| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | USA300TCH1516_ALE | 917,327 | T→G | 11.6% | intergenic (+86/+244) | sufB_2 → / ← USA300HOU_RS04545 | FeS cluster assembly protein SufB/hypothetical protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | USA300TCH1516_ALE | 917,327 | 0 | T | G | 11.6% | 364.3 / 31.8 | 112 | intergenic (+86/+244) | sufB_2/USA300HOU_RS04545 | FeS cluster assembly protein SufB/hypothetical protein |
| Reads supporting (aligned to +/- strand): ref base T (52/47); new base G (6/7); total (58/54) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 7.71e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.63e-01 | |||||||||||
Only 100 of 115 total aligned reads displayed.
ATAGCTTTAAACCGCGTTGTTAAGCCATTCTTGACTTCCGAAAATGGCTATTGATACCATTTTGATACTGAATATAAC‑‑AAAAAGCCACATTACTGTGGCTTTTTTTGTTTTATAACTAAATCGGATTGATAGATAAGCTTTGTACTTATTTATATCAGTTCGATTTTTTGATTGGTGTAA > USA300TCH1516_ALE/917238‑917417 | aGCTTTAAACCGCGTTGTTAAGCCATTCTTGACTTCCGAAAATGGCTATTGATACCATTTTGATACTGAATATAAC‑‑AAAAAGCCACATTAc < 1:2661314/91‑1 (MQ=255) aGCTTGAAACCGCGTTGTTAAGCCAGTCTTGACTTCCGAGAATGGCTATTGATGCCATTTTGATACTGAATATAAC‑‑AAAAAGCCACATTAc < 1:3864131/91‑1 (MQ=255) gCTTTAAACGGCGTTGTTAAGCCATTCTTGACTTCCGAAAATGGCTATTGATACCATTTTGATACTGAATATAAC‑‑AAAAAGCCACATTACt < 1:3965786/91‑1 (MQ=255) tttAAACCGCGTTGTTAAGCCATTCTTGACTTCCGAAAATGGCTATTGATACCATTTTGATACTGAATATAAC‑‑AAAAAGCCACATTACtgt > 1:2624031/1‑91 (MQ=255) tttAAACCGCGTTGTTAAGCCATTCTTGACTTCCGAAAATGGCTATTGATACCATTTTGATACTGAATATAAC‑‑AAAAAGCCACATTACtgt < 1:2939589/91‑1 (MQ=255) ttAAACCGCGTTGTTAAGCCATTCTTGACTTCCGAAAATGGCTATTGATACCATTTTGATACTGAATATAAC‑‑AAAAAGTCACATTACtgtg < 1:3198827/91‑1 (MQ=255) ttAAACCGCGTTGTTAAGCCATTCTTGACTTCCGAAAATGGCTATTGATACCATTTTGATACTGAATATAAC‑‑AAAAAGCCACATTACtgtg > 1:1518362/1‑91 (MQ=255) ttAAACCGCGTTGTTAAGCCATTCTTGACTTCCGAAAATGGCTATTGATACCATTTTGATACTGAATATAAC‑‑AAAAAGCCACAGTAAtgtg < 1:3140135/91‑1 (MQ=255) ttAAACCGCGTTGTTAAGCCATTCTTGACTTCCGAAAATGGCTATTGATACCATTTTGATACTGAATATAAC‑‑AAAAAGCCACAGTAAtgtg < 1:3892007/91‑1 (MQ=255) aaaCCGCGTTGTTAAGCCATTCTTGACTTCCGAAAATGGCTATTGATACCATTTTGATACTGAATATAAC‑‑AAAAAGCCACATTACTGTGGc > 1:293734/1‑91 (MQ=255) aaaCCGCGTTGTTAAGCCATTCTTGACTTCCGAAAATGGCTATTGATACCATTTTGATACTGAATATAAC‑‑AAAAAGCCACATTACTGTGGc > 1:1930653/1‑91 (MQ=255) aaaCCGCGTTGTTAAGCCATTCTTGACTTCCGAAAATGGCTATTGATACCATTTTGATACTGAATATAAC‑‑AAAAAGCCACAGTAATGTGGc < 1:2300848/91‑1 (MQ=255) aaaCCGCGTTGTTAAGCCATTCTTGACTTCCGAAAATGGCTATTGATACCATTTTGATACTGAATATAAC‑‑AAAAAGCCACAGTAATGTGGc < 1:3055960/91‑1 (MQ=255) aaCCGCGTTGTTAAGCCATTCTTGACTTCCGAAAATGGCTATTGATACCATTTTGATACTGAATATAAC‑‑AAAAAGCCACATTACTGTGGCt < 1:976136/91‑1 (MQ=255) aaCCGCGTTGTTAAGCCATTCTTGACTTCCGAAAATGGCTATTGATACCATTTTGATACTGAATATAAC‑‑AAAAAGCCACATTACTGTGGCt < 1:974480/91‑1 (MQ=255) gcgTTGTTAAGCCATTCTTGACTTCCGAAAATGGCTATTGATACCATTTTGATACTGAATATAAC‑‑AAAAAGCCACATTACTGTGGCttttt < 1:529192/91‑1 (MQ=255) ttgttAAGCCATTCTTGACTTCCGAAAATGGCTATTGATACCATTTTGATACTGAATATAACAAAAAAAGCCACAGTAATGTGGCtttttg < 1:3159256/91‑2 (MQ=37) ttgttAAGCCATTCTTGACTTCCGAAAATGGCTATTGATACCATTTTGATACTGAATATAAC‑‑AAAAAGCCACATTACTGTGGCTTTTTTTg > 1:2878837/1‑91 (MQ=255) ttgttAAGCCATTCTTGACTTCCGAAAATGGCTATTGATACCATTTTGATACTGAATATAAC‑‑AAAAAGCCACATTACTGTGGCTTTTTTTg < 1:3711510/91‑1 (MQ=255) ttgttAAGCCATTCTTGACTTCCGAAAATGGCTATTGATACCATTTTGATACTGAATATAAC‑‑AAAAAGCCACAGTAATGTGGCtttttgtt < 1:4075292/91‑4 (MQ=38) tgttAAGCCATTCTTGACTTCCGAAAATGGCTATTGATACCATTTTGATACTGAATATAAC‑‑AAAAAGCCACATTACTGTGGCTTTTTTTGt < 1:2135786/91‑1 (MQ=255) gttAAGCCATTCTTGACTTCCGAAAATGGCTATTGATACCATTTTGATACTGAATATAAC‑‑AAAAAGCCACATTACTGTGGCTTTTTTTGtt > 1:1781442/1‑91 (MQ=255) gttAAGCCATTCTTGACTTCCGAAAATGGCTATTGATACCATTTTGATACTGAATATAAC‑‑AAAAAGCCACATTACTGTGGCTTTTTTTGtt > 1:2049917/1‑91 (MQ=255) ttAAGCCATTCTTGACTTCCGAAAATGGCTATTGATACCATTTTGATACTGAATAAAACAAAAAAAGCCACAGTAATGTGGCtttttgtta < 1:877259/91‑5 (MQ=18) tAAGCCATTCTTGACTTCCGAAAATGGCTATTGATACCATTTTGATACTGAATATAAC‑‑AAAAAGCCACATTACTGTGGCTTTTTTTGtttt < 1:1123408/91‑1 (MQ=255) aaGCCATTCTTGACTTCCGAAAATGGCTATTGATACCATTTTGATACTGAATATAAC‑‑AAAAAGCCACATTACTGTGGCTTTTTTTGTTTta > 1:2699162/1‑91 (MQ=255) aaGCCATTCTTGACTTCCGAAAATGGCTATTGATACCATTTTGATACTGAATATAAC‑‑AAAAAGCCACATTACTGTGGCTTTTTTTGTTTta > 1:2517928/1‑91 (MQ=255) gCCATTCTTGACTTCCGAAAATGGCTATTGATACCATTTTGATACTGAATATAAC‑‑AAAAAGCCACATTACTGTGGCTTTTTTTGTTTtata < 1:2838527/91‑1 (MQ=255) gCCATTCTTGACTTCCGAAAATGGCTATTGATACCATTTTGATACTGAATATAAC‑‑AAAAAGCCACATTACTGTGGCTTTTTTTGTTTtata < 1:1697510/91‑1 (MQ=255) cATTCTTGACTTCCGAAAATGGCTATTGATACCATTTTGATACTGAATATAAC‑‑AAAAAGCCACATTACTGTGGCTTTTTTTGTTTTATAAc < 1:1427289/91‑1 (MQ=255) aTTCTTGACTTCCGAAAATGGCTATTGATACCATTTTGATACTGAATATAAC‑‑AAAAAGCCACATTACTGTGGCTTTTTTTGTTTTATAACt < 1:1132821/91‑1 (MQ=255) ttCTTGACTTCCGAAAATGGCTATTGATACCATTTTGATACTGAATATAAC‑‑AAAAAGCCACATTACTGTGGCTTTTTTTGTTTTATAACTa > 1:1245799/1‑91 (MQ=255) ttCTTGACTTCCGAAAATGGCTATTGATACCATTTTGATACTGAATATAAC‑‑AAAAAGCCACATTACTGTGGCTTTTTTTGTTTTATAACTa > 1:1669528/1‑91 (MQ=255) ttCTTGACTTCCGAAAATGGCTATTGATACCATTTTGATACTGAATATAAC‑‑AAAAAGCCACATTACTGTGGCTTTTTTTGTTTTATAACTa > 1:387372/1‑91 (MQ=255) ttCTTGACTTCCGAAAATGGCTATTGATACCATTTTGATACTGAATATAAC‑‑AAAAAGCCACATTACTGTGGCTTTTTTTGTTTTATAACTa > 1:1245001/1‑91 (MQ=255) cTTGACTTCCGAAAATGGCTATTGATACCATTTTGATACTGAATATAAC‑‑AAAAAGCCACATTACTGTGGCTTTTTTTGTTTTATAACTaaa < 1:951708/91‑1 (MQ=255) cTTGACTTCCGAAAATGGCTATTGATACCATTTTGATACTGAATATAAC‑‑AAAAAGCCACATTACTGTGGCTTTTTTTGTTTTATAACTaaa > 1:3050782/1‑91 (MQ=255) ttGACTTCCGAAAATGGCTATTGATACCATTTTGATACTGAATATAAC‑‑AAAAAGCCACATTACTGTGGCTTTTTTTGTTTTATAACTAAAt > 1:957402/1‑91 (MQ=255) gACTTCCGAAAATGGCTATTGATACCATTTTGATACTGAATATAAC‑‑AAAAAGCCACATTACTGTGGCTTTTTTTGTTTTATAACTAAATCg > 1:1154070/1‑91 (MQ=255) gACTTCCGAAAATGGCTATTGATACCATTTTGATACTGAATATAAC‑‑AAAAAGCCACATTACTGTGGCTTTTTTTGTTTTATAACTAAATCg < 1:2656597/91‑1 (MQ=255) gACTTCCGAAAATGGCTATTGATACCATTTTGATACTGAATATAAC‑‑AAAAAGCCACATTACTGTGGCTTTTTTTGTTTTATAACTAAATCg < 1:2656598/91‑1 (MQ=255) gACTTCCGAAAATGGCTATTGATACCATTTTGATACTGAATATAAC‑‑AAAAAGCCACATTACTGTGGCTTTTTTTGTTTTATAACTAAATCg < 1:1943967/91‑1 (MQ=255) aCTTCCGAAAATGGCTATTGATACCATTTTGATACTGAATATAAC‑‑AAAAAGCCACATTACTGTGGCTTTTTTTGTTTTATAACTAAATCgg > 1:2790454/1‑91 (MQ=255) cTTCCGAAAATGGCTATTGATACCATTTTGATACTGAATATAAC‑‑AAAAAGCCACATTACTGTGGCTTTTTTTGGTTTATTACCAAAACggg > 1:4053079/1‑90 (MQ=255) gAAAATGGCTATTGATACCATTTTGATACTGAATATAAC‑‑AAAAAGCCACATTACTGTGGCTTTTTTTGTTTTATAACTAAATCGGATTgat > 1:1035495/1‑91 (MQ=255) gAAAATGGCTATTGATACCATTTTGATACTGAATATAAC‑‑AAAAAGCCACATTACTGTGGCTTTTTTTGTTTTATAACTAAATCGGATTgat < 1:1700123/91‑1 (MQ=255) aaaaTGGCTATTGATACCATTTTGATACTGAATATAAC‑‑AAAAAGCCACATTACTGTGGCTTTTTTTGTTTTATAACTAAATCGGATTgata < 1:2933791/91‑1 (MQ=255) tGGCTATTGATACCATTTTGATACTGAATATAAC‑‑AAAAAGCCACATTACTGTGGCTTTTTTTGTTTTATAACTAAATCGGATTgatagata < 1:3956750/91‑1 (MQ=255) tGGCTATTGATACCATTTTGATACTGAATATAAC‑‑AAAAAGCCACATTACTGTGGCTTTTTTTGTTTTATAACTAAATCGGATTgatagata < 1:3957300/91‑1 (MQ=255) cTATTGATACCATTTTGATACTGAATATAAC‑‑AAAAAGCCACATTACTGTGGCTTTTTTTGTTTTATAACTAAATCGGATTGATAGATAAGc < 1:3099234/91‑1 (MQ=255) tGATACCATTTTGATACTGAATATAAC‑‑AAAAAGCCACATTACTGTGGCTTTTTTTGTTTTATAACTAAATCGGATTGATAGATAAGCTTTg < 1:344842/91‑1 (MQ=255) aTACCATTTTGATACTGAATATAAC‑‑AAAAAGCCACATGACTGTGGCCTTTTTTGTTTTATAACTAAATCGGATTGATAGATAAGCTTTGTa > 1:3303949/1‑91 (MQ=255) aCCATTTTGATACTGAATATAAC‑‑AAAAAGCCACATTACTGTGGCTTTTTTTGTTTTATAACTAAATCGGATTGATAGATAAGCTTTGTACt > 1:513383/1‑91 (MQ=255) aCCATTTTGATACTGAATATAAC‑‑AAAAAGCCACATTACTGTGGCTTTTTTTGTTTTATAACTAAATCGGATTGATAGATAAGCTTTGTACt > 1:513462/1‑91 (MQ=255) ccATTTTGATACTGAATATAAC‑‑AAAAAGCCACATTACTGTGGCTTTTTTTGTTTTATAACTAAATCGGATTGATAGATAAGCTTTGTACtt > 1:540996/1‑91 (MQ=255) ccATTTTGATACTGAATATAAC‑‑AAAAAGCCACATTACTGTGGCTTTTTTTGTTTTATAACTAAATCGGATTGATAGATAAGCTTTGTACtt > 1:2395092/1‑91 (MQ=255) ccATTTTGATACTGAATATAAC‑‑AAAAAGCCACATTACTGTGGCTTTTTTTGTTTTATAACTAAATCGGATTGATAGATAAGCTTTGTACtt > 1:3470463/1‑91 (MQ=255) cATTTTGATACTGAATATAAC‑‑AAAAAGCCACATTACTGTGGCTTTTTTTGTTTTATAACTAAATCGGATTGATAGATAAGCTTTGTACtta > 1:2349707/1‑91 (MQ=255) cATTTTGATACTGAATATAAC‑‑AAAAAGCCACATTACTGTGGCTTTTTTTGTTTTATAACTAAATCGGATTGATAGATAAGCTTTGTACtta > 1:3784731/1‑91 (MQ=255) tttGATACTGAATATAAC‑‑AAAAAGCCACATTACTGTGGCTTTTTTTGTTTTATAACTAAATCGGATTGATAGATAAGCTTTGTACttattt < 1:2694304/91‑1 (MQ=255) ttGATACTGAATATAAC‑‑AAAAAGCCACATTACTGTGGCTTTTTTTGTTTTATAACTAAATCGGATTGATAGATAAGCTTTGTACttattta > 1:1314034/1‑91 (MQ=255) tGAATATAAC‑‑AAAAAGCCACATTACTGTGGCTTTTTTTGTTTTATAACTAAATCGGATTGATAGATAAGCTTTGTACTTATTTATATCAGt < 1:3053809/91‑1 (MQ=255) tGAATATAAC‑‑AAAAAGCCACATTACTGTGGCTTTTTTTGTTTTATAACTAAATCGGATTGATAGATAAGCTTTGTACTTATTTATATCAGt > 1:1113696/1‑91 (MQ=255) tGAATATAAC‑‑AAAAAGCCACATTACTGTGGCTTTTTTTGTTTTATAACTAAATCGGATTGATAGATAAGCTTTGTACTTATTTATATCAGt < 1:42727/91‑1 (MQ=255) tGAATATAAC‑‑AAAAAGCCACATTACTGTGGCTTTTTTTGTTTTATAACTAAATCGGATTGATAGATAAGCTTTGTACTTATTTATATCAGt < 1:2104105/91‑1 (MQ=255) gAATATAAC‑‑AAAAAGCCACATTACTGTGGCTTTTTTTGTTTTATAACTAAATCGGATTGATAGATAAGCTTTGTACTTATTTATATCAGtt > 1:1743600/1‑91 (MQ=255) aaTATAAC‑‑AAAAAGCCACATTACTGTGGCTTTTTTTGTTTTATAACTAAATCGGATTGATAGATAAGCTTTGTACTTATTTATATCAGTTc < 1:3794421/91‑1 (MQ=255) ataAC‑‑AAAAAGCCACATTACTGTGGCTTTTTTTGTTTTATAACTAAATCGGATTGATAGATAAGCTTTGTACTTATTTATATCAGTTCGAt > 1:4026730/1‑91 (MQ=255) ataAC‑‑AAAAAGCCACATTACTGTGGCTTTTTTTGTTTTATAACTAAATCGGATTGATAGATAAGCTTTGTACTTATTTATATCAGTTCGAt < 1:2219755/91‑1 (MQ=255) taAC‑‑AAAAAGCCACATTACTGTGGCTTTTTTTGTTTTATAACTAAATCGGATTGATAGATAAGCTTTGTACTTATTTATATCAGTTCGAtt > 1:3468982/1‑91 (MQ=255) taAC‑‑AAAAAGCCACATTACTGTGGCTTTTTTTGTTTTATAACTAAATCGGATTGATAGATAAGCTTTGTACTTATTTATATCAGTTCGAtt > 1:342834/1‑91 (MQ=255) aaC‑‑AAAAAGCCACATTACTGTGGCTTTTTTTGTTTTATAACTAAATCGGATTGATAGATAAGCTTTGTACTTATTTATATCAGTTCGAttt > 1:356895/1‑91 (MQ=255) aC‑‑AAAAAGCCACATTACTGTGGCTTTTTTTGTTTTATAACTAAATCGGATTGATAGATAAGCTTTGTACTTATTTATATCAGTTCGAtttt < 1:2665246/91‑1 (MQ=255) aC‑‑AAAAAGCCACATTACTGTGGCTTTTTTTGTTTTATAACTAAATCGGATTGATAGATAAGCTTTGTACTTATTTATATCAGTTCGAtttt < 1:828018/91‑1 (MQ=255) aC‑‑AAAAAGCCACATTACTGTGGCTTTTTTTGTTTTATAACTAAATCGGATTGATAGATAAGCTTTGTACTTATTTATATCAGTTCGAtttt < 1:1903357/91‑1 (MQ=255) aC‑‑AAAAAGCCACATTACTGTGGCTTTTTTTGTTTTATAACTAAATCGGATTGATAGATAAGCTTTGTACTTATTTATATCAGTTCGAtttt < 1:2466070/91‑1 (MQ=255) aC‑‑AAAAAGCCACATTACTGTGGCTTTTTTTGTTTTATAACTAAATCGGATTGATAGATAAGCTTTGTACTTATTTATATCAGTTCGAtttt < 1:2465940/91‑1 (MQ=255) aC‑‑AAAAAGCCACATTACTGTGGCTTTTTTTGTTTTATAACTAAATCGGATTGATAGATAAGCTTAGTACTTATTTATATCAGTTCGCtttt > 1:637762/1‑91 (MQ=255) c‑‑AAAAAGCCACATTACTGTGGCTTTTTTTGTTTTATAACTAAATCGGATTGATAGATAAGCTTTGTACTTATTTATATCAGTTCGAttttt > 1:1177153/1‑91 (MQ=255) c‑‑AAAAAGCCACATTACTGTGGCTTTTTTTGTTTTATAACTAAATCGGATTGATAGATAAGCTTTGTACTTATTTATATCAGTTCGAttttt > 1:1177186/1‑91 (MQ=255) c‑‑AAAAAGCCACATTACTGTGGCTTTTTTTGTTTTATAACTAAATCGGATTGATAGATAAGCTTTGTACTTATTTATATCAGTTCGAttttt > 1:691614/1‑91 (MQ=255) aaaaaGCCACATTACTGTGGCTTTTTTTGTTTTATAACTAAATCGGATTGATAGATAAGCTTTGTACTTATTTATATCAGTTCGAtttttt > 1:513211/1‑91 (MQ=255) aaaaGCCACATTACTGTGGCTTTTTTTGTTTTATAACTAAATCGGATTGATAGATAAGCTTTGTACTTATTTATATCAGTTCGATTTTTTg > 1:1267283/1‑91 (MQ=255) aaaGCCACATTACTGTGGCTTTTTTTGTTTTATAACTAAATCGGATTGATAGATAAGCTTTGTACTTATTTATATCAGTTCGATTTTTTGa < 1:1688587/91‑1 (MQ=255) aaGCCACATTACTGTGGCTTTTTTTGTTTTATAACTAAATCGGATTGATAGATAAGCTTTGTACTTATTTATATCAGTTCGATTTTTTGAt > 1:2274193/1‑91 (MQ=255) aaGCCACATTACTGTGGCTTTTTTTGTTTTATAACTAAATCGGATTGATAGATAAGCTTTGTACTTATTTATATCAGTTCGATTTTTTGAt < 1:194659/91‑1 (MQ=255) aaGCCACAGTAATGTGGCTTTTTTTGTTTTATAACTAAATCGGATTGATAGATAAGCTTTGTACTTATTTATATCAGTTCGATTTTTTGAt > 1:2044286/1‑91 (MQ=255) ccACATTACTGTGGCTTTTTTTGTTTTATAACTAAATCGGATTGATAGATAAGCTTTGTACTTATTTATATCAGTTCGATTTTTTGATTgg < 1:534469/91‑1 (MQ=255) ccACATTACTGTGGCTTTTTTTGTTTTATAACTAAATCGGATTGATAGATAAGCTTTGTACTTATTTATATCAGTTCGATTTTTTGATTgg > 1:2293358/1‑91 (MQ=255) ccACATTACTGTGGCTTTTTTTGTTTTATAACTAAATCGGATTGATAGATAAGCTTTGTACTTATTTATATCAGTTCGATTTTTTGATTgg > 1:1818383/1‑91 (MQ=255) ccACATTACTGTGGCTTTTTTTGTTTTATAACTAAAACGGATTGATAGATAAGCTTTGTACTTATTTATATCAGTTCGATTTTTTGATTgg > 1:1644254/1‑91 (MQ=255) ccACAGTAATGTGGCTTTTTTTGTTTTATAACTAAATCGGATTGATAGATAAGCTTTGTACTTATTTATATCAGTTCGATTTTTTGATTgg > 1:3000398/1‑91 (MQ=255) cacaGTAATGTGGCTTTTTTTGTTTTATAACTAAATCGGATTGATAGATAAGCTTTGTACTTATTTATATCAGTTCGATTTTTTGATTGgt > 1:937441/1‑91 (MQ=255) acaTTACTGTGGCTTTTTTTGTTTTATAACTAAATCGGATTGATAGATAAGCTTTGTACTTATTTATATCAGTTCGATTTTTTGATTGgtg < 1:150084/91‑1 (MQ=255) acaTTACTGTGGCTTTTTTTGTTTTATAACTAAATCGGATTGATAGATAAGCTTTGTACTTATTTATATCAGTTCGATTTTTTGATTGgtg > 1:887488/1‑91 (MQ=255) caTTACTGTGGCTTTTTTTGTTTTATAACTAAATCGGATTGATAGATAAGCTTTGTACTTATTTATATCAGTTCGATTTTTTGATTGgtgt < 1:2011908/91‑1 (MQ=255) caTTACTGTGGCTTTTTTTGTTTTATAACTAAATCGGATTGATAGATAAGCTTTGTACTTATTTATATCAGTTCGATTTTTTGATTGgtgt < 1:967804/91‑1 (MQ=255) caTTACTGTGGCTTTTTTTGTTTTATAACTAAATCGGATTGATAGATAAGCTTTGTACTTATTTATATCAGTTCGATTTTTTGATTGgtgt > 1:3715589/1‑91 (MQ=255) ttACTGTGGCTTTTTTTGTTTTATAACTAAATCGGATTGATAGATAAGCTTTGTACTTATTTATATCAGTTCGATTTTTTGATTGGTGTaa > 1:903745/1‑91 (MQ=255) ttACTGTGGCTTTTTTTGTTTTATAACTAAATCGGATTGATAGATAAGCTTTGTACTTATTTATATCAGTTCGATTTTTTGATTGGTGTaa > 1:903865/1‑91 (MQ=255) | ATAGCTTTAAACCGCGTTGTTAAGCCATTCTTGACTTCCGAAAATGGCTATTGATACCATTTTGATACTGAATATAAC‑‑AAAAAGCCACATTACTGTGGCTTTTTTTGTTTTATAACTAAATCGGATTGATAGATAAGCTTTGTACTTATTTATATCAGTTCGATTTTTTGATTGGTGTAA > USA300TCH1516_ALE/917238‑917417 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |