709/91‑1 (MQ=255)
                     gTATAAATATGAAACAGGACCTAAAGCAAACTCTAAAAAATAATATCTAAACACGAACTCGGATTGATAAAATATCAATCCGGGTTTttat                                                                       <  1:1957505/91‑1 (MQ=255)
                     gTATAAATATGAAACAGGACCTAAAGCAAACTCTAAAAAATAATATCTAAACACGAACTCGGATTGATAAAATATCAATCCGGGTTTttat                                                                       <  1:321946/91‑1 (MQ=255)
                     gTATAAATATGAAACAGGACCTAAAGCAAACTCTAAAAAATAATATCTAAACACGAACTCGGATTGATAAAATATCAATCCGGGTTTttat                                                                       <  1:2138239/91‑1 (MQ=255)
                      tataAATATGAAACAGGACCTAAAGCAAACTCTAAAAAATAATATCTAAACACGAACTCGGATTGATAAAATATCAATCCGGGTTTttatt                                                                      >  1:3696717/1‑91 (MQ=255)
                      tataAATATGAAACAGGACCTAAAGCAAACTCTAAAAAATAATATCTAAACACGAACTCGGATTGATAAAATATCAATCCGGGTTTttatt                                                                      <  1:3151251/91‑1 (MQ=255)
                      tataAATATGAAACAGGACCTAAAGCAAACTCTAAAAAATAATATCTAAACACGAACTCGGATTGATAAAATATCAATCCGGGTTTttatt                                                                      >  1:301154/1‑91 (MQ=255)
                       ataAATATGAAACAGGACCTAAAGCAAACTCTAAAAAATAATATCTAAACACGAACTCGGATTGATAAAATATCAATCCGGGTTTttatta                                                                     <  1:3013994/91‑1 (MQ=255)
                       ataAATATGAAACAGGACCTAAAGCAAACTCTAAAAAATAATATCTAAACACGAACGCGGATTGATAAAATATCAATCCGGGTTTttatta                                                                     <  1:539679/91‑1 (MQ=255)
                         aaaTATGAAACAGGACCTAAAGCAAACTCTAAAAAATAATATCTAAACACGAACTCGGATTGATAAAATATCAATCCGGGTTTTTATTATg                                                                   <  1:2864862/91‑1 (MQ=255)
                         aaaTATGAAACAGGACCTAAAGCAAACTCTAAAAAATAATATCTAAACACGAACTCGGATTGATAAAATATCAATCCGGGTTTTTATTATg                                                                   <  1:504078/91‑1 (MQ=255)
                         aaaTATGAAACAGGACCTAAAGCAAACTCTAAAAAATAATATCTAAACACGAACTCGGATTGATAAAATATCAATCCGGGTTTTTATTATg                                                                   <  1:2559094/91‑1 (MQ=255)
                         aaaTATGAAACAGGACCTAAAGCAAACTCTAAAAAATAATATCTAAACACGAACTCGGATTGATAAAATATCAATCCGGGTTTTTATTATg                                                                   <  1:2298371/91‑1 (MQ=255)
                         aaaTATGAAACAGGACCTAAAGCAAACTCTAAAAAATAATATCTAAACACGAACTCGGATTGATAAAATATCAATCCGGGTTTTTATTATg                                                                   <  1:505571/91‑1 (MQ=255)
                          aaTATGAAACAGGACCTAAAGCAAACTCTAAAAAATAATATCTAAACACGAACTCGGATTGATAAAATATCAATCCGGGTTTTTATTATGt                                                                  >  1:2476421/1‑91 (MQ=255)
                          aaTATGAAACAGGACCTAAAGCAAACTCTAAAAAATAATATCTAAACACGAACTCGGATTGATAAAATATCAATCCGGGTTTTTATTATGt                                                                  >  1:3331052/1‑91 (MQ=255)
                            tatGAAACAGGACCTAAAGCAAACTCTAAAAAATAATATCTAAACACGAACTCGGATTGATAAAATATCAATCCGGGTTTTTATTATGTTc                                                                >  1:2682321/1‑91 (MQ=255)
                            tatGAAACAGGACCTAAAGCAAACTCTAAAAAATAATATCTAAACACGAACTCGGATTGATAAAATATCAATCCGGGTTTTTATTATGTTc                                                                >  1:561483/1‑91 (MQ=255)
                                 aaCAGGACCTAAAGCAAACTCTAAAAAATAATATCTAAACACGAACTCGGATTGATAAAATATCAATCCGGGTTTTTATTATGTTCTTTta                                                           >  1:2552881/1‑91 (MQ=255)
                                  aCAGGCCCTAAAGCAAACTCTAAAAAATAATATCTAAACACGAACTCGGATTGATAAAATATCAATCCGGGTTTTTATTATGTTCTTTtat                                                          <  1:2440064/91‑1 (MQ=255)
                                    aGGACCTAAAGCAAACTCTAAAAAATAATATCTAAACACGAACTCGGATTGATAAAATATCAATCCGGGTTTTTATTATGTTCTTTTatat                                                        >  1:855260/1‑91 (MQ=255)
                                    aGGACCTAAAGCAAACTCTAAAAAATAATATCTAAACACGAACTCGGATTGATAAAATATCAATCCGGGTTTTTATTATGTTCTTTTatat                                                        >  1:855809/1‑91 (MQ=255)
                                         cTAAAGCAAACTCTAAAAAATAATATCTAAACACGAACTCGGATTGATAAAATATCAATCCGGGTTTTTATTATGTTCTTTTATATTATGt                                                   <  1:2845845/91‑1 (MQ=255)
                                           aaaGCAAACTCTAAAAAATAATATCTAAACACGAACTCGGATTGATAAAATATCAATCCGGGTTTTTATTATGTTCTTTTATATTATGttt                                                 >  1:3242532/1‑91 (MQ=255)
                                            aaGCAAACTCTAAAAAATAATATCTAAACACGAACTCGGATTGATAAAATATCAATCCGGGTTTTTATTATGTTCTTTTATATTATGtttt                                                <  1:3670451/91‑1 (MQ=255)
                                            aaGCAAACTCTAAAAAATAATATCTAAACACGAACTCGGATTGATAAAATATCAATCCGGGTTTTTATTATGTTCTTTTATATTATGtttt                                                >  1:916421/1‑91 (MQ=255)
                                                 aaCTCTAAAAAATAATATCTAAACACGAACTCGGATTGATAAAATATCAATCCGGGTTTTTATTATGTTCTTTTATATTATGTTTTACAtt                                           >  1:1770610/1‑91 (MQ=255)
                                                 aaCTCTAAAAAATAATATCTAAACACGAACTCGGATTGATAAAATATCAATCCGGGTTTTTATTATGTTCTTTTATATTATGTTTTACAtt                                           <  1:2016115/91‑1 (MQ=255)
                                                 aaCTCTAAAAAATAATATCTAAACACGAACTCGGATTGATAAAATATCAATCCGGGTTTTTATTATGTTCTTTTATATTATGTTTTACAtt                                           >  1:59060/1‑91 (MQ=255)
                                                 aaCTCTAAAAAATAATATCTAAACACGAACTCGGATTGATAAAATATCAATCCGGGTTTTTATTATGTTCTTTTATATTATGTTTTACAtt                                           >  1:60363/1‑91 (MQ=255)
                                                  aCTCTAAAAAATAATATCTAAACACGAACTCGGATTGATAAAATATCAATCCGGGTTTTTATTATGTTCTTTTATATTATGTTTTACATta                                          <  1:3827426/91‑1 (MQ=255)
                                                    tctAAAAAATAATATCTAAACACGAACTCGGATTGATAAAATATCAATCCGGGTTTTTATTATGTTCTTTTATATTATGTTTTACATtata                                        <  1:2347727/91‑1 (MQ=255)
                                                      tAAAAAATAATATCTAAACACGAACTCGGATTGATAAAATATCAATCCGGGTTTTTATTATGTTCTTTTATATTATGTTTTACATTATAtg                                      >  1:2994988/1‑91 (MQ=255)
                                                      tAAAAAATAATATCTAAACACGAACTCGGATTGATAAAATATCAATCCGGGTTTTTATTATGTTCTTTTATATTATGTTTTACATTATAtg                                      >  1:749249/1‑91 (MQ=255)
                                                       aaaaaaTAATATCTAAACACGAACTCGGACTGATAAAATATCAATCCGGGTTTTTATTATGTTCTTTTATATTATGTTTTACATTATAtgt                                     >  1:1766629/1‑91 (MQ=255)
                                                        aaaaaTAATATCTAAACACGAACTCGGATTGATAAAATATCAATCCGGGTTTTTATTATGTTCTTTTATATTATGTTTTACATTATAtgtg                                    >  1:625333/1‑91 (MQ=255)
                                                        aaaaaTAATATCTAAACACGAACTCGGATTGATAAAATATCAATCCGGGTTTTTATTATGTTCTTTTATATTATGTTTTACATTATAtgtg                                    <  1:260504/91‑1 (MQ=255)
                                                        aaaaaTAATATCTAAACACGAACTCGGATTGATAAAATATCAATCCGGGTTTTTATTATGTTCTTTTATATTATGTTTTACATTATAtgtg                                    <  1:1496517/91‑1 (MQ=255)
                                                         aaaaTAATATCTAAACACGAACTCGGATTGATAAAATATCAATCCGGGTTTTTATTATGTTCTTTTATATTATGTTTTACATTATATgtgt                                   <  1:1280195/91‑1 (MQ=255)
                                                         aaaaTAATATCTAAACACGAACTCGGATTGATAAAATATCAATCCGGGTTTTTATTATGTTCTTTTATATTATGTTTTACATTATATgtgt                                   <  1:2847340/91‑1 (MQ=255)
                                                            ataataTCTAAACACGAACTCGGATTGATAAAATATCAATCCGGGTTTTTATTATGTTCTTTTATATTATGTTTTACATTATATGTGTTGa                                <  1:1620195/91‑1 (MQ=255)
                                                               atatCTAAACACGAACTCGGATTGATAAAATATCAATCCGGGTTTTTATTATGTTCTTTTATATTATGTTTTACATTATATGTGTTGATaa                             <  1:1839599/91‑1 (MQ=255)
                                                                tatCTAAACACGAACTCGGATTGATAAAATATCAATCCGGGTTTTTATTATGTTCTTTTATATTATGTTTTACATTATGTGTGTTGATaaa                            <  1:3200205/91‑1 (MQ=255)
                                                                tatCTAAACACGAACTCGGATTGATAAAATATCAATCCGGGTTTTTATTATGTTCTTTTATATTATGTTTTACATTATATGTGTTGATaaa                            <  1:1479037/91‑1 (MQ=255)
                                                                 atCTAAACACGAACTCGGATTGATAAAATATCAATCCGGGTTTTTATTATGTTCTTTTATATTATGTTTTACATTATATGTGTTGATaaaa                           <  1:1707033/91‑1 (MQ=255)
                                                                  tCTAAACACGAACTCGGATTGATAAAATATCAATCCGGGTTTTTATTATGTTCTTTTATATTATGTTTTACATTATATTTGTTGATaaaaa                          <  1:3173036/91‑1 (MQ=255)
                                                                  tCTAAACACGAACTCGGATTGATAAAATATCAATCCGGGTTTTTATTATGTTCTTTTATATTATGTTTTACATTATATGTGTTGATaaaaa                          <  1:2448777/91‑1 (MQ=255)
                                                                     aaaCACGAACTCGGATTGATAAAATATCAATCCGGGTTTTTATTATGTTCTTTTATATTATGTTTTACATTATATGTGTTGATAAAAAGGt                       <  1:545859/91‑1 (MQ=255)
                                                                      aaCACGAACTCGGATTGCTAAAATATCAATCCGGGTTTTTATTATGTTCTTTTATATTATGTTTTACATTATATGTGTTGATAAAAAGGta                      <  1:3553285/91‑1 (MQ=255)
                                                                      aaCACGAACTCGGATTGATAAAATATCAATCCGGGTTTTTATTATGTTCTTTTATATTATGTTTTACATTATATGTGTTGATAAAAAGGta                      <  1:4130878/91‑1 (MQ=255)
                                                                      aaCACGAACTCGGATTGATAAAATATCAATCCGGGTTTTTATTATGTTCTTTTATATTATGTTTTACATTATATGTGTTGATAAAAAGGta                      <  1:2893314/91‑1 (MQ=255)
                                                                      aaCACGAACTCGGATTGATAAAATATCAATCCGGGTTTTTATTATGTTCTTTTATATTATGTTTTACATTATATGTGTTGATAAAAAGGta                      <  1:3637233/91‑1 (MQ=255)
                                                                      aaCACGAACTCGGATTGATAAAATATCAATCCGGGTTTTTATTATGTTCTTTTATATTATGTTTTACATTATATGTGTTGATAAAAAGGta                      <  1:2217930/91‑1 (MQ=255)
                                                                        cacGAACTCGGATTGATAAAATATCAATCCGGGTTTTTATTATGTTCTTTTATATTATGTTTTACATTATATGTGTTGATAAAAAGGtata                    <  1:2862073/91‑1 (MQ=255)
                                                                         acGAACTCGGATTGATAAAATATCAATCCGGGTTTTTATTATGTTCTTTTATATTATGTTTTACATTATATGTGTTGATAAAAAGGTatat                   <  1:2780464/91‑1 (MQ=255)
                                                                             aCTCGGATTGATAAAATATCAATCCGGGTTTTTATTATGTTCTTTTATATTATGTTTTACATTATATGTGTCGATAAAAAGGTATATtata               >  1:255145/1‑91 (MQ=255)
                                                                              cccGGATTGATATTTTATCAATCCGAGTTTTTATTATGTTCTTTTATATTATGTTTTACATTATATGTGTTGATAAAAAGGTATATTATaa              >  1:1647420/3‑91 (MQ=37)
                                                                              cTCGGATTGATAAAATATCAATCCGGGTTTTTATTATGTTCTTTTATATTATGTTTTACATTATATGTGTTGATAAAAAGGTATATTATaa              <  1:1283089/91‑1 (MQ=255)
                                                                              cTCGGATTGATAAAATATCAATCCGGGTTTTTATTATGTTCTTTTATATTATGTTTTACATTATATGTGTTGATAAAAAGGTATATTATaa              <  1:1306092/91‑1 (MQ=255)
                                                                              cTCGGATTGATAAAATATCAATCCGGGTTTTTATTATGTTCTTTTATATTATGTTTTACATTATATGTGTTGATAAAAAGGTATATTATaa              >  1:318766/1‑91 (MQ=255)
                                                                              cTCGGATTGATAAAATATCAATCCGGGTTTTTATTATGTTCTTTTATATTATGTTTTACATTATATGTGTTGATAAAAAGGTATATTATaa              <  1:3634649/91‑1 (MQ=255)
                                                                              cTCGGATTGATAAAATATCAATCCGGGTTTTTATTATGTTCTTTTATATTATGTTTTACATTATATGTGTTGATAAAAAGGTATATTATaa              >  1:1773087/1‑91 (MQ=255)
                                                                               tCGGATTGATAAAATATCAATCCGGGTTTTTATTATGTTCTTTTATATTATGTTTTACATTATATGTGTTGATAAAAAGGTATATTATaaa             >  1:2491478/1‑91 (MQ=255)
                                                                               ccGGATTGATATTTTATCAATCCGAGTTTTTATTATGTTCTTTTATATTATGTTTTACATTATATGTGTTGATAAAAAGGTATATTATaaa             >  1:3244475/2‑91 (MQ=37)
                                                                               ccGGATTGATATTTTATCAATCCGAGTTTTTATTATGTTCTTTTATATTATGTTTTACATTATATGTGTTGATAAAAAGGTATATTATaaa             >  1:537063/2‑91 (MQ=37)
                                                                                cGGATTGATAAAATATCAATCCGGGTTTTTATTATGTTCTTTTATATTATGTTTTACATTATATGTGTTGATAAAAAGGTATATTATAAAg            <  1:367339/91‑1 (MQ=255)
                                                                                cGGATTGATAAAATATCAATCCGGGTTTTTATTATGTTCTTTTATATTATGTTTTACATTATATGTGTTGATAAAAAGGTATATTATAAAg            <  1:1454594/91‑1 (MQ=255)
                                                                                   aTTGATAAAATATCAATCCGGGTTTTTATTATGTTCTTTTATATTATGTTTTACATTATATGTGTTGATAAAAAGGTATATTATAAAGATc         <  1:3265860/91‑1 (MQ=255)
                                                                                   aTTGATAAAATATCAATCCGGGTTTTTATTATGTTCTTTTATATTATGTTTTACATTATATGTGTTGATAAAAAGGTATATTATAAAGATc         <  1:3264593/91‑1 (MQ=255)
                                                                                      gATAAAATATCAATCCGGGTTTTTATTATGTTCTTTTATATTATGTTTTACATTATATGTGTTGATAAAAAGGTATATTATAAAGATCAtt      >  1:1597123/1‑91 (MQ=255)
                                                                                        tAAAATATCAATCCGGGTTTTTATTATGTTCTTTTATATTATGTTTTACATTATATGTGTTGATAAAAAGGTATATTATAAAGATCATTAg    <  1:1811458/91‑1 (MQ=255)
                                                                                          aaaTATCAATCCGGGTTTTTATTATGTTCTTTTATATTATGTTTTACATTATATGTGTTGATAAAAAGGTATATTATAAAGATCATTAGCa  >  1:1580616/1‑91 (MQ=255)
                                                                                          |                                                                                          
CAAAAAGGTAAATCCTTCGAAGTATAAATATGAAACAGGACCTAAAGCAAACTCTAAAAAATAATATCTAAACACGAACTCGGATTGATAAAATATCAATCCGGGTTTTTATTATGTTCTTTTATATTATGTTTTACATTATATGTGTTGATAAAAAGGTATATTATAAAGATCATTAGCA  >  USA300TCH1516_ALE/792852‑793032

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: