Predicted mutation
evidence seq id position mutation freq annotation gene description
RA USA300TCH1516_ALE 792,944 A→T 5.8% intergenic (+29/‑248) ltaS → / → ettA Lipoteichoic acid synthase/Energy‑dependent translational throttle protein EttA

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*USA300TCH1516_ALE792,9440AT 5.8% 364.1 / 10.7 104intergenic (+29/‑248)ltaS/ettALipoteichoic acid synthase/Energy‑dependent translational throttle protein EttA
Reads supporting (aligned to +/- strand):  ref base A (32/66);  new base T (4/2);  total (36/68)
Fisher's exact test for biased strand distribution p-value = 1.79e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.67e-01

Only 100 of 118 total aligned reads displayed.

AAAAGGTAAATCCTTCGAAGTATAAATATGAAACAGGACCTAAAGCAAACTCTAAAAAATAATATCTAAACACGAACTCGGATTGATAAAATATCAATCCGGGTTTTTATTATGTTCTTTTATATTATGTTTTACATTATATGTGTTGATAAAAAGGTATATTATAAAGATCATTAGCATA  >  USA300TCH1516_ALE/792854‑793034
                                                                                          |                                                                                          
aaaaGGTAAATCCTTCGAAGTATAAATATGAAACAGGACCTAAAGCAAACTCTAAAAAATAATATCTAAACACGAACTCGGATTGATaaaa                                                                                            >  1:2698534/1‑91 (MQ=255)
aaaaGGTAAATCCTTCGAAGTATAAATATGAAACAGGACCTAAAGCAAACTCTAAAAAATAATATCTAAACACGAACTCGGATTGATaaaa                                                                                            >  1:208411/1‑91 (MQ=255)
aaaaGGTAAATCCTTCGAAGTATAAATATGAAACAGGACCTAAAGCAAACTCGAAAAAATAATATCTAAACACGAACTCGGATTGATaaaa                                                                                            <  1:1162517/91‑1 (MQ=255)
 aaaGGTAAATCCTTCGAAGTATAAATATGAAACAGGACCTAAAGCAAACTCTAAAAAATAATATCTAAACACGAACTCGGATTGATAAAat                                                                                           <  1:1133456/91‑1 (MQ=255)
 aaaGGTAAATCCTTCGAAGTATAAATATGAAACAGGACCTAAAGCAAACTCTAAAAAATAATATCTAAACACGAACTCGGATTGATAAAat                                                                                           >  1:1598144/1‑91 (MQ=255)
 aaaGGTAAATCCTTCGAAGTATAAATATGAAACAGGACCTAAAGCAAACTCTAAAAAATAATATCTAAACACGAACTCGGATTGATAAAat                                                                                           <  1:397918/91‑1 (MQ=255)
  aaGGTAAATCCTTCGAAGTATAAATATGAAACAGGACCTAAAGCAAACTCTAAAAAATAATATCTAAACACGAACTCGGATTGATAAAata                                                                                          <  1:1174676/91‑1 (MQ=255)
  aaGGTAAATCCTTCGAAGTATAAATATGAAACAGGACCTAAAGCAAACTCTAAAAAATAATATCTAAACACGAACTCGGATTGATAAAata                                                                                          <  1:864654/91‑1 (MQ=255)
    ggTAAATCCTTCGAAGTATAAATATGAAACAGGACCTAAAGCAAACTCTAAAAAATAATATCTAAACACGAACTCGGATTGATAAAATATc                                                                                        <  1:2513749/91‑1 (MQ=255)
    ggTAAATCCTTCGAAGTATAAATATGAAACAGGACCTAAAGCAAACTCTAAAAAATAATATCTAAACACGAACTCGGATTGATAAAATATc                                                                                        >  1:3175557/1‑91 (MQ=255)
     gTAAATCCTTCGAAGTATAAATATGAAACAGGACCTAAAGCAAACTCTAAAAAATAATATTTAAACACGAACTCGGATTGATAAAATATCa                                                                                       >  1:3279343/1‑91 (MQ=255)
     gTAAATCCTTCGAAGTATAAATATGAAACAGGACCTAAAGCAAACTCTAAAAAATAATATCTAAACACGAACTCGGATTGATAAAATATCa                                                                                       >  1:3477197/1‑91 (MQ=255)
        aaTCCTTCGAAGTATAAATATGAAACAGGACCTAAAGCAAACTCTAAAAAATAATATCTAAACACGAACTCGGATTGATAAAATATCAATc                                                                                    <  1:1920456/91‑1 (MQ=255)
         aTCCTTCGAAGTATAAATATGAAACAGGACCTAAAGCAAACTCTAAAAAATAATATCTAAACACGAACTCGGATTGATAAAATATCAATcc                                                                                   <  1:1073042/91‑1 (MQ=255)
         aTCCTTCGAAGTATAAATATGAAACAGGACCTAAAGCAAACTCTAAAAAATAATATCTAAACACGAACTCGGATTGATAAAATATCAATcc                                                                                   <  1:422278/91‑1 (MQ=255)
          tCCTTCGAAGTATAAATATGAAACAGGACCTAAAGCAAACTCTAAAAAATAATATCTAAACACGAACTCGGATTGATAAAATATCAATCCg                                                                                  >  1:466300/1‑91 (MQ=255)
          tCCTTCGAAGTATAAATATGAAACAGGACCTAAAGCAAACTCTAAAAAATAATATCTAAACACGAACCCGGATTGATATTTTATCAATCCg                                                                                  <  1:1902475/91‑1 (MQ=38)
           ccTTCGAAGTATAAATATGAAACAGGACCTAAAGCAAACTCTAAAAAATAATATCTAAACACGAACTCGGATTGATAAAATATCAATCCgg                                                                                 <  1:1721443/91‑1 (MQ=255)
           ccTTCGAAGTATAAATATGAAACAGGACCTAAAGCAAACTCTAAAAAATAATATCTAAACACGAACTCGGATTGATAAAATATCAATCCgg                                                                                 <  1:2982787/91‑1 (MQ=255)
           ccTTCGAAGTATAAATATGAAACAGGACCTAAAGCAAACTCTAAAAAATAATATCTAAACACGAACTCGGATTGATAAAATATCAATCCgg                                                                                 <  1:3093606/91‑1 (MQ=255)
                gAAGTATAAATGTGAAACAGGACCTAAAGCAAACTCTAAAAAATAATATCTAAACACGAACTCGGATTGATAAAATATCAATCCGGGtttt                                                                            <  1:3766200/91‑1 (MQ=255)
                  aGTATAAATATGAAACAGGACCTAAAGCAAACTCTAAAAAATAATATCTAAACACGAACTCGGATTGATAAAATATCAATCCGGGTTTtta                                                                          <  1:1498709/91‑1 (MQ=255)
                  aGTATAAATATGAAACAGGACCTAAAGCAAACTCTAAAAAATAATATCCAAACACGAACTCGGATTGATAAAATATCAATCCGGGTTTtta                                                                          >  1:252147/1‑91 (MQ=255)
                   gTATAAATATGAAACAGGACCTAAAGCAAACTCTAAAAAATAATATCTAAACACGAACTCGGATTGATAAAATATCAATCCGGGTTTttat                                                                         <  1:2138239/91‑1 (MQ=255)
                   gTATAAATATGAAACAGGACCTAAAGCAAACTCTAAAAAATAATATCTAAACACGAACTCGGATTGATAAAATATCAATCCGGGTTTttat                                                                         <  1:1957505/91‑1 (MQ=255)
                   gTATAAATATGAAACAGGACCTAAAGCAAACTCTAAAAAATAATATCTAAACACGAACTCGGATTGATAAAATATCAATCCGGGTTTttat                                                                         <  1:321946/91‑1 (MQ=255)
                    tataAATATGAAACAGGACCTAAAGCAAACTCTAAAAAATAATATCTAAACACGAACTCGGATTGATAAAATATCAATCCGGGTTTttatt                                                                        >  1:301154/1‑91 (MQ=255)
                    tataAATATGAAACAGGACCTAAAGCAAACTCTAAAAAATAATATCTAAACACGAACTCGGATTGATAAAATATCAATCCGGGTTTttatt                                                                        <  1:3151251/91‑1 (MQ=255)
                    tataAATATGAAACAGGACCTAAAGCAAACTCTAAAAAATAATATCTAAACACGAACTCGGATTGATAAAATATCAATCCGGGTTTttatt                                                                        >  1:3696717/1‑91 (MQ=255)
                     ataAATATGAAACAGGACCTAAAGCAAACTCTAAAAAATAATATCTAAACACGAACTCGGATTGATAAAATATCAATCCGGGTTTttatta                                                                       <  1:3013994/91‑1 (MQ=255)
                     ataAATATGAAACAGGACCTAAAGCAAACTCTAAAAAATAATATCTAAACACGAACGCGGATTGATAAAATATCAATCCGGGTTTttatta                                                                       <  1:539679/91‑1 (MQ=255)
                       aaaTATGAAACAGGACCTAAAGCAAACTCTAAAAAATAATATCTAAACACGAACTCGGATTGATAAAATATCAATCCGGGTTTTTATTATg                                                                     <  1:505571/91‑1 (MQ=255)
                       aaaTATGAAACAGGACCTAAAGCAAACTCTAAAAAATAATATCTAAACACGAACTCGGATTGATAAAATATCAATCCGGGTTTTTATTATg                                                                     <  1:2559094/91‑1 (MQ=255)
                       aaaTATGAAACAGGACCTAAAGCAAACTCTAAAAAATAATATCTAAACACGAACTCGGATTGATAAAATATCAATCCGGGTTTTTATTATg                                                                     <  1:2864862/91‑1 (MQ=255)
                       aaaTATGAAACAGGACCTAAAGCAAACTCTAAAAAATAATATCTAAACACGAACTCGGATTGATAAAATATCAATCCGGGTTTTTATTATg                                                                     <  1:2298371/91‑1 (MQ=255)
                        aaTATGAAACAGGACCTAAAGCAAACTCTAAAAAATAATATCTAAACACGAACTCGGATTGATAAAATATCAATCCGGGTTTTTATTATGt                                                                    >  1:2476421/1‑91 (MQ=255)
                        aaTATGAAACAGGACCTAAAGCAAACTCTAAAAAATAATATCTAAACACGAACTCGGATTGATAAAATATCAATCCGGGTTTTTATTATGt                                                                    <  1:3880858/91‑1 (MQ=255)
                        aaTATGAAACAGGACCTAAAGCAAACTCTAAAAAATAATATCTAAACACGAACTCGGATTGATAAAATATCAATCCGGGTTTTTATTATGt                                                                    >  1:3331426/1‑91 (MQ=255)
                        aaTATGAAACAGGACCTAAAGCAAACTCTAAAAAATAATATCTAAACACGAACTCGGATTGATAAAATATCAATCCGGGTTTTTATTATGt                                                                    >  1:3331052/1‑91 (MQ=255)
                          tatGAAACAGGACCTAAAGCAAACTCTAAAAAATAATATCTAAACACGAACTCGGATTGATAAAATATCAATCCGGGTTTTTATTATGTTc                                                                  >  1:561483/1‑91 (MQ=255)
                          tatGAAACAGGACCTAAAGCAAACTCTAAAAAATAATATCTAAACACGAACTCGGATTGATAAAATATCAATCCGGGTTTTTATTATGTTc                                                                  >  1:2682321/1‑91 (MQ=255)
                               aaCAGGACCTAAAGCAAACTCTAAAAAATAATATCTAAACACGAACTCGGATTGATAAAATATCAATCCGGGTTTTTATTATGTTCTTTta                                                             >  1:2552881/1‑91 (MQ=255)
                                  aGGACCTAAAGCAAACTCTAAAAAATAATATCTAAACACGAACTCGGATTGATAAAATATCAATCCGGGTTTTTATTATGTTCTTTTatat                                                          >  1:855809/1‑91 (MQ=255)
                                  aGGACCTAAAGCAAACTCTAAAAAATAATATCTAAACACGAACTCGGATTGATAAAATATCAATCCGGGTTTTTATTATGTTCTTTTatat                                                          >  1:855260/1‑91 (MQ=255)
                                    aaCCTAAAGCAAACTCTAAATAATAATATCTAAACACGAACTCGGATTGATAAAATATCAATCCGGGTTTTTATTATGTTCTTTTAtatta                                                        <  1:459727/90‑1 (MQ=255)
                                      ccTAAAGCAAACTCTAAAAAATAATATCTAAACACGAACTCGGATTGATAAAATATCAATCCGGGTTTTTATTATGTTCTTTTATATTATg                                                      <  1:1407346/91‑1 (MQ=255)
                                       cTAAAGCAAACTCTAAAAAATAATATCTAAACACGAACTCGGATTGATAAAATATCAATCCGGGTTTTTATTATGTTCTTTTATATTATGt                                                     <  1:2845845/91‑1 (MQ=255)
                                         aaaGCAAACTCTAAAAAATAATATCTAAACACGAACTCGGATTGATAAAATATCAATCCGGGTTTTTATTATGTTCTTTTATATTATGttt                                                   >  1:3242532/1‑91 (MQ=255)
                                          aaGCAAACTCTAAAAAATAATATCTAAACACGAACTCGGATTGATAAAATATCAATCCGGGTTTTTATTATGTTCTTTTATATTATGtttt                                                  >  1:916421/1‑91 (MQ=255)
                                          aaGCAAACTCTAAAAAATAATATCTAAACACGAACTCGGATTGATAAAATATCAATCCGGGTTTTTATTATGTTCTTTTATATTATGtttt                                                  <  1:3670451/91‑1 (MQ=255)
                                            gCAAACTCTAAAAAATAATATCTAAACACGAACTCGGATTGATAAAATATCAATCCGGGTTTTTATTATGTTCTTTTATATTATGTTTTAc                                                <  1:538779/91‑1 (MQ=255)
                                               aaCTCTAAAAAATAATATCTAAACACGAACTCGGATTGATAAAATATCAATCCGGGTTTTTATTATGTTCTTTTATATTATGTTTTACAtt                                             >  1:1770610/1‑91 (MQ=255)
                                               aaCTCTAAAAAATAATATCTAAACACGAACTCGGATTGATAAAATATCAATCCGGGTTTTTATTATGTTCTTTTATATTATGTTTTACAtt                                             >  1:59060/1‑91 (MQ=255)
                                               aaCTCTAAAAAATAATATCTAAACACGAACTCGGATTGATAAAATATCAATCCGGGTTTTTATTATGTTCTTTTATATTATGTTTTACAtt                                             >  1:60363/1‑91 (MQ=255)
                                               aaCTCTAAAAAATAATATCTAAACACGAACTCGGATTGATAAAATATCAATCCGGGTTTTTATTATGTTCTTTTATATTATGTTTTACAtt                                             >  1:59607/1‑91 (MQ=255)
                                                  tctAAAAAATAATATCTAAACACGAACTCGGATTGATAAAATATCAATCCGGGTTTTTATTATGTTCTTTTATATTATGTTTTACATtata                                          <  1:2347727/91‑1 (MQ=255)
                                                    tAAAAAATAATATCTAAACACGAACTCGGATTGATAAAATATCAATCCGGGTTTTTATTATGTTCTTTTATATTATGTTTTACATTATAtg                                        >  1:2994988/1‑91 (MQ=255)
                                                     aaaaaaTAATATCTAAACACGAACTCGGACTGATAAAATATCAATCCGGGTTTTTATTATGTTCTTTTATATTATGTTTTACATTATAtgt                                       >  1:1766629/1‑91 (MQ=255)
                                                      aaaaaTAATATCTAAACACGAACTCGGATTGATAAAATATCAATCCGGGTTTTTATTATGTTCTTTTATATTATGTTTTACATTATAtgtg                                      <  1:1496517/91‑1 (MQ=255)
                                                      aaaaaTAATATCTAAACACGAACTCGGATTGATAAAATATCAATCCGGGTTTTTATTATGTTCTTTTATATTATGTTTTACATTATAtgtg                                      <  1:260504/91‑1 (MQ=255)
                                                      aaaaaTAATATCTAAACACGAACTCGGATTGATAAAATATCAATCCGGGTTTTTATTATGTTCTTTTATATTATGTTTTACATTATAtgtg                                      >  1:236593/1‑91 (MQ=255)
                                                      aaaaaTAATATCTAAACACGAACTCGGATTGATAAAATATCAATCCGGGTTTTTATTATGTTCTTTTATATTATGTTTTACATTATAtgtg                                      >  1:625333/1‑91 (MQ=255)
                                                       aaaaTAATATCTAAACACGAACTCGGATTGATAAAATATCAATCCGGGTTTTTATTATGTTCTTTTATATTATGTTTTACATTATATgtgt                                     <  1:2847340/91‑1 (MQ=255)
                                                       aaaaTAATATCTAAACACGAACTCGGATTGATAAAATATCAATCCGGGTTTTTATTATGTTCTTTTATATTATGTTTTACATTATATgtgt                                     <  1:1280195/91‑1 (MQ=255)
                                                          ataataTCTAAACACGAACTCGGATTGATAAAATATCAATCCGGGTTTTTATTATGTTCTTTTATATTATGTTTTACATTATATGTGTTGa                                  <  1:1620195/91‑1 (MQ=255)
                                                          ataataTCTAAACACGAACTCGGATTGATAAAATATCAATCCGGGTTTTTATTATGTTCTTTTATATTATGTTTTACATTATATGTGTTGa                                  <  1:1620127/91‑1 (MQ=255)
                                                             atatCTAAACACGAACTCGGATTGATAAAATATCAATCCGGGTTTTTATTATGTTCTTTTATATTATGTTTTACATTATATGTGTTGATaa                               <  1:1839599/91‑1 (MQ=255)
                                                              tatCTAAACACGAACTCGGATTGATAAAATATCAATCCGGGTTTTTATTATGTTCTTTTATATTATGTTTTACATTATATGTGTTGATaaa                              <  1:1479037/91‑1 (MQ=255)
                                                               atCTAAACACGAACTCGGATTGATAAAATATCAATCCGGGTTTTTATTATGTTCTTTTATATTATGTTTTACATTATATGTGTTGATaaaa                             <  1:1707033/91‑1 (MQ=255)
                                                                tCTAAACACGAACTCGGATTGATAAAATATCAATCCGGGTTTTTATTATGTTCTTTTATATTATGTTTTACATTATATTTGTTGATaaaaa                            <  1:3173036/91‑1 (MQ=255)
                                                                tCTAAACACGAACTCGGATTGATAAAATATCAATCCGGGTTTTTATTATGTTCTTTTATATTATGTTTTACATTATATGTGTTGATaaaaa                            <  1:2448777/91‑1 (MQ=255)
                                                                   aaaCACGAACTCGGATTGATAAAATATCAATCCGGGTTTTTATTATGTTCTTTTATATTATGTTTTACATTATATGTGTTGATAAAAAGGt                         <  1:545859/91‑1 (MQ=255)
                                                                    aaCACGAACTCGGATTGCTAAAATATCAATCCGGGTTTTTATTATGTTCTTTTATATTATGTTTTACATTATATGTGTTGATAAAAAGGta                        <  1:3553285/91‑1 (MQ=255)
                                                                    aaCACGAACTCGGATTGATAAAATATCAATCCGGGTTTTTATTATGTTCTTTTATATTATGTTTTACATTATATGTGTTGATAAAAAGGta                        <  1:2893314/91‑1 (MQ=255)
                                                                    aaCACGAACTCGGATTGATAAAATATCAATCCGGGTTTTTATTATGTTCTTTTATATTATGTTTTACATTATATGTGTTGATAAAAAGGta                        <  1:4130878/91‑1 (MQ=255)
                                                                    aaCACGAACTCGGATTGATAAAATATCAATCCGGGTTTTTATTATGTTCTTTTATATTATGTTTTACATTATATGTGTTGATAAAAAGGta                        <  1:2217930/91‑1 (MQ=255)
                                                                       acGAACTCGGATTGATAAAATATCAATCCGGGTTTTTATTATGTTCTTTTATATTATGTTTTACATTATATGTGTTGATAAAAAGGTatat                     <  1:2780464/91‑1 (MQ=255)
                                                                        cGAACTCGGATTGATAAAATATCAATCCGGGTTTTTATTATGTTCTTTTATATTATGTTTTACATTATATGTGTTGATAAAAAGGTAtatt                    <  1:2828581/91‑1 (MQ=255)
                                                                          aaCTCGGATTGATAAAATATCAATCCGGGTTTTTATTATGTTCTTTTATATTATGTTTTACATTATATGTGTTGATAAAAAGGTAtattat                  <  1:3087032/91‑1 (MQ=255)
                                                                          aaCTCGGATTGATAAAATATCAATCCGGGTTTTTATTATGTTCTTTTATATTATGTTTTACATTATATGTGTTGATAAAAAGGTAtattat                  >  1:1762340/1‑91 (MQ=255)
                                                                           aCTCGGATTGATAAAATATCAATCCGGGTTTTTATTATGTTCTTTTATATTATGTTTTACATTATATGTGTTGATAAAAAGGTATATtata                 <  1:8436/91‑1 (MQ=255)
                                                                            cTCGGATTGATAAAATATCAATCCGGGTTTTTATTATGTTCTTTTATATTATGTTTTACATTATATGTGTTGATAAAAAGGTATATTATaa                >  1:1773087/1‑91 (MQ=255)
                                                                            cTCGGATTGATAAAATATCAATCCGGGTTTTTATTATGTTCTTTTATATTATGTTTTACATTATATGTGTTGATAAAAAGGTATATTATaa                <  1:3634649/91‑1 (MQ=255)
                                                                            cTCGGATTGATAAAATATCAATCCGGGTTTTTATTATGTTCTTTTATATTATGTTTTACATTATATGTGTTGATAAAAAGGTATATTATaa                <  1:2630400/91‑1 (MQ=255)
                                                                            cTCGGATTGATAAAATATCAATCCGGGTTTTTATTATGTTCTTTTATATTATGTTTTACATTATATGTGTTGATAAAAAGGTATATTATaa                <  1:1306092/91‑1 (MQ=255)
                                                                            cTCGGATTGATAAAATATCAATCCGGGTTTTTATTATGTTCTTTTATATTATGTTTTACATTATATGTGTTGATAAAAAGGTATATTATaa                <  1:1283089/91‑1 (MQ=255)
                                                                            cTCGGATTGATAAAATATCAATCCGGGTTTTTATTATGTTCTTTTATATTATGTTTTACATTATATGTGTTGATAAAAAGGTATATTATaa                >  1:318766/1‑91 (MQ=255)
                                                                             tCGGATTGATAAAATATCAATCCGGGTTTTTATTATGTTCTTTTATATTATGTTTTACATTATATGTGTTGATAAAAAGGTATATTATaaa               >  1:2491478/1‑91 (MQ=255)
                                                                             ccGGATTGATATTTTATCAATCCGAGTTTTTATTATGTTCTTTTATATTATGTTTTACATTATATGTGTTGATAAAAAGGTATATTATaaa               >  1:537063/2‑91 (MQ=37)
                                                                             ccGGATTGATATTTTATCAATCCGAGTTTTTATTATGTTCTTTTATATTATGTTTTACATTATATGTGTTGATAAAAAGGTATATTATaaa               >  1:3244489/2‑91 (MQ=38)
                                                                             ccGGATTGATATTTTATCAATCCGAGTTTTTATTATGTTCTTTTATATTATGTTTTACATTATATGTGTTGATAAAAAGGTATATTATaaa               >  1:3244475/2‑91 (MQ=37)
                                                                              cGGATTGATAAAATATCAATCCGGGTTTTTATTATGTTCTTTTATATTATGTTTTACATTATATGTGTTGATAAAAAGGTATATTATAAAg              <  1:367339/91‑1 (MQ=255)
                                                                              cGGATTGATAAAATATCAATCCGGGTTTTTATTATGTTCTTTTATATTATGTTTTACATTATATGTGTTGATAAAAAGGTATATTATAAAg              <  1:1454594/91‑1 (MQ=255)
                                                                              cGGATTGATAAAATATCAATCCGGGTTTTTATTATGTTCTTTTATATTATGTTTTACATTATATGTGTTGATAAAAAGGTATATTATAAAg              <  1:365380/91‑1 (MQ=255)
                                                                                 aTTGATAAAATATCAATCCGGGTTTTTATTATGTTCTTTTATATTATGTTTTACATTATATGTGTTGATAAAAAGGTATATTATAAAGATc           <  1:3264593/91‑1 (MQ=255)
                                                                                    gATAAAATATCAATCCGGGTTTTTATTATGTTCTTTTATATTATGTTTTACATTATATGTGTTGATAAAAAGGTATATTATAAAGATCAtt        >  1:1597123/1‑91 (MQ=255)
                                                                                        aaaTATCAATCCGGGTTTTTATTATGTTCTTTTATATTATGTTTTACATTATATGTGTTGATAAAAAGGTATATTATAAAGATCATTAGCa    >  1:1580616/1‑91 (MQ=255)
                                                                                         aaTATCAATCCGGGTTTTTATTATGTTCTTTTATATTATGTTTTACATTATATGTGTTGATAAAAAGGTATATTATAAAGATCATTAGCAt   >  1:1929333/1‑91 (MQ=255)
                                                                                          atatCAATCCGGGTTTTTATTATGTTCTTTTATATTATGTTTTACATTATATGTGTTGATAAAAAGGTATATTATAAAGATCATTAGCATa  >  1:2782252/1‑91 (MQ=255)
                                                                                          atatCAATCCGGGTTTTTATTATGTTCTTTTATATTATGTTTTACATTATATGTGTTGATAAAAAGGTATATTATAAAGATCATTAGCATa  >  1:696182/1‑91 (MQ=255)
                                                                                          |                                                                                          
AAAAGGTAAATCCTTCGAAGTATAAATATGAAACAGGACCTAAAGCAAACTCTAAAAAATAATATCTAAACACGAACTCGGATTGATAAAATATCAATCCGGGTTTTTATTATGTTCTTTTATATTATGTTTTACATTATATGTGTTGATAAAAAGGTATATTATAAAGATCATTAGCATA  >  USA300TCH1516_ALE/792854‑793034

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: