Predicted mutation
evidence seq id position mutation freq annotation gene description
RA USA300TCH1516_ALE 792,943 A→T 5.5% intergenic (+28/‑249) ltaS → / → ettA Lipoteichoic acid synthase/Energy‑dependent translational throttle protein EttA

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*USA300TCH1516_ALE792,9430AT 5.5% 387.0 / 10.1 110intergenic (+28/‑249)ltaS/ettALipoteichoic acid synthase/Energy‑dependent translational throttle protein EttA
Reads supporting (aligned to +/- strand):  ref base A (33/71);  new base T (4/2);  total (37/73)
Fisher's exact test for biased strand distribution p-value = 1.76e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.91e-01

Only 100 of 120 total aligned reads displayed.

AAAAAGGTAAATCCTTCGAAGTATAAATATGAAACAGGACCTAAAGCAAACTCTAAAAAATAATATCTAAACACGAACTCGGATTGATAAAATATCAATCCGGGTTTTTATTATGTTCTTTTATATTATGTTTTACATTATATGTGTTGATAAAAAGGTATATTATAAAGATCATTAGCAT  >  USA300TCH1516_ALE/792853‑793033
                                                                                          |                                                                                          
aaaaaGGTAAATCCTTCGAAGTATAAATATGAAACAGGACCTAAAGCAAACTCTAAAAAATAATATCTAAACACGAACTCGGATTGATaaa                                                                                            <  1:1927053/91‑1 (MQ=255)
aaaaaGGTAAATCCTTCGAAGTATAAATATGAAACAGGACCTAAAGCAAACTCTAAAAAATAATATCTAAACACGAACTCGGATTGATaaa                                                                                            <  1:1198113/91‑1 (MQ=255)
aaaaaGGTAAATCCTTCGAAGTATAAATATGAAACAGGACCTAAAGCAAACTCTAAAAAATAATATCTAAACACGAACTCGGATTGATaaa                                                                                            <  1:312502/91‑1 (MQ=255)
 aaaaGGTAAATCCTTCGAAGTATAAATATGAAACAGGACCTAAAGCAAACTCTAAAAAATAATATCTAAACACGAACTCGGATTGATaaaa                                                                                           >  1:208411/1‑91 (MQ=255)
 aaaaGGTAAATCCTTCGAAGTATAAATATGAAACAGGACCTAAAGCAAACTCTAAAAAATAATATCTAAACACGAACTCGGATTGATaaaa                                                                                           >  1:2698534/1‑91 (MQ=255)
 aaaaGGTAAATCCTTCGAAGTATAAATATGAAACAGGACCTAAAGCAAACTCGAAAAAATAATATCTAAACACGAACTCGGATTGATaaaa                                                                                           <  1:1162517/91‑1 (MQ=255)
  aaaGGTAAATCCTTCGAAGTATAAATATGAAACAGGACCTAAAGCAAACTCTAAAAAATAATATCTAAACACGAACTCGGATTGATAAAat                                                                                          <  1:397918/91‑1 (MQ=255)
  aaaGGTAAATCCTTCGAAGTATAAATATGAAACAGGACCTAAAGCAAACTCTAAAAAATAATATCTAAACACGAACTCGGATTGATAAAat                                                                                          >  1:1598144/1‑91 (MQ=255)
  aaaGGTAAATCCTTCGAAGTATAAATATGAAACAGGACCTAAAGCAAACTCTAAAAAATAATATCTAAACACGAACTCGGATTGATAAAat                                                                                          <  1:1133456/91‑1 (MQ=255)
   aaGGTAAATCCTTCGAAGTATAAATATGAAACAGGACCTAAAGCAAACTCTAAAAAATAATATCTAAACACGAACTCGGATTGATAAAata                                                                                         <  1:3075112/91‑1 (MQ=255)
   aaGGTAAATCCTTCGAAGTATAAATATGAAACAGGACCTAAAGCAAACTCTAAAAAATAATATCTAAACACGAACTCGGATTGATAAAata                                                                                         <  1:864654/91‑1 (MQ=255)
   aaGGTAAATCCTTCGAAGTATAAATATGAAACAGGACCTAAAGCAAACTCTAAAAAATAATATCTAAACACGAACTCGGATTGATAAAata                                                                                         <  1:1174676/91‑1 (MQ=255)
     ggTAAATCCTTCGAAGTATAAATATGAAACAGGACCTAAAGCAAACTCTAAAAAATAATATCTAAACACGAACTCGGATTGATAAAATATc                                                                                       <  1:2513749/91‑1 (MQ=255)
     ggTAAATCCTTCGAAGTATAAATATGAAACAGGACCTAAAGCAAACTCTAAAAAATAATATCTAAACACGAACTCGGATTGATAAAATATc                                                                                       >  1:3175557/1‑91 (MQ=255)
      gTAAATCCTTCGAAGTATAAATATGAAACAGGACCTAAAGCAAACTCTAAAAAATAATATTTAAACACGAACTCGGATTGATAAAATATCa                                                                                      >  1:3279343/1‑91 (MQ=255)
      gTAAATCCTTCGAAGTATAAATATGAAACAGGACCTAAAGCAAACTCTAAAAAATAATATCTAAACACGAACTCGGATTGATAAAATATCa                                                                                      >  1:3477197/1‑91 (MQ=255)
         aaTCCTTCGAAGTATAAATATGAAACAGGACCTAAAGCAAACTCTAAAAAATAATATCTAAACACGAACTCGGATTGATAAAATATCAATc                                                                                   <  1:1920456/91‑1 (MQ=255)
          aTCCTTCGAAGTATAAATATGAAACAGGACCTAAAGCAAACTCTAAAAAATAATATCTAAACACGAACTCGGATTGATAAAATATCAATcc                                                                                  <  1:1073042/91‑1 (MQ=255)
          aTCCTTCGAAGTATAAATATGAAACAGGACCTAAAGCAAACTCTAAAAAATAATATCTAAACACGAACTCGGATTGATAAAATATCAATcc                                                                                  <  1:422278/91‑1 (MQ=255)
           tCCTTCGAAGTATAAATATGAAACAGGACCTAAAGCAAACTCTAAAAAATAATATCTAAACACGAACTCGGATTGATAAAATATCAATCCg                                                                                 >  1:466300/1‑91 (MQ=255)
           tCCTTCGAAGTATAAATATGAAACAGGACCTAAAGCAAACTCTAAAAAATAATATCTAAACACGAACCCGGATTGATATTTTATCAATCCg                                                                                 <  1:1902475/91‑1 (MQ=38)
            ccTTCGAAGTATAAATATGAAACAGGACCTAAAGCAAACTCTAAAAAATAATATCTAAACACGAACTCGGATTGATAAAATATCAATCCgg                                                                                <  1:3093606/91‑1 (MQ=255)
            ccTTCGAAGTATAAATATGAAACAGGACCTAAAGCAAACTCTAAAAAATAATATCTAAACACGAACTCGGATTGATAAAATATCAATCCgg                                                                                <  1:2982787/91‑1 (MQ=255)
                cGAAGTATAAATATGAAACAGGACCTAAAGCAAACTCTAAAAAATAATATCTAAACACGAACTCGGATTGATAAAATATCAATCCGGGttt                                                                            <  1:2752841/91‑1 (MQ=255)
                 gAAGTATAAATGTGAAACAGGACCTAAAGCAAACTCTAAAAAATAATATCTAAACACGAACTCGGATTGATAAAATATCAATCCGGGtttt                                                                           <  1:3766200/91‑1 (MQ=255)
                  aaGTATAAATATGAAACAGGACCTAAAGCAAACTCTAAAAAATAATATCTAAACACGAACTCGGATTGATAAAATATCAATCCGGGttttt                                                                          <  1:1288403/91‑1 (MQ=255)
                  aaGTATAAATATGAAACAGGACCTAAAGCAAACTCTAAAAAATAATATCTAAACACGAACTCGGATTGATAAAATATCAATCCGGGttttt                                                                          <  1:1561805/91‑1 (MQ=255)
                   aGTATAAATATGAAACAGGACCTAAAGCAAACTCTAAAAAATAATATCTAAACACGAACTCGGATTGATAAAATATCAATCCGGGTTTtta                                                                         <  1:1498709/91‑1 (MQ=255)
                    gTATAAATATGAAACAGGACCTAAAGCAAACTCTAAAAAATAATATCTAAACACGAACTCGGATTGATAAAATATCAATCCGGGTTTttat                                                                        <  1:321946/91‑1 (MQ=255)
                    gTATAAATATGAAACAGGACCTAAAGCAAACTCTAAAAAATAATATCTAAACACGAACTCGGATTGATAAAATATCAATCCGGGTTTttat                                                                        <  1:1957505/91‑1 (MQ=255)
                    gTATAAATATGAAACAGGACCTAAAGCAAACTCTAAAAAATAATATCTAAACACGAACTCGGATTGATAAAATATCAATCCGGGTTTttat                                                                        <  1:2138239/91‑1 (MQ=255)
                     tataAATATGAAACAGGACCTAAAGCAAACTCTAAAAAATAATATCTAAACACGAACTCGGATTGATAAAATATCAATCCGGGTTTttatt                                                                       >  1:3696717/1‑91 (MQ=255)
                      ataAATATGAAACAGGACCTAAAGCAAACTCTAAAAAATAATATCTAAACACGAACTCGGATTGATAAAATATCAATCCGGGTTTttatta                                                                      <  1:3013994/91‑1 (MQ=255)
                      ataAATATGAAACAGGACCTAAAGCAAACTCTAAAAAATAATATCTAAACACGAACGCGGATTGATAAAATATCAATCCGGGTTTttatta                                                                      <  1:539679/91‑1 (MQ=255)
                        aaaTATGAAACAGGACCTAAAGCAAACTCTAAAAAATAATATCTAAACACGAACTCGGATTGATAAAATATCAATCCGGGTTTTTATTATg                                                                    <  1:2298371/91‑1 (MQ=255)
                        aaaTATGAAACAGGACCTAAAGCAAACTCTAAAAAATAATATCTAAACACGAACTCGGATTGATAAAATATCAATCCGGGTTTTTATTATg                                                                    <  1:505571/91‑1 (MQ=255)
                        aaaTATGAAACAGGACCTAAAGCAAACTCTAAAAAATAATATCTAAACACGAACTCGGATTGATAAAATATCAATCCGGGTTTTTATTATg                                                                    <  1:2864862/91‑1 (MQ=255)
                        aaaTATGAAACAGGACCTAAAGCAAACTCTAAAAAATAATATCTAAACACGAACTCGGATTGATAAAATATCAATCCGGGTTTTTATTATg                                                                    <  1:2559094/91‑1 (MQ=255)
                         aaTATGAAACAGGACCTAAAGCAAACTCTAAAAAATAATATCTAAACACGAACTCGGATTGATAAAATATCAATCCGGGTTTTTATTATGt                                                                   >  1:3331426/1‑91 (MQ=255)
                         aaTATGAAACAGGACCTAAAGCAAACTCTAAAAAATAATATCTAAACACGAACTCGGATTGATAAAATATCAATCCGGGTTTTTATTATGt                                                                   >  1:2476421/1‑91 (MQ=255)
                           tatGAAACAGGACCTAAAGCAAACTCTAAAAAATAATATCTAAACACGAACTCGGATTGATAAAATATCAATCCGGGTTTTTATTATGTTc                                                                 >  1:561483/1‑91 (MQ=255)
                                aaCAGGACCTAAAGCAAACTCTAAAAAATAATATCTAAACACGAACTCGGATTGATAAAATATCAATCCGGGTTTTTATTATGTTCTTTta                                                            >  1:2552881/1‑91 (MQ=255)
                                 aCAGGCCCTAAAGCAAACTCTAAAAAATAATATCTAAACACGAACTCGGATTGATAAAATATCAATCCGGGTTTTTATTATGTTCTTTtat                                                           <  1:2440064/91‑1 (MQ=255)
                                   aGGACCTAAAGCAAACTCTAAAAAATAATATCTAAACACGAACTCGGATTGATAAAATATCAATCCGGGTTTTTATTATGTTCTTTTatat                                                         >  1:855809/1‑91 (MQ=255)
                                   aGGACCTAAAGCAAACTCTAAAAAATAATATCTAAACACGAACTCGGATTGATAAAATATCAATCCGGGTTTTTATTATGTTCTTTTatat                                                         >  1:855260/1‑91 (MQ=255)
                                     aaCCTAAAGCAAACTCTAAATAATAATATCTAAACACGAACTCGGATTGATAAAATATCAATCCGGGTTTTTATTATGTTCTTTTAtatta                                                       <  1:459727/90‑1 (MQ=255)
                                       ccTAAAGCAAACTCTAAAAAATAATATCTAAACACGAACTCGGATTGATAAAATATCAATCCGGGTTTTTATTATGTTCTTTTATATTATg                                                     <  1:1407346/91‑1 (MQ=255)
                                        cTAAAGCAAACTCTAAAAAATAATATCTAAACACGAACTCGGATTGATAAAATATCAATCCGGGTTTTTATTATGTTCTTTTATATTATGt                                                    <  1:2845845/91‑1 (MQ=255)
                                           aaGCAAACTCTAAAAAATAATATCTAAACACGAACTCGGATTGATAAAATATCAATCCGGGTTTTTATTATGTTCTTTTATATTATGtttt                                                 >  1:916421/1‑91 (MQ=255)
                                           aaGCAAACTCTAAAAAATAATATCTAAACACGAACTCGGATTGATAAAATATCAATCCGGGTTTTTATTATGTTCTTTTATATTATGtttt                                                 <  1:3670451/91‑1 (MQ=255)
                                             gCAAACTCTAAAAAATAATATCTAAACACGAACTCGGATTGATAAAATATCAATCCGGGTTTTTATTATGTTCTTTTATATTATGTTTTAc                                               <  1:538779/91‑1 (MQ=255)
                                                aaCTCTAAAAAATAATATCTAAACACGAACTCGGATTGATAAAATATCAATCCGGGTTTTTATTATGTTCTTTTATATTATGTTTTACAtt                                            >  1:1770610/1‑91 (MQ=255)
                                                aaCTCTAAAAAATAATATCTAAACACGAACTCGGATTGATAAAATATCAATCCGGGTTTTTATTATGTTCTTTTATATTATGTTTTACAtt                                            >  1:59060/1‑91 (MQ=255)
                                                aaCTCTAAAAAATAATATCTAAACACGAACTCGGATTGATAAAATATCAATCCGGGTTTTTATTATGTTCTTTTATATTATGTTTTACAtt                                            >  1:59607/1‑91 (MQ=255)
                                                aaCTCTAAAAAATAATATCTAAACACGAACTCGGATTGATAAAATATCAATCCGGGTTTTTATTATGTTCTTTTATATTATGTTTTACAtt                                            >  1:60363/1‑91 (MQ=255)
                                                 aCTCTAAAAAATAATATCTAAACACGAACTCGGATTGATAAAATATCAATCCGGGTTTTTATTATGTTCTTTTATATTATGTTTTACATta                                           <  1:3827426/91‑1 (MQ=255)
                                                   tctAAAAAATAATATCTAAACACGAACTCGGATTGATAAAATATCAATCCGGGTTTTTATTATGTTCTTTTATATTATGTTTTACATtata                                         <  1:2347727/91‑1 (MQ=255)
                                                     tAAAAAATAATATCTAAACACGAACTCGGATTGATAAAATATCAATCCGGGTTTTTATTATGTTCTTTTATATTATGTTTTACATTATAtg                                       >  1:2994988/1‑91 (MQ=255)
                                                      aaaaaaTAATATCTAAACACGAACTCGGACTGATAAAATATCAATCCGGGTTTTTATTATGTTCTTTTATATTATGTTTTACATTATAtgt                                      >  1:1766629/1‑91 (MQ=255)
                                                       aaaaaTAATATCTAAACACGAACTCGGATTGATAAAATATCAATCCGGGTTTTTATTATGTTCTTTTATATTATGTTTTACATTATAtgtg                                     <  1:260504/91‑1 (MQ=255)
                                                       aaaaaTAATATCTAAACACGAACTCGGATTGATAAAATATCAATCCGGGTTTTTATTATGTTCTTTTATATTATGTTTTACATTATAtgtg                                     <  1:1496517/91‑1 (MQ=255)
                                                       aaaaaTAATATCTAAACACGAACTCGGATTGATAAAATATCAATCCGGGTTTTTATTATGTTCTTTTATATTATGTTTTACATTATAtgtg                                     >  1:625333/1‑91 (MQ=255)
                                                        aaaaTAATATCTAAACACGAACTCGGATTGATAAAATATCAATCCGGGTTTTTATTATGTTCTTTTATATTATGTTTTACATTATATgtgt                                    <  1:1280195/91‑1 (MQ=255)
                                                           ataataTCTAAACACGAACTCGGATTGATAAAATATCAATCCGGGTTTTTATTATGTTCTTTTATATTATGTTTTACATTATATGTGTTGa                                 <  1:1620127/91‑1 (MQ=255)
                                                           ataataTCTAAACACGAACTCGGATTGATAAAATATCAATCCGGGTTTTTATTATGTTCTTTTATATTATGTTTTACATTATATGTGTTGa                                 <  1:1620195/91‑1 (MQ=255)
                                                               tatCTAAACACGAACTCGGATTGATAAAATATCAATCCGGGTTTTTATTATGTTCTTTTATATTATGTTTTACATTATGTGTGTTGATaaa                             <  1:3200205/91‑1 (MQ=255)
                                                               tatCTAAACACGAACTCGGATTGATAAAATATCAATCCGGGTTTTTATTATGTTCTTTTATATTATGTTTTACATTATATGTGTTGATaaa                             <  1:1479037/91‑1 (MQ=255)
                                                                atCTAAACACGAACTCGGATTGATAAAATATCAATCCGGGTTTTTATTATGTTCTTTTATATTATGTTTTACATTATATGTGTTGATaaaa                            <  1:1707033/91‑1 (MQ=255)
                                                                 tCTAAACACGAACTCGGATTGATAAAATATCAATCCGGGTTTTTATTATGTTCTTTTATATTATGTTTTACATTATATTTGTTGATaaaaa                           <  1:3173036/91‑1 (MQ=255)
                                                                 tCTAAACACGAACTCGGATTGATAAAATATCAATCCGGGTTTTTATTATGTTCTTTTATATTATGTTTTACATTATATGTGTTGATaaaaa                           <  1:2448777/91‑1 (MQ=255)
                                                                    aaaCACGAACTCGGATTGATAAAATATCAATCCGGGTTTTTATTATGTTCTTTTATATTATGTTTTACATTATATGTGTTGATAAAAAGGt                        <  1:545859/91‑1 (MQ=255)
                                                                     aaCACGAACTCGGATTGCTAAAATATCAATCCGGGTTTTTATTATGTTCTTTTATATTATGTTTTACATTATATGTGTTGATAAAAAGGta                       <  1:3553285/91‑1 (MQ=255)
                                                                     aaCACGAACTCGGATTGATAAAATATCAATCCGGGTTTTTATTATGTTCTTTTATATTATGTTTTACATTATATGTGTTGATAAAAAGGta                       <  1:2217930/91‑1 (MQ=255)
                                                                     aaCACGAACTCGGATTGATAAAATATCAATCCGGGTTTTTATTATGTTCTTTTATATTATGTTTTACATTATATGTGTTGATAAAAAGGta                       <  1:2893314/91‑1 (MQ=255)
                                                                     aaCACGAACTCGGATTGATAAAATATCAATCCGGGTTTTTATTATGTTCTTTTATATTATGTTTTACATTATATGTGTTGATAAAAAGGta                       <  1:4130878/91‑1 (MQ=255)
                                                                     aaCACGAACTCGGATTGATAAAATATCAATCCGGGTTTTTATTATGTTCTTTTATATTATGTTTTACATTATATGTGTTGATAAAAAGGta                       <  1:3637233/91‑1 (MQ=255)
                                                                       cacGAACTCGGATTGATAAAATATCAATCCGGGTTTTTATTATGTTCTTTTATATTATGTTTTACATTATATGTGTTGATAAAAAGGtata                     <  1:2862073/91‑1 (MQ=255)
                                                                        acGAACTCGGATTGATAAAATATCAATCCGGGTTTTTATTATGTTCTTTTATATTATGTTTTACATTATATGTGTTGATAAAAAGGTatat                    <  1:2780464/91‑1 (MQ=255)
                                                                         cGAACTCGGATTGATAAAATATCAATCCGGGTTTTTATTATGTTCTTTTATATTATGTTTTACATTATATGTGTTGATAAAAAGGTAtatt                   <  1:2828581/91‑1 (MQ=255)
                                                                           aaCTCGGATTGATAAAATATCAATCCGGGTTTTTATTATGTTCTTTTATATTATGTTTTACATTATATGTGTTGATAAAAAGGTAtattat                 >  1:1762340/1‑91 (MQ=255)
                                                                           aaCTCGGATTGATAAAATATCAATCCGGGTTTTTATTATGTTCTTTTATATTATGTTTTACATTATATGTGTTGATAAAAAGGTAtattat                 <  1:3087032/91‑1 (MQ=255)
                                                                            aCTCGGATTGATAAAATATCAATCCGGGTTTTTATTATGTTCTTTTATATTATGTTTTACATTATATGTGTTGATAAAAAGGTATATtata                <  1:8436/91‑1 (MQ=255)
                                                                            aCTCGGATTGATAAAATATCAATCCGGGTTTTTATTATGTTCTTTTATATTATGTTTTACATTATATGTGTCGATAAAAAGGTATATtata                >  1:255145/1‑91 (MQ=255)
                                                                             cccGGATTGATATTTTATCAATCCGAGTTTTTATTATGTTCTTTTATATTATGTTTTACATTATATGTGTTGATAAAAAGGTATATTATaa               >  1:1647420/3‑91 (MQ=37)
                                                                             cTCGGATTGATAAAATATCAATCCGGGTTTTTATTATGTTCTTTTATATTATGTTTTACATTATATGTGTTGATAAAAAGGTATATTATaa               <  1:2630400/91‑1 (MQ=255)
                                                                             cTCGGATTGATAAAATATCAATCCGGGTTTTTATTATGTTCTTTTATATTATGTTTTACATTATATGTGTTGATAAAAAGGTATATTATaa               <  1:1283089/91‑1 (MQ=255)
                                                                             cTCGGATTGATAAAATATCAATCCGGGTTTTTATTATGTTCTTTTATATTATGTTTTACATTATATGTGTTGATAAAAAGGTATATTATaa               <  1:1306092/91‑1 (MQ=255)
                                                                             cTCGGATTGATAAAATATCAATCCGGGTTTTTATTATGTTCTTTTATATTATGTTTTACATTATATGTGTTGATAAAAAGGTATATTATaa               >  1:318766/1‑91 (MQ=255)
                                                                             cTCGGATTGATAAAATATCAATCCGGGTTTTTATTATGTTCTTTTATATTATGTTTTACATTATATGTGTTGATAAAAAGGTATATTATaa               <  1:3634649/91‑1 (MQ=255)
                                                                             cTCGGATTGATAAAATATCAATCCGGGTTTTTATTATGTTCTTTTATATTATGTTTTACATTATATGTGTTGATAAAAAGGTATATTATaa               >  1:1773087/1‑91 (MQ=255)
                                                                              tCGGATTGATAAAATATCAATCCGGGTTTTTATTATGTTCTTTTATATTATGTTTTACATTATATGTGTTGATAAAAAGGTATATTATaaa              >  1:2491478/1‑91 (MQ=255)
                                                                              ccGGATTGATATTTTATCAATCCGAGTTTTTATTATGTTCTTTTATATTATGTTTTACATTATATGTGTTGATAAAAAGGTATATTATaaa              >  1:3244489/2‑91 (MQ=38)
                                                                              ccGGATTGATATTTTATCAATCCGAGTTTTTATTATGTTCTTTTATATTATGTTTTACATTATATGTGTTGATAAAAAGGTATATTATaaa              >  1:3244475/2‑91 (MQ=37)
                                                                              ccGGATTGATATTTTATCAATCCGAGTTTTTATTATGTTCTTTTATATTATGTTTTACATTATATGTGTTGATAAAAAGGTATATTATaaa              >  1:537063/2‑91 (MQ=37)
                                                                               cGGATTGATAAAATATCAATCCGGGTTTTTATTATGTTCTTTTATATTATGTTTTACATTATATGTGTTGATAAAAAGGTATATTATAAAg             <  1:367339/91‑1 (MQ=255)
                                                                                  aTTGATAAAATATCAATCCGGGTTTTTATTATGTTCTTTTATATTATGTTTTACATTATATGTGTTGATAAAAAGGTATATTATAAAGATc          <  1:3264593/91‑1 (MQ=255)
                                                                                  aTTGATAAAATATCAATCCGGGTTTTTATTATGTTCTTTTATATTATGTTTTACATTATATGTGTTGATAAAAAGGTATATTATAAAGATc          <  1:3265860/91‑1 (MQ=255)
                                                                                       tAAAATATCAATCCGGGTTTTTATTATGTTCTTTTATATTATGTTTTACATTATATGTGTTGATAAAAAGGTATATTATAAAGATCATTAg     <  1:1811458/91‑1 (MQ=255)
                                                                                         aaaTATCAATCCGGGTTTTTATTATGTTCTTTTATATTATGTTTTACATTATATGTGTTGATAAAAAGGTATATTATAAAGATCATTAGCa   >  1:1580616/1‑91 (MQ=255)
                                                                                          aaTATCAATCCGGGTTTTTATTATGTTCTTTTATATTATGTTTTACATTATATGTGTTGATAAAAAGGTATATTATAAAGATCATTAGCAt  >  1:1929333/1‑91 (MQ=255)
                                                                                          |                                                                                          
AAAAAGGTAAATCCTTCGAAGTATAAATATGAAACAGGACCTAAAGCAAACTCTAAAAAATAATATCTAAACACGAACTCGGATTGATAAAATATCAATCCGGGTTTTTATTATGTTCTTTTATATTATGTTTTACATTATATGTGTTGATAAAAAGGTATATTATAAAGATCATTAGCAT  >  USA300TCH1516_ALE/792853‑793033

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: