| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | USA300TCH1516_ALE | 895,942 | C→T | 6.9% | intergenic (+141/+2) | metQ_2 → / ← Int‑Tn_1 | Methionine‑binding lipoprotein MetQ/Transposase from transposon Tn916 |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | USA300TCH1516_ALE | 895,942 | 0 | C | T | 6.9% | 429.5 / 14.4 | 131 | intergenic (+141/+2) | metQ_2/Int‑Tn_1 | Methionine‑binding lipoprotein MetQ/Transposase from transposon Tn916 |
| Reads supporting (aligned to +/- strand): ref base C (44/77); new base T (6/3); total (51/80) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 8.62e-02 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.99e-01 | |||||||||||
Only 100 of 131 total aligned reads displayed.
TGTGGTATTGAAAATAAAAAAGGGCACAAAAGGGGCAGTATATGCAAATTATCGAATTTTAAACAAAAAAATACGCTCAGATTTGAGCGCATTATCCAAGTTTTACCTGTTCAAGTTTGTTCATCATATCCTTATCCATCTGTTCAGTAACGTGAGAATAAATGGAAAGTGTTGTA > USA300TCH1516_ALE/895853‑896028 | gtgGTATTGAAAATAAAAAAGGGCACAAAAGGGGCAGTATATGCAAATTATCGAATTTTAAACAAAAAAATACGCTCAGATTTGAGCGCAt < 1:3089410/91‑1 (MQ=255) tgGTATTGAAAATAAAAAAGGGCACAAANGGGGNAGTATATGCAANTTATCGANTTTTAANCAAAAAAATGCGCTCAAATCTGAGCGTAtt < 1:1174561/91‑1 (MQ=37) tgGTATTGAAAATAAAAAAGGGCACAAAAGGGGCAGTATATGCAAATTATCGAATTTTAAACAAAAAAATACGCTCAAATCTGAGCGTAtt < 1:2704912/91‑1 (MQ=255) ggTATTGAAAATAAAAAAGGGCACAAAAGGGGCAGTATATGCAAATTATCGAATTTTAAACAAAAAAATACGCTCAGATTTGAGCGCATTa < 1:1576542/91‑1 (MQ=255) gTATTGAAAATAAAAAAGGGCACAAAAGGGGCAGTATATGCAAATTATCGAATTTTAAACAAAAAAATGCGCTCAAATCTGAGCGTAtttt < 1:120019/91‑3 (MQ=38) tATTGAAAATAAAAAAGGGCACAAAAGGGGCAGTATATGCAAATTATCGAATTTTAAACAAAAAAATACGCTCAGATTTGAGCGCATTATc < 1:2714647/91‑1 (MQ=255) aTTGAAAATAAAAAAGGGCACAAAAGGGGCAGTATATGCAAATTATCGAATTTTAAACAAAAAAATACGCTCAGATTTGAGCGCATTATcc < 1:2040849/91‑1 (MQ=255) aTTGAAAATAAAAAAGGGCACAAAAGGGGCAGTATATGCAAATTATCGAATTTTAAACAAAAAAATACGCTCAGATTTGAGCGCATTATcc < 1:2041212/91‑1 (MQ=255) ttGAAAATAAAAAAGGGCACAAAAGGGGCAGTATATGCAAATTAGCGAATTTTGAACGAAAAAATACGCTCAGATTTGAGCGCATTATCCa < 1:3306739/91‑1 (MQ=255) aaTAAAAAAGGGCACAAAAGGGGCAGTATATGCAAATTATCGAATTTTAAACAAAAAAATACGCTCAGATTTGAGCGCATTATCCAAGttt > 1:6115/1‑91 (MQ=255) aTAAAAAAGGGCACAAAAGGGGCAGTATATGCAAATTATCGAATTTTAAACAAAAAAATACGCTCAGATTTGAGCGCATTATCCAAGtttt > 1:2507860/1‑91 (MQ=255) aaaaaGGGCACAAAAGGGGCAGTATATGCAAATTATCGAATTTTAAACAAAAAAATACGCTCAGATTTGAGCGCATTATCCAAGTTTTAcc < 1:201997/91‑1 (MQ=255) aaaGGGCACAAAAGGGGCAGTATATGCAAATTATCGAATTTTAAACAAAAAAATACGCTCAGATTTGAGCGCATTATCCAAGTTTTACCTg < 1:3676537/91‑1 (MQ=255) aaaGGGCACAAAAGGGGCAGTATATGCAAATTATCGAATTTTAAACAAAAAAATACGCTCAGATTTGAGCGCATTATCCAAGTTTTACCTg < 1:3241460/91‑1 (MQ=255) aaaGGGCACAAAAGGGGCAGTATATGCAAATTATCGAATTTTAAACAAAAAAATACGCTCAGATTTGAGCGCATTATCCAAGTTTTACCTg < 1:3935695/91‑1 (MQ=255) aaaGGGCACAAAAGGGGCAGTATATGCAAATTATCGAATTTTAAACAAAAAAATACGCTCAGATTTGAGCGCATTATCCAAGTGTTACCTg > 1:2076002/1‑91 (MQ=255) aaaGGGCACAAAAGGGGCAGTATATGCAAATTATCGAATTTTAAACAAAAAAATACGCTCAGATTTGAGCGCATTATCCAAGTCTTACCTg > 1:2076780/1‑91 (MQ=255) aaGGGCACAAAAGGGGCAGTATATGCAAATTATCGAATTTTAAACAAAAAAATACGCTCAGATTTGAGCGCATTATCCAAGTTTTACCTGt > 1:2540568/1‑91 (MQ=255) aaGGGCACAAAAGGGGCAGTATATGCAAATTATCGAATTTTAAACAAAAAAATACGCTCAGATTTGAGCGCATTATCCAAGTTTTACCTGt > 1:864920/1‑91 (MQ=255) gggCACAAAAGGGGCAGTATATGCAAATTATCGAATTTTAAACAAAAAAATACGCTCAGATTTGAGCGCATTATCCAAGTTTTACCTGTTc < 1:621645/91‑1 (MQ=255) gggCACAAAAGGGGCAGTATATGCAAATTATCGAATTTTAAACAAAAAAATACGCTCAGATTTGAGCGCATTATCCAAGTTTTACCTGTTc < 1:1102230/91‑1 (MQ=255) gCACAAAAGGGGCAGTATATGCAAATTATCGAATTTTAAACAAAAAAATACGCTCAGATTTGAGCGCATTATCCAAGTTTTACCTGTTCaa < 1:3803639/91‑1 (MQ=255) cacaAAAGGGGCAGTATATGCAAATTATCGAATTTTAAACAAAAAAATACGCTCAGATTTGAGCGCATTATCCAAGTTTTACCTGTTCAAg > 1:1846263/1‑91 (MQ=255) cacaAAAGGGGCAGTATATGCAAATTATCGAATTTTAAACAAAAAAATACGCTCAGATTTGAGCGCATTATCCAAGTTTTACCTGTTCAAg > 1:1843798/1‑91 (MQ=255) cacaAAAGGGGCAGTATATGCAAATTATCGAATTTTAAACAAAAAAATACGCTCAGATTTGAGCGCATTATCCAAGTTTTACCTGTTCAAg > 1:735590/1‑91 (MQ=255) cacaAAAGGGGCAGTATATGCAAATTATCGAATTTTAAACAAAAAAATACGCTCAGATTTGAGCGCATTATCCAAGTTTTACCTGTTCAAg > 1:735523/1‑91 (MQ=255) caAAAGGGGCAGTATATGCAAATTATCGAATTTTAAACAAAAAAATACGCTCAGATTTGAGCGCATTATCCAAGTTTTACCTGTTCAAGtt > 1:368565/1‑91 (MQ=255) aaGGGGCAGTATATGCAAATTATCGAATTTTAAACAAAAAAATACGCTCAGATTTGAGCGCATTATCCAAGTTTTACCTGTTCAAGTTTGt > 1:1905326/1‑91 (MQ=255) aaGGGGCAGTATATGCAAATTATCGAATTTTAAACAAAAAAATACGCTCAGATTTGAGCGCATTATCCAAGTTTTACCTGTTCAAGTTTGt < 1:2923328/91‑1 (MQ=255) aGGGGCAGTATATGCAAATTATCGAATTTTAAACAAAAAAATACGCTGAGATTTGAGCGCATTATCCAAGTTTTACCTGTTCAAGTTTGtt < 1:496907/91‑1 (MQ=255) ggggCAGTATATGCAGATTATCTAATTTTAAACAAAAAAATACGCTCAGATTTGAGCGCATTATCCAAGTTTTACCTGTTCAAGTTTGTtc < 1:2434880/91‑1 (MQ=255) ggggCAGTATATGCAAATTATCGAATTTTAAACAAAAAAATACGCTCAGATTTGAGCGCATTATCCAAGTTTTACCTGTTCAAGTTTGTtc < 1:2433944/91‑1 (MQ=255) ggggCAGTATATGCAAATTATCGAATTTTAAACAAAAAAATACGCTCAGATTTGAGCGCATTATCCAAGTTTTACCTGTTCAAGTTTGTtc < 1:2242311/91‑1 (MQ=255) ggggCAGTATAGGCAAATTATCGAATTTTAAACAAAAAAATACGCTCAGATTTGAGCGCATTATCCAAGTTTTACCTGTTCAAGTTTGTtc < 1:3765351/91‑1 (MQ=255) ggggCAGTATAGGCAAATTATCGAATTTTAAACAAAAAAATACGCTCAGATTTGAGCGCATTATCCAAGTTTTACCTGTTCAAGTTTGTtc < 1:3764762/91‑1 (MQ=255) ggCAGTATATGCAAATTATCGAATTTTAAACAAAAAAATACGCTCAGATTTGAGCGCATTATCCAAGTTTTACCTGTTCAAGTTTGTtcat < 1:410825/91‑1 (MQ=255) ggCAGTATATGCAAATTATCGAATTTTAAACAAAAAAATACGCTCAGATTTGAGCGCATTATCCAAGTTTTACCTGTTCAAGTTTGTtcat > 1:13014/1‑91 (MQ=255) cAGTATATGCAAATTATCGAATTTTAAACAAAAAAATACGCTCAGATTTGAGCGCATTATCCAAGTTTTACCTGTTCAAGTTTGTtcatca < 1:4118130/91‑1 (MQ=255) cAGTATATGCAAATTATCGAATTTTAAACAAAAAAATACGCTCAGATTTGAGCGCATTATCCAAGTTTTACCTGTTCAAGTTTGTtcatca < 1:4117805/91‑1 (MQ=255) cAGTATATGCAAATTATCGAATTTTAAACAAAAAAATACGCTCAGATTTGAGCGCATTATCCAAGTTTTACCTGTTCAAGTTTGTtcatca < 1:2027788/91‑1 (MQ=255) aGTATATGCAAATTATCGAATTTTAAACAAAAAAATACGCTCAGATTTGAGCGCATTATCCAAGTTTTACCTGTTCAAGTTTGTTcatcat < 1:3630626/91‑1 (MQ=255) gTATATGCAAATTATCGAATTTTAAACAAAAAAATACGCTCAGATTTGAGCGCATTATCCAAGTTTTACCTGTTCAAGTTTGTTCATCata < 1:3616843/91‑1 (MQ=255) atatGCAAATTATCGAATTTTAAACAAAAAAATACGCTCAGATTTGAGCGCATTATCCAAGTTTTACCTGTTCAAGTTTGTTCATCATATc < 1:1725645/91‑1 (MQ=255) atGCAAATTATCGAATTTTAAACAAAAAAATACGCTCAGATTTGAGCGCATTATCCAAGTTTTACCTGTTCAAGTTTGTTCATCATATCCt < 1:2244378/91‑1 (MQ=255) atGCAAATTATCGAATTTTAAACAAAAAAATACGCTCAGATTTGAGCGCATTATCCAAGTTTTACCTGTTCAAGTTTGTTCATCATATCCt > 1:1572104/1‑91 (MQ=255) atGCAAATTATCGAATTTTAAACAAAAAAATACGCTCAGATTTGAGCGCATTATCCAAGTTTTACCTGTTCAAGTTTGTTCATCATATCCt < 1:1311240/91‑1 (MQ=255) gCAAATTATCGAATTTTAAACAAAAAAATACGCTCAGATTTGAGCGCATTATCCAAGTTTTACCTGTTCAAGTTTGTTCATCATATCCTTa > 1:2779/1‑91 (MQ=255) cAAATTATCGAATTTTAAACAAAAAAATACGCTCAGATTTGAGCGCATTATCCAAGTTTTACCTGTTCAAGTTTGTTCGTCATATCCTTAt < 1:3190126/91‑1 (MQ=255) cAAATTATCGAATTTTAAACAAAAAAATACGCTCAGATTTGAGCGCATTATCCAAGTTTTACCTGTTCAAGTTTGTTCATCATATCCTTAt < 1:3688346/91‑1 (MQ=255) cAAATTATCGAATTTTAAACAAAAAAATACGCTCAGATTTGAGCGCATTATCCAAGTTTTACCTGTTCAAGTTTGTTCATCATATCCTTAt < 1:2434971/91‑1 (MQ=255) cAAATTATCGAATTTTAAACAAAAAAATACGCTCAGATTTGAGCGCATTATCCAAGTTTTACCTGTTCAAGTTTGTTCATCATATCCTTAt < 1:1609433/91‑1 (MQ=255) aaaTTATCGAATTTTAAACAAAAAAATACGCTCAGATTTGAGCGCATTATCCAAGTTTTACCTGTTCAAGTTTGTTCATCATATCCTTATc < 1:2284188/91‑1 (MQ=255) aaaTTATCGAATTTTAAACAAAAAAATACGCTCAGATTTGAGCGCATTATCCAAGTTTTACCTGTTCAAGTTTGTTCATCATATCCTTATc < 1:611623/91‑1 (MQ=255) aaTTATCGAATTTTAAACAAAAAAATACGCTCAGATTTGAGCGCATTATCCAAGTTTTACCTGTTCAAGTTTGTTCATCATATCCTTATcc > 1:3946425/1‑91 (MQ=255) aaTTATCGAATTTTAAACAAAAAAATACGCTCAGATTTGAGCGCATTATCCAAGTTTTACCTGTTCAAGTTTGTTCATCATATCCTTATcc < 1:74686/91‑1 (MQ=255) aTTATCGAATTTTAAACAAAAAAATACGCTCAGATTTGAGCGCATTATCCAAGTTTTACCTGTTCAAGTTTGTTCATCATATCCTTATCCa > 1:423419/1‑91 (MQ=255) aTTATCGAATTTTAAACAAAAAAATACGCTCAGATTTGAGCGCATTATCCAAGTTTTACCTGTTCAAGTTTGTTCATCATATCCTTATCCa > 1:729343/1‑91 (MQ=255) ttATCGAATTTTAAACAAAAAAATACGCTCAGATTTGAGCGCATTATCCAAGTTTTACCTGTTCAAGTTTGTTCATCATATCCTTATCCAt < 1:3843203/91‑1 (MQ=255) ttATCGAATTTTAAACAAAAAAATACGCTCAGATTTGAGCGCATTATCCAAGTTTTACCTGTTCAAGTTTGTTCATCATATCCTTATCCAt < 1:3843181/91‑1 (MQ=255) aTCGAATTTTAAACAAAAAAATACGCTCAGATTTGAGCGCATTATCCAAGTTTTACCTGTTCAAGTTTGTTCATCATATCCTTATCCATCt > 1:457234/1‑91 (MQ=255) tCGAATTTTAAACAAAAAAATACGCTCAGATTTGAGCGCATTATCCAAGTTTTACCTGTTCAAGTTTGTTCATCATATCCTTATCCATCTg < 1:3734584/91‑1 (MQ=255) tCGAATTTTAAACAAAAAAATACGCTCAGATTTGAGCGCATTATCCAAGTTTTACCTGTTCAAGTTTGTTCATCATATCCTTATCCATCTg < 1:2880664/91‑1 (MQ=255) tCGAATTTTAAACAAAAAAATACGCTCAGATTTGAGCGCATTATCCAAGTTTTACCTGTTCAAGTTTGTTCATCATATCCTTATCCATCTg < 1:1010957/91‑1 (MQ=255) tCGAATTTTAAACAAAAAAATACGCTCAGATTTGAGCGCATTATCCAAGTTTTACCTGTTCAAGTTTGTTCATCATATCCTTATCCATCTg < 1:1011062/91‑1 (MQ=255) cGAATTTTAAACAAAAAAATACGCTCAGATTTGAGCGCATTATCCAAGTTTTACCTGTTCAAGTTTGTTCATCATATCCTTATCCATCTGt > 1:3015335/1‑91 (MQ=255) cGAATTTTAAACAAAAAAATACGCTCAGATTTGAGCGCATTATCCAAGTTTTACCTGTTCAAGTTTGTTCATCATATCCTTATCCATCTGt > 1:1467440/1‑91 (MQ=255) cGAATTTTAAACAAAAAAATACGCTCAGATTTGAGCGCATTATCCAAGTTTTACCTGTTCAAGTTTGTTCATCATATCCTTATCCATCTGt > 1:1406838/1‑91 (MQ=255) tttAAACAAAAAAATACGCTCAGATTTGAGCGCATTATCCAAGTTTTACCTGTTCAAGTTTGTTCATCATATCCTTATCCATCTGTTCAGt < 1:87741/91‑1 (MQ=255) tttAAACAAAAAAATACGCTCAGATTTGAGCGCATTATCCAAGTTTTACCTGTTCAAGTTTGTTCATCATATCCTTATCCATCTGTTCAGt < 1:1469128/91‑1 (MQ=255) aaaCAAAAAAATACGCTCAGATTTGAGCGCATTATCCAAGTTTTACCTGTTCAAGTTTGTTCATCATATCCTTATCCATCTGTTCAGTAAc > 1:4017514/1‑91 (MQ=255) aCAAAAAAATACGCTCAGATTTGAGCGCATTATCCAAGTTTTACCTGTTCAAGTTTGTTCATCATATCCTTATCCATCTGTTCAGTAACGt < 1:1375699/91‑1 (MQ=255) aCAAAAAAATACGCTCAGATTTGAGCGCATTATCCAAGTTTTACCTGTTCAAGTTTGTTCATCATATCCTTATCCATCTGTTCAGTAACGt < 1:2783266/91‑1 (MQ=255) cAAAAAAATACGCTCAGATTTGAGCGCATTATCCAAGTTTTACCTGTTCAAGTTTGTTCATCATATCCTTATCCATCTGTTCAGTAACGTg < 1:3919242/91‑1 (MQ=255) aaaaaTACGCTCAGATTTGAGCGCATTATCCAAGTTTTACCTGTTCAAGTTTGTTCATCATATCCTTATCCATCTGTTCAGTAACGTgaga > 1:1689565/1‑91 (MQ=255) aaaaTACGCTCAGATTTGAGCGCATTATCCAAGTTTTACCTGTTCAAGTTTGTTCATCATATCCTTATCCATCTGTTCAGTAACGTGAGaa > 1:1485478/1‑91 (MQ=255) aaaaTACGCTCAGATTTGAGCGCATTATCCAAGTTTTACCTGTTCAAGTTTGTTCATCATATCCTTATCCATCTGTTCAGTAACGTGAGaa > 1:1485477/1‑91 (MQ=255) aaaTACGCTCAGATTTGAGCGCATTATCCAAGTTTTACCTGTTCAAGTTTGTTCATCATATCCTTATCCATCTGTTCAGTAACGTGAGAAt < 1:1279998/91‑1 (MQ=255) aaaTACGCTCAGATTTGAGCGCATTATCCAAGTTTTACCTGTTCAAGTTTGTTCATCATATCCTTATCCATCTGTTCAGTAACGTGAGAAt < 1:2559339/91‑1 (MQ=255) aaTACGCTCAGATTTGAGCGCATTATCCAAGTTTTACCTGTTCAAGTTTGTTCATCATATCCTTATCCATCTGTTCAGTAACGTGAGAATa < 1:381360/91‑1 (MQ=255) tACGCTCAGATTTGAGCGCATTATCCAAGTTTTACCTGTTCAAGTTTGTTCATCATATCCTTATCCATCTGTTCAGTAACGTGAGAATaaa < 1:2310180/91‑1 (MQ=255) tACGCTCAGATTTGAGCGCATTATCCAAGTTTTACCTGTTCAAGTTTGTTCATCATATCCTTATCCATCTGTTCAGTAACGTGAGAATaaa < 1:4007460/91‑1 (MQ=255) gcGCTCAAATCTGAGCGTATTATCCAAGTTTTACCTGTTCAAGTTTGTTCATCATATCCTTATCCATCTGTTCAGTAACGTGAGAATAAAt > 1:3929530/2‑91 (MQ=255) cGCTCAGATTTGAGCGCATTATCCAAGTTTTACCTGTTCAAGTTTGTTCATCATATCCTTATCCATCTGTTCAGTAACGTGAGAATAAATg > 1:642296/1‑91 (MQ=255) cGCTCAGATTTGAGCGCATTATCCAAGTTTTACCTGTTCAAGTTTGTTCATCATATCCTTATCCATCTGTTCAGTAACGTGAGAATAAATg < 1:3490857/91‑1 (MQ=255) cGCTCAGATTTGAGCGCATTATCCAAGTTTTACCTGTTCAAGTTTGTTCATCATATCCTTATCCATCTGTTCAGTAACGTGAGAATAAATg > 1:842169/1‑91 (MQ=255) cGCTCAGATTTGAGCGCATTATCCAAGTTTTACCTGTTCAAGTTTGTTCATCATATCCTTATCCATCTGTTCAGTAACGTGAGAATAAATg < 1:3490568/91‑1 (MQ=255) cGCTCAGATTTGAGCGCATTATCCAAGTTTTACCTGTTCAAGTTTGTTCATCAGATCCTTATCCATCTGTTCAGTAACGTGAGAATAAATg < 1:3490704/91‑1 (MQ=255) cGCTCAGATTTGAGCGCATTATCCAAGTTCTACCTGTTCAAGTTTGTTCATCATATCCTTATCCATCTGTTCAGTAACGTGAGAATAAATg > 1:205584/1‑91 (MQ=255) cGCTCAAATCTGAGCGTATTATCCAAGTTTTACCTGTTCAAGTTTGTTCATCATATCCTTATCCATCTGTTCAGTAACGTGAGAATAAATg > 1:3711002/1‑91 (MQ=255) gCTCAAATCTGAGCGTATTATCCAAGTTTTACCTGTTCAAGTTTGTTCATCATATCCTTATCCATCTGTTCAGTAACGTGAGAATAAATgg > 1:2685397/1‑91 (MQ=255) gCTCAAATCTGAGCGTATTATCCAAGTTTTACCTGTTCAAGTTTGTTCATCATATCCTTATCCATCTGTTCAGTAACGTGAGAATAAATgg > 1:708688/1‑91 (MQ=255) cTCAGATTTGAGCGCATTATCCAAGTTTTACCTGTTCAAGTTTGTTCATCATATCCTTATCCATCTGTTCAGTAACGTGAGAATAAATGGa > 1:1112307/1‑91 (MQ=255) tCAGATTTGAGCGCATTATCCAAGTTTTACCTGTTCAAGTTTGTTCATCATATCCTTATCCATCTGTTCAGTAACGTGAGAATAAATGGaa > 1:1377068/1‑91 (MQ=255) gATTTGAGCGCATTATCCAAGTTTTACCTGTTCAAGTTTGTTCATCATATCCTTATCCATCTGTTCAGTAACGTGAGAATAAATGGAAAgt < 1:2318374/91‑1 (MQ=255) gATTTGAGCGCATTATCCAAGTTTTACCTGTTCAAGTTTGTTCATCATATCCTTATCCATCTGTTCAGTAACGTGAGAATAAATGGAAAgt < 1:253312/91‑1 (MQ=255) tctGAGCGTATTATCCAAGTTTTACCTGTTCAAGTTTGTTCATCATATCCTTATCCATCTGTTCAGTAACGTGAGAATAAATGGAAAgtgt > 1:3360401/3‑91 (MQ=255) ttGAGCGCATTATCCAAGTTTTACCTGTTCAAGTTTGTTCATCATATCCTTATCCATCTGTTCAGTAACGTGAGAATAAATGGAAAGtgtt > 1:178252/1‑91 (MQ=255) tGAGCGCATTATCCAAGTTTTACCTGTTCAAGTTTGTTCATCATATCCTTATCCATCTGTTCAGTAACGTGAGAATAAATGGAAAGtgttg < 1:2322538/91‑1 (MQ=255) tGAGCGCATTATCCAAGTTTTACCTGTTCAAGTTTGTTCATCATATCCTTATCCATCTGTTCAGTAACGTGAGAATAAATGGAAAGtgttg > 1:1221626/1‑91 (MQ=255) aGCGCATTATCCAAGTTTTACCTGTTCAAGTTTGTTCATCATATCCTTATCCATCTGTTCAGTAACGTGAGAATAAATGGAAAGTGTTGTa < 1:439199/91‑1 (MQ=255) | TGTGGTATTGAAAATAAAAAAGGGCACAAAAGGGGCAGTATATGCAAATTATCGAATTTTAAACAAAAAAATACGCTCAGATTTGAGCGCATTATCCAAGTTTTACCTGTTCAAGTTTGTTCATCATATCCTTATCCATCTGTTCAGTAACGTGAGAATAAATGGAAAGTGTTGTA > USA300TCH1516_ALE/895853‑896028 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |