| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | USA300TCH1516_ALE | 1,042,796 | G→A | 16.9% | intergenic (+26/+63) | tagE_3 → / ← catD | Poly(glycerol‑phosphate) alpha‑glucosyltransferase/Putative oxidoreductase CatD |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | USA300TCH1516_ALE | 1,042,796 | 0 | G | A | 16.9% | 332.1 / 54.8 | 136 | intergenic (+26/+63) | tagE_3/catD | Poly(glycerol‑phosphate) alpha‑glucosyltransferase/Putative oxidoreductase CatD |
| Reads supporting (aligned to +/- strand): ref base G (46/67); new base A (16/7); total (62/74) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 2.02e-02 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.73e-01 | |||||||||||
Only 100 of 137 total aligned reads displayed.
CATTATAGAAAAATATTCAACGGAATCAATATTAGAAAAATGGTTAAATCTTTTCAATAGCTAAATGAAAAAATCCTAGGTATTCATGAGTACCTAGGATTTTTACGCATGATAAATACAAAAAAAGAGAGGATAGTCCTCTCAAACAATAGTTAATAAAATTGTAGCCATTTCTTCCAG > USA300TCH1516_ALE/1042707‑1042886 | cATTATAGAAAAATATTCAACGGAATCAATATTAGAAAAATGGTTAAATCTTTTCAATAGCTAAATGAAAAAATCCTAGGTATTCATGAGt > 1:528094/1‑91 (MQ=255) aTTATAGAAAAATATTCAACGGAATCAATATTAGAAAAATGGTTAAATCTTTTCAATAGCTAAATGAAAAAATCCTAGGTATTCATGAGTa > 1:3791866/1‑91 (MQ=255) tcataGAAAAATATTCAACGGAATCAATATTAGAAAAATGGTTAAATCTTTTCAATAGCTAAATGAAAAAATCCTAGGTATTCATGAGTAc > 1:1891896/3‑91 (MQ=255) ataGAAAAATATTCAACGGAATCAATATTAGAAAAATGGTTAAATCTTTTCAATAGCTAAATGAAAAAATCCTAGGTATTCATGAGTACCt > 1:2700011/1‑91 (MQ=255) ataGAAAAATATTCAACGGAATCAATATTAGAAAAATGGTTAAATCTTTTCAATAGCTAAATGAAAAAATCCTAGGTATTCATGAGTACCt < 1:3714556/91‑1 (MQ=255) ataGAAAAATATTCAACGGAATCAATATTAGAAAAATGGTTAAATCTTTTCAATAGCTAAATGAAAAAATCCTAGGTATTCATGAGTACCt < 1:1386839/91‑1 (MQ=255) ataGAAAAATATTCAACGGAATCAATATTAGAAAAATGGTTAAATCTTTTCAATAGCTAAATGAAAAAATCCTAGGTACTCATGAATACCt < 1:489912/91‑1 (MQ=255) ataGAAAAATATTCAACGGAATCAATATTAGAAAAATGGTTAAATCTTTTCAATAGCTAAATGAAAAAATCCTAGGTACTCATGAATACCt < 1:3011657/91‑1 (MQ=255) taGAAAAATATTCAACGGAATCAATATTAGAAAAATGGTTAAATCTTTTCAATAGCTAAATGAAAAAATCCTAGGTATTCATGAGTACCTa > 1:704906/1‑91 (MQ=255) aGAAAAATATTCAACGGAATCAATATTAGAAAAATGGTTAAATCTTTTCAATAGCTAAATGAAAAAATCCTAGGTATTCATGAGTACCTAg < 1:2577931/91‑1 (MQ=255) aGAAAAATATTCAACGGAATCAATATTAGAAAAATGGTTAAATCTTTTCAATAGCTAAATGAAAAAATCCTAGGTACTCATGAATACCTAg < 1:1697526/91‑1 (MQ=255) aaaaTATTCAACGGAATCAATATTAGAAAAATGGTTAAATCTTTTCAATAGCTAAATGAAAAAATCCTAGGTACTCATGAATACCTAGGAt < 1:3131360/91‑1 (MQ=255) aaaTATTCAACGGAATCAATATTAGAAAAATTGTTAAATCTTTTCAATAGCTAAATGAAAAAATCCTAGGTATTCATGAGTACCTAGGAtt > 1:3434046/1‑91 (MQ=255) atatTCAACGGAATCAATATTAGAAAAATGGTTAAATCTTTTCAATAGCTAAATGAAAAAATCCTAGGTATTCATGAGTACCTAGGAtttt > 1:2130883/1‑91 (MQ=255) atatTCAACGGAATCAATATTAGAAAAATGGTTAAATCTTTTCAATAGCTAAATGAAAAAATCCTAGGTACTCATGAACACCTAGGAtttt < 1:3181582/91‑1 (MQ=38) cAACGGAATCAATATTAGAAAAATGGTTAAATCTTTTCAATAGCTAAATGAAAAAATCCTAGGTATTCATGAGTACCTAGGATTTTTACga > 1:1230325/1‑90 (MQ=255) cAACGGAATCAATATTAGAAAAATGGTTAAATCTTTTCAATAGCTAAATGAAAAAATCCTAGGTATTCATGAGTACCTAGGATTTTTACGc > 1:650750/1‑91 (MQ=255) aCGGAATCAATATTAGAAAAATGGTTAAATCTTTTCAATAGCTAAATGAAAAAATCCTAGGTATTCATGAGTACCTAGGATTTTTACGCAt > 1:1378262/1‑91 (MQ=255) ggAATCAATATTAGAAAAATGGTTAAATCTTTTCAATAGCTAAATGAAAAAATCCTAGGTATTCATGAGTACCTAGGATTTTTACGCATGa < 1:1740561/91‑1 (MQ=255) ggAATCAATATTAGAAAAATGGTTAAATCTTTTCAATAGCTAAATGAAAAAATCCTAGGTATTCATGAGTACCTAGGATTTTTACGCATGa < 1:403759/91‑1 (MQ=255) ggAATCAATATTAGAAAAATGGTTAAATCTTTTCAATAGCTAAATGAAAAAATCCTAGGTATTCATGAGTACCTAGGATTTTTACGCATGa < 1:1483087/91‑1 (MQ=255) aaTCAATATTAGAAAAATGGTTAAATCTTTTCAATAGCTAAATGAAAAAATCCTAGGTATTCATGAGTACCTAGGATTTTTACGCATGATa < 1:663873/91‑1 (MQ=255) aTCAATATTAGAAAAATGGTTAAATCTTTTCAATAGCTAAATGAAAAAATCCTAGGTATTCATGAGTACCTAGGATTTTTACGCATGATaa > 1:1826283/1‑91 (MQ=255) aTCAATATTAGAAAAATGGTTAAATCTTTTCAATAGCTAAATGAAAAAATCCTAGGTATTCATGAGTACCTAGGATTTTTACGCATGATaa > 1:863777/1‑91 (MQ=255) tCAATATTAGAAAAATGGTTAAATCTTTTCAATAGCTAAATGAAAAAATCCTAGGTATTCATGAGTACCTAGGATTTTTACGCATGATaaa < 1:2890135/91‑1 (MQ=255) tCAATATTAGAAAAATGGTTAAATCTTTTCAATAGCTAAATGAAAAAATCCTAGGTATTCATGAGTACCTAGGATTTTTACGCATGATaaa < 1:1144692/91‑1 (MQ=255) cAATATTAGAAAAATGGTTAAATCTTTTCAATAGCTAAATGAAAAAATCCTAGGTATTCATGAGTACCTAGGATTTTTACGCATGATAAAt < 1:3661973/91‑1 (MQ=255) atatTAGAAAAATGGTTAAATCTTTTCAATAGCTAAATGAAAAAATCCTAGGTATTCATGAGTACCTAGGATTTTTACGCATGATAAATAc < 1:2745246/91‑1 (MQ=255) atatTAGAAAAATGGTTAAATCTTTTCAATAGCTAAATGAAAAAATCCTAGGTATTCATGAGTACCTAGGATTTTTACGCATGATAAATAc < 1:2052571/91‑1 (MQ=255) atatTAGAAAAATGGTTAAATCTTTTCAATAGCTAAATGAAAAAATCCTAGGTATTCATGAGTACCTAGGATTTTTACGCATGATAAATAc < 1:2802448/91‑1 (MQ=255) ttAGAAAAATGGTTAAATCTTTTCAATAGCTAAATGAAAAAATCCTAGGTATTCATGAGTACCTAGGATTTTTACGCATGATAAATACaaa < 1:1958583/91‑1 (MQ=255) ttAGAAAAATGGTTAAATCTTTTCAATAGCTAAATGAAAAAATCCTAGGTATTCATGAGTACCTAGGATTTTTACGCATGATAAATACaaa > 1:4137022/1‑91 (MQ=255) tAGAAAAATGGTGAAATCTTTTCAATAGCTAAATGAAAAAATCCTAGGTATTCATGAGTACCTAGGATTTTTACGCATGATAAATACaaaa > 1:3175551/1‑91 (MQ=255) aGAAAAATGGTTAAATCTTTTCAATAGCTAAATGAAAAAATCCTAGGTATTCATGAGTACCTAGGATTTTTACGCATGATAAATACaaaaa < 1:1699423/91‑1 (MQ=255) gAAAAATGGTTAAATCTTTTCAATAGCTAAATGAAAAAATCCTAGGTATTCATGAGTACCTAGGATTTTTACGCATGATAAATACaaaaaa < 1:1810952/91‑1 (MQ=255) aTGGTTAAATCTTTTCAATAGCTAAATGAAAAAATCCTAGGTATTCATGAGTACCTAGGATTTTTACGCATGATAAATACAAAAAAagaga > 1:793145/1‑91 (MQ=255) gTTAAATCTTTTCAATAGCTAAATGAAAAAATCCTAGGTATTCATGAGTACCTAGGATTTTTACGCATGATAAATACAAAAAAAGAGAGGa < 1:3544883/91‑1 (MQ=255) gTTAAATCTTTTCAATAGCTAAATGAAAAAATCCTAGGTATTCATGAGTACCTAGGATTTTTACGCATGATAAATACAAAAAAAGAGAGGa > 1:143617/1‑91 (MQ=255) tAAATCTTTTCAATAGCTAAATGAAAAAATCCTAGGTATTCATGAGTACCTAGGATTTTTACGCATGATAAATACAAAAAAAGAGAGGATa > 1:1016961/1‑91 (MQ=255) tAAATCTTTTCAATAGCTAAATGAAAAAATCCTAGGTATTCATGAGTACCTAGGATTTTTACGCATGATAAATACAAAAAAAGAGAGGATa > 1:1019042/1‑91 (MQ=255) aaaTCTTTTCAATAGCTAAATGAAAAAATCCTAGGTATTCATGAGTACCTAGGATTTTTACGCATGATAAATACAAAAAAAGAGAGGATAg < 1:2277584/91‑1 (MQ=255) aaaTCTTTTCAATAGCTAAATGAAAAAATCCTAGGTATTCATGAGTACCTAGGATTTTTACGCATGATAAATACAAAAAAAGAGAGGATAg < 1:2278182/91‑1 (MQ=255) aaaTCTTTTCAATAGCTAAATGAAAAAATCCTAGGTATTCATGAGTACCTAGGATTTTTACGCATGATAAATACAAAAAAAGAGAGGATAg < 1:2278222/91‑1 (MQ=255) aaTCTTTTCAATAGCTAAATGAAAAAATCCTAGGTATTCATGAGTACCTAGGATTTTTACGCATGATAAATACAAAAAAAGAGAGGATAGt < 1:3260386/91‑1 (MQ=255) aaTCTTTTCAATAGCTAAATGAAAAAATCCTAGGTATTCATGAGTACCTAGGATTTTTACGCATGATAAATACAAAAAAAGAGAGGATAGt < 1:3072436/91‑1 (MQ=255) aaTCTTTTCAATAGCTAAATGAAAAAATCCTAGGTATTCATGAGTACCTAGGATTTTTACGCATGATAAATACAAAAAAAGAGAGGATAGt < 1:3260805/91‑1 (MQ=255) aTCTTTTCAATAGCTAAATGAAAAAATCCTAGGTATTCATGAGTACCTAGGATTTTTACGCATGATAAATACAAAAAAAGAGAGGATAGTc < 1:97942/91‑1 (MQ=255) aTCTTTTCAATAGCTAAATGAAAAAATCCTAGGTATTCATGAGTACCTAGGATTTTTACGCATGATAAATACAAAAAAAGAGAGGATAGTc < 1:98024/91‑1 (MQ=255) aTCTTTTCAATAGCTAAATGAAAAAATCCTAGGTATTCATGAGTACCTAGGATTTTTACGCATGATAAATACAAAAAAAGAGAGGATAGTc < 1:1625607/91‑1 (MQ=255) cTTTTCAATAGCTAAATGAAAAAATCCTAGGTATTCATGAGTACCTAGGATTTTTACGCCTGATAAATACAAAAAACGAGAGGATAGTCct > 1:921297/1‑91 (MQ=255) tttCAATAGCTAAATGAAAAAATCCTAGGTATTCATGAGTACCTAGGATTTTTACGCATGATAAATACAAAAAAAGAGAGGATAGTCctct < 1:3893780/91‑1 (MQ=255) tttCAATAGCTAAATGAAAAAATCCTAGGTATTCATGAGTACCTAGGATTTTTACGCATGATAAATACAAAAAAAGAGAGGATAGTCctct < 1:3642115/91‑1 (MQ=255) tttCAATAGCTAAATGAAAAAATCCTAGGTATTAATGAGTACCTAGGATTTTTACGCATGATAAATACAAAAAAAGAGAGGATAGTCctct < 1:3391995/91‑1 (MQ=255) aaTAGCTAAATGAAAAAATCCTAGGTATTCATGAGTACCTAGGATTTTTACGCATGATAAATACAAAAAAAGAGAGGATAGTCCTCTCaaa < 1:4101994/91‑1 (MQ=255) aaTAGCTAAATGAAAAAATCCTAGGTATTCATGAGTACCTAGGATTTTTACGCATGATAAATACAAAAAAAGAGAGGATAGTCCTCTCaaa < 1:1915549/91‑1 (MQ=255) aTAGCTAAATGAAAAAATCCTAGGTATTCATGAGTACCTAGGATTTTTACGCATGAAAAATACAAAAAAAGAGAGGATAGTCCTCTCAAAc > 1:783218/1‑91 (MQ=255) aTAGCTAAATGAAAAAATCCTAGGTATTCATGAGTACCTAGGATTTTTACGCATGAAAAATACAAAAAAAGAGAGGATAGTCCTCTCAAAc > 1:783193/1‑91 (MQ=255) tAGCTAAATGAAAAAATCCTAGGTATTCATGAGTACCTAGGATTTTTACGCATGATAAATACAAAAAAAGAGAGGATAGTCCTCTCAAACa > 1:1366649/1‑91 (MQ=255) aGCTAAATGAAAAAATCCTAGGTATTCATGAGTACCTAGGATTTTTACGCATGATAAATACAAAAAAAGAGAGGATAGTCCTCTCAAACaa < 1:2833262/91‑1 (MQ=255) gCTAAATGAAAAAATCCTAGGTATTCATGAGTACCTAGGATTTTTACGCATGATAAATACAAAAAAAGAGAGGATAGTCCTCTCAAACAAt > 1:3171049/1‑91 (MQ=255) tAAATGAAAAAATCCTAGGTATTCATGAGTACCTAGGATTTTTACGCATGATAAATACAAAAAAAGAGAGGATAGTCCTCTCAAACAATAg < 1:1125046/91‑1 (MQ=255) aaTGAAAAAATCCTAGGTATTCATGAGTACCTAGGATTTTTACGCATGATAAATACAAAAAAAGAGAGGATAGTCCTCTCAAACAATAGtt > 1:3726116/1‑91 (MQ=255) aTGAAAAAATCCTAGGTATTCATGAGTACCTAGGATTTTTACGCATGATAAATACAAAAAAAGAGAGGATAGTCCTCTCAAACAATAGTta > 1:2189685/1‑91 (MQ=255) aTGAAAAAATCCTAGGTATTCATGAGTACCTAGGATTTTTACGCATGATAAATACAAAAAAAGAGAGGATAGTCCTCTCAAACAATAGTta < 1:1898093/91‑1 (MQ=255) aTGAAAAAATCCTAGGTATTCATGAGTACCTAGGATTTTTACGCATGATAAATACAAAAAAAGAGAGGATAGTCCTCTCAAACAATAGTta > 1:1396081/1‑91 (MQ=255) gAAAAAATCCTAGGTATTCATGAGTACATAGGATTTTTACGCATGATAAATACAAAAAAAGAGAGGATAGTCCTCTCAAACAATAGTtaat < 1:2951803/91‑1 (MQ=255) aaagTCCTACGTATTCATGAGTACCTAGGATTTTTACGCATGATAAATACAAAAAAAGAGAGGATAGTCCTCTCAAACAATAGTTAATaaa < 1:3731737/91‑1 (MQ=255) aaaaTCCTAGGTATTCATGAGTACCTAGGATTTTTACGCATGATAAATACAAAAAAAGAGAGGATAGTCCTCTCAAACAATAGTTAATaaa > 1:1120071/1‑91 (MQ=255) aaaaTCCTAGGTATTCATGAGTACCTAGGATTTTTACGCATGATAAATACAAAAAAAGAGAGGATAGTCCTCTCAAACAATAGTTAATaaa > 1:4019748/1‑91 (MQ=255) aaaaTCCTAGGTATTCATGAGTACCTAGGATTTTTACGCATGATAAATACAAAAAAAGAGAGGATAGTCCTCTCAAACAATAGTTAATaaa > 1:1825703/1‑91 (MQ=255) aaTCCTAGGTATTCATGAGTACCTAGGATTTTTACGCATGATAAATACAAAAAAAGAGAGGCTAGTCCTCTCAAACAATAGTTAATAAAAt > 1:1862586/1‑91 (MQ=255) aTCCTAGGTATTCATGAGTACCTAGGATTTTTACGCATGATAAATACAAAAAAAGAGAGGATAGTCCTCTCAAACAATAGTTAATAAAAtt < 1:1378226/91‑1 (MQ=255) aTCCTAGGTATTCATGAGTACCTAGGATTTTTACGCATGATAAATACAAAAAAAGAGAGGATAGTCCTCTCAAACAATAGTTAATAAAAtt < 1:2228764/91‑1 (MQ=255) ccTAGGTATTCATGAGTACCTAGGATTTTTACGCATGATAAATACAAAAAAAGAGAGGATAGTCCTCTCAAACAATAGTTAATAAAATTGt > 1:645686/1‑91 (MQ=255) ccTAGGAATTCATGAGTACCTAGGATTTTTACGCATGATAAATACAAAAAAAGAGAGGATAGTCCTCTCAAACAATAGTTAATAAAATTGt < 1:1004669/91‑1 (MQ=255) cTAGGTATTCATGAGTACCTAGGATTTTTACGCATGTTAAATACAAAAAAAGAGAGGATAGTCCTCTCAAACAATAGTTAATAAAATTGTa > 1:444737/1‑91 (MQ=255) cTAGGTACTCATGAATACCTAGGATTTTTACGCATGATAAATACAAAAAAAGAGAGGATAGTCCTCTCAAACAATAGTTAATAAAATTGTa > 1:2556188/1‑91 (MQ=255) cTAGGTACTCATGAATACCTAGGATTTTTACGCATGATAAATACAAAAAAAGAGAGGATAGTCCTCTCAAACAATAGTTAATAAAATTGTa > 1:1472020/1‑91 (MQ=255) cTAGGTACTCATGAATACCTAGGATTTTTACGCATGATAAATACAAAAAAAGAGAGGATAGTCCTCTCAAACAATAGTTAATAAAATTGTa > 1:1472019/1‑91 (MQ=255) cTAGGTACTCATGAATACCTAGGATTTTTACGCATGATAAATACAAAAAAAGAGAGGATAGTCCTCTCAAACAATAGTTAATAAAATTGTa > 1:1301323/1‑91 (MQ=255) aGGTATTGATGAGTACCTAGGATTTTTACGCATGATAAATACAAAAAAAGAGAGGATAGTCCTCTCAAACAATAGTTAATAAAATTGTAGc < 1:2073376/91‑1 (MQ=255) aGGTATTCATGAGTACCTAGGATTTTTACGCTTGATAAATACAAGAAAAGAGAGGATCGTCCTCTCAAACAATAGTTAATAAAATTGTAGc < 1:3313083/91‑1 (MQ=255) aGGTATTCATGAGTACCTAGGATTTTTACGCATGATAAATACAAAAAAAGAGAGGATAGTCCTCTCAAACAATAGTTAATAAAATTGTAGc < 1:726079/91‑1 (MQ=255) aGGTATTCATGAGTACCTAGGATTTTTACGCATGATAAATACAAAAAAAGAGAGGATAGTCCTCTCAAACAATAGTTAATAAAATTGTAGc < 1:1211810/91‑1 (MQ=255) ggTATTCATGAGTACCTAGGATTTTTACGCATGATAAATACAAAAAAAGAGAGGATAGTCCTCTCAAACAATAGTTAATAAAATTGTAGcc > 1:2033092/1‑91 (MQ=255) ggTACTCATGAATACCTAGGATTTTTACGCATGATAAATACAAAAAAAGAGAGGATAGTCCTCTCAAACAATAGTTAATAAAATTGTAGcc > 1:3429931/1‑91 (MQ=255) gTATTCATGAGTACCTAGGATTTTTACGCATGATAAATACAAAAAAAGAGAGGATAGTCCTCTCAAACAATAGTTAATAAAATTGTAGCCa < 1:3252499/91‑1 (MQ=255) gTATTCATGAGTACCTAGGATTTTTACGCATGATAAATACAAAAAAAGAGAGGATAGTCCTCTCAAACAATAGTTAATAAAATTGTAGCCa < 1:1627255/91‑1 (MQ=255) gTATTCATGAGTACCTAGGATTTTTACGCATGATAAATACAAAAAAAGAGAGGATAGTCCTCTCAAACAATAGTTAATAAAATTGTAGCCa < 1:3431891/91‑1 (MQ=255) gTATTCATGAGTACCTAGGATTTTTACGCATGATAAATACAAAAAAAGAGAGGATAGTCCTCTCAAACAATAGTTAATAAAATTGTAGCCa < 1:373430/91‑1 (MQ=255) gTATTCATGAGTACCTAAGATTTTTACGCATGATAAATACAAAAAAAGAGAGGATAGTCCTCTCAAACAATAGTTAATAAAATTGTAGCCa < 1:3551866/91‑1 (MQ=255) gTACTCATGAATACCTAGGATTTTTACGCATGATAAATACAAAAAAAGAGAGGATAGTCCTCTCAAACAATAGTTAATAAAATTGTAGCCa > 1:360280/1‑91 (MQ=255) tactCATGAATACCTAGGATTTTTACGCATGATAAATACAAAAAAAGAGAGGATAGTCCTCTCAAACAATAGTTAATAAAATTGTAGCCAt > 1:1112964/4‑91 (MQ=255) tactCATGAATACCTAGGATTTTTACGCATGATAAATACAAAAAAAGAGAGGATAGTCCTCTCAAACAATAGTTAATAAAATTGTAGCCAt > 1:2823732/4‑91 (MQ=255) tactCATGAATACCTAGGATTTTTACGCATGATAAATACAAAAAAAGAGAGGATAGTCCTCTCAAACAATAGTTAATAAAATTGTAGCCAt > 1:1112748/4‑91 (MQ=255) actCATGAATACCTAGGATTTTTACGCATGATCAATACAAAAAAAGAGAGGATAGTCCTCTCAAACAATAGTTAATAAAATTGTAGCCAtt > 1:3102928/3‑91 (MQ=255) ctCATGAATACCTAGGATTTTTACGCATGATAAATACAAAAAAAGAGAGGATAGTCCTCTCAAACAATAGTTAATAAAATTGTAGCCAttt > 1:872796/2‑91 (MQ=255) aTGAATACCTAGGATTTTTACGCATGATAAATACAAAAAAAGAGAGGATAGTCCTCTCAAACAATAGTTAATAAAATTGTAGCCATttctt > 1:2171655/1‑91 (MQ=255) tGAGTACCTAGGATTTTTACGCATGATAAATACAAAAAAAGAGAGGATAGTCCTCTCAAACAATAGTTAATAAAATTGTAGCCATttcttc < 1:2323589/91‑1 (MQ=255) gTACCTAGGATTTTTACGCATGATAAATACAAAAAAAGAGAGGATAGTCCTCTCAAACAATAGTTAATAAAATTGTAGCCATTTCTTCCAg < 1:3575843/91‑1 (MQ=255) | CATTATAGAAAAATATTCAACGGAATCAATATTAGAAAAATGGTTAAATCTTTTCAATAGCTAAATGAAAAAATCCTAGGTATTCATGAGTACCTAGGATTTTTACGCATGATAAATACAAAAAAAGAGAGGATAGTCCTCTCAAACAATAGTTAATAAAATTGTAGCCATTTCTTCCAG > USA300TCH1516_ALE/1042707‑1042886 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |