| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | USA300TCH1516_ALE | 1,200,692 | G→T | 7.6% | L169F (TTG→TTT) | divIVA → | Septum site‑determining protein DivIVA |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | USA300TCH1516_ALE | 1,200,692 | 0 | G | T | 7.6% | 448.6 / 22.7 | 131 | L169F (TTG→TTT) | divIVA | Septum site‑determining protein DivIVA |
| Reads supporting (aligned to +/- strand): ref base G (51/70); new base T (5/5); total (56/75) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 7.44e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.22e-01 | |||||||||||
Only 100 of 133 total aligned reads displayed.
ATTAGACTTATTAAAAAACGAAGATTGGGATTACTTGTTGAATTATGATTTAGACGCTGAACAAGTGACGCTTGAAAATATTCATCATTTGCATGAAAATGATTTAAAGCCAGATGAAGTTGCAGCAAATGCACAAAATAATGCATCAAATACACCAGACAATAATCAACAATCCAATGAT > USA300TCH1516_ALE/1200602‑1200782 | aTTAGACTTATTAAAAAACGAAGATTGGGATTACTTGTTGAATTATGATTTAGACGCTGAACAAGTGACGCTTGAAAATATTCATCATTTg < 1:4019465/91‑1 (MQ=255) ttAGACTTATTAAAAAACGAAGATTGGGATTACTTGTTGAATTATGATTTAGACGCTGAACAAGTGACGCTTGAAAATATTCATCATTTGc > 1:4084579/1‑91 (MQ=255) aGACTTATTAAAAAACGAAGATTGGGATTACTTGTTGAATTATGATTTAGACGCTGAACAAGTGACGCTTGAAAATATTCATCATTTGCAt > 1:3954716/1‑91 (MQ=255) gACTTATTAAAAAACGAAGATTGGGATTACTTGTTGAATTATGATTTAGACGCTGAACAAGTGACGCTTGAAAATATTCATCATTTGCATg > 1:1051812/1‑91 (MQ=255) gACTTATTAAAAAACGAAGATTGGGATTACTTGTTGAATTATGATTTAGACGCTGAACAAGTGACGCTTGAAAATATTCATCATTTGCATg < 1:1617716/91‑1 (MQ=255) aCTTATTAAAAAACGAAGATTGGGATTACTTGTTGAATTATGATTTAGACGCTGAACAAGTGACGCTTGAAAATATTCATCATTTGCATGa < 1:1301893/91‑1 (MQ=255) aCTTATTAAAAAACGAAGATTGGGATTACTTGTTGAATTATGATTTAGACGCTGAACAAGTGACGCTTGAAAATATTCATCATTTGCATGa > 1:522872/1‑91 (MQ=255) cTTATTAAAAAACGAAGATTGGGATTACTTGTTGAATTATGATTTAGACGCTGAACAAGTGACGCTTGAAAATATTCATCATTTTCATgca < 1:1172255/91‑3 (MQ=255) cTTATTAAAAAACGAAGATTGGGATTACTTGTTGAATTATGATTTAGACGCTGAACAAGTGACGCTTGAAAATATTCATCATTTGCATGaa > 1:4002025/1‑91 (MQ=255) ttattaAAAAACGAAGATTGGGATTACTTGTTGAATTATGATTTAGACGCTGAACAAGTGACGCTTGAAAATATTCATCATTTGCATGaaa > 1:1591643/1‑91 (MQ=255) tattaAAAAACGAAGATTGGGATTACTTGTTGAATTATGATTTAGACGCTGAACAAGTGACGCTTGAAAATATTCATCATTTGCATGaaaa < 1:3468835/91‑1 (MQ=255) attaAAAAACGAAGATTGGGATTACTTGTTGAATTATGATTTAGACGCTGAACAAGTGACGCTTGAAAATATTCATCATTTTCATGCAAAt < 1:713491/91‑1 (MQ=255) ttaAAAAACGAAGATTGGGATTACTTGTTGAATTATGATTTAGACGCTGAACAAGTGACGCTTGAAAATATTCATCATTTGCATGAAAATg > 1:605879/1‑91 (MQ=255) aaaaaCGAAGATTGGGATTACTTGTTGAATTATGATTTAGACGCTGAACAAGTGACGCTTGAAAATATTCATCATTTTCATGCAAATGAtg < 1:1445842/91‑2 (MQ=255) aaaaaCGAAGATTGGGATTACTTGTTGAATTATGATTTAGACGCTGAACAAGTGACGCTTGAAAATATTCATCATTTTCATGCAAATGAtg < 1:1747684/91‑2 (MQ=255) aaaaaCGAAGATTGGGATTACTTGTTGAATTATGATTTAGACGCTGAACAAGTGACGCTTGAAAATATTCATCATTTGCATGAAAATGAtt < 1:921170/91‑1 (MQ=255) aaaaaCGAAGATTGGGATTACTTGTTGAATTATGATTTAGACGCTGAACAAGTGACGCTTGAAAATATTCATCATTTGCATGAAAATGAtt < 1:634599/91‑1 (MQ=255) aaaaCGAAGATTGGGATTACTTGTTGAATTATGATTTAGACGCTGAACAAGTGACGCTTGAAAATATTCATCATTTGCATGAAAATGAttt < 1:3584340/91‑1 (MQ=255) aaaaCGAAGATTGGGATTACTTGTTGAATTATGATTTAGACGCTGAACAAGTGACGCTTGAAAATATTCATCATTTGCATGAAAATGAttt < 1:2743220/91‑1 (MQ=255) aaaaCGAAGATTGGGATTACTTGTTGAATTATGATTTAGACGCTGAACAAGTGACGCTTGAAAATATTCATCATTTGCATGAAAATGAttt > 1:2417941/1‑91 (MQ=255) cGAAGATTGGGATTACTTGTTGAATTATGATTTAGACGCTGAACAAGTGACGCTTGAAAATATTCATCATTTGCATGAAAATGATTTAAAg < 1:4043683/91‑1 (MQ=255) cGAAGATTGGGATTACTTGTTGAATTATGATTTAGACGCTGAACAAGTGACGCTTGAAAATATTCATCATTTGCATGAAAATGATTTAAAg < 1:2520897/91‑1 (MQ=255) gAAGATTGGGATTACTTGTTGAATTATGATTTAGACGCTGAACAAGTGACGCTTGAAAATATTCATCATTTGCATGAAAATGATTTAAAGc > 1:156278/1‑91 (MQ=255) gAAGATTGGGATTACTTGTTGAATTATGATTTAGACGCTGAACAAGTGACGCTTGAAAATATTCATCATTTGCATGAAAATGATTTAAAGc < 1:134295/91‑1 (MQ=255) gATTGGGATTACTTGTTGAATTATGATTTAGACGCTGAACAAGTGACGCTTGAAAATATTCATCATTTGCATGAAAATGATTTAAAGCAAg > 1:1016248/1‑91 (MQ=255) aTTGGGATTACTTGTTGAATTATGATTTAGACGCTGAACAAGTGACGCTTGAAAATATTCATCATTTGCATGAAAATGATTTAAAGCCAGa < 1:649276/91‑1 (MQ=255) ttGGGATTACTTGTTGAATTATGATTTAGACGCTGAACAAGTGACGCTTGAAAATATTCATCATTTGCATGAAAATGATTTAAAGCCAGAt < 1:4061505/91‑1 (MQ=255) gATTACTTGTTGAATTATGATTTAGACGCTGAACAAGTGACGCTTGAAAATATTCATCATTTGCATGAAAATGATTTAAAGCCAGATGAAg > 1:2593397/1‑91 (MQ=255) aTTACTTGTTGAATTATGATTTAGACGCTGAACAAGTGACGCTTGAAAATATTCATCATTTGCATGAAAATGATTTAAAGCCAGATGAAGt < 1:2039056/91‑1 (MQ=255) aTTACTTGTTGAATTATGATTTAGACGCTGAACAAGTGACGCTTGAAAATATTCATCATTTGCATGAAAATGATTTAAAGCCAGATGAAGt < 1:1432453/91‑1 (MQ=255) aTTACTTGTTGAATTATGATTTAGACGCTGAACAAGTGACGCTTCAAAATATTCATCATTTGCATGAAAATGATTTAAAGCCAGATGAAGt < 1:3307534/91‑1 (MQ=255) tACTTGTTGAATTATGATTTAGACGCTGAACAAGTGACGCTTGAAAATATTCATCATTTGCATGAAAATGATTTAAAGCCAGATGAAGTTg < 1:2333484/91‑1 (MQ=255) tACTTGTTGAATTATGATTTAGACGCTGAACAAGTGACGCTTGAAAATATTCATCATTTGCATGAAAATGATTTAAAGCCAGATGAAGTTg < 1:2333501/91‑1 (MQ=255) aCTTGTTGAATTATGATTTAGACGCTGAACAAGTGACGCTTGAAAATATTCATCATTTGCATGAAAATGATTTAAAGCCAGATGAAGTTgc < 1:3828276/91‑1 (MQ=255) gttgAATTATGATTTAGACGCTGAACAAGTGACGCTTGAAAATATTCATCATTTGCATGAAAATGATTTAAAGCCAGATGAAGTTgcagca > 1:2923127/1‑91 (MQ=255) tgAATTATGATTTAGACGCTGAACAAGTGACGCTTGAAAATATTCATCATTTGCATGAAAATGATTTAAAGCCAGATGAAGTTGCAGCaaa > 1:3207685/1‑91 (MQ=255) ttATGATTTAGACGCTGAACAAGTGACGCTTGAAAATATTCATCATTTGCATGAAAATGATTTAAAGCCAGATGAAGTTGCAGCAAATGca < 1:2140140/91‑1 (MQ=255) tATGATTTAGACGCTGAACAAGTGACGCTTGAAAATATTCATCATTTGCATGAAAATGATTTAAAGCCAGATGAAGTTGCAGCAAATGcac > 1:2211204/1‑91 (MQ=255) tATGATTTAGACGCTGAACAAGTGACGCTTGAAAATATTCATCATTTGCATGAAAATGATTTAAAGCCAGATGAAGTTGCAGCAAATGcac > 1:2601946/1‑91 (MQ=255) tATGATTTAGACGCTGAACAAGTGACGCTTGAAAATATTCATCATTTGCATGAAAATGATTTAAAGCCAGATGAAGTTGCAGCAAATGcac < 1:1695884/91‑1 (MQ=255) tATGATTTAGACGCTGAACAAGTGACGCTTGAAAATATTCATCATTTGCATGAAAATGATTTAAAGCCAGATGAAGTTGCAGCAAATGcac < 1:2255840/91‑1 (MQ=255) tATGATTTAGACGCTGAACAAGTGACGCTTGAAAATATTCATCATTTGCATGAAAATGATTTAAAGCCAGATGAAGTTGCAGCAAATGcac > 1:712563/1‑91 (MQ=255) gATTTAGACGCTGAACAAGTGACGCTTGAAAATATTCATCATTTGCATGAAAATGATTTAAAGCCAGATGAAGTTGCAGCAAATGCACaaa > 1:2720583/1‑91 (MQ=255) gATTTAGACGCTGAACAAGTGACGCTTGAAAATATTCATCATTTGCATGAAAATGATTTAAAGCCAGATGAAGTTGCAGCAAATGCACaaa > 1:1691196/1‑91 (MQ=255) aTTTAGACGCTGAACAAGTGACGCTTGAAAATATTCATCATTTGCATGAAAATGATTTAAAGCCAGATGAAGTTGCAGCAAATGCACaaaa < 1:3446448/91‑1 (MQ=255) tttAGACGCTGAACAAGTGACGCTTGAAAATATTCATCATTTGCATGAAAATGATTTAAAGCCAGATGAAGTTGCAGCAAATGCACAAaat < 1:3713228/91‑1 (MQ=255) gACGCTGAACAAGTGACGCTTGAAAATATTCATCATTTGCATGAAAATGATTTAAAGCCAGATGAAGTTGCAGCAAATGCACAAAATAATg > 1:3825351/1‑91 (MQ=255) gACGCTGAACAAGTGACGCTTGAAAATATTCATCATTTGCATGAAAATGATTTAAAGCCAGATGAAGTTGCAGCAAATGCACAAAATAATg > 1:2161254/1‑91 (MQ=255) aCGCTGAACAAGTGACGCTTGAAAATATTCATCATTTGCATGAAAATGATTTAAAGCCAGATGAAGTTGCAGCAAATGCACAAAATAATGc < 1:1059581/91‑1 (MQ=255) gCTGAACAAGTGACGCTTGAAAATATTCATCATTTGCATGAAAATGATTTAAAGCCAGATGAAGTTGCAGCAAATGCAGAAAATAATGCAt < 1:3205402/91‑1 (MQ=255) gCTGAACAAGTGACGCTTGAAAATATTCATCATTTGCATGAAAATGATTGAAAGCCAGATGAAGTTGCAGCAAATGCACAAAATAATGCAt < 1:3593156/91‑1 (MQ=255) cTGAACAAGTGACGCTTGAAAATATTCATCATTTGCATGAAAATGATTTAAAGCCAGATGAAGTTGCAGCAAATGCACAAAATAATGCATc < 1:1337008/91‑1 (MQ=255) cTGAACAAGTGACGCTTGAAAATATTCATCATTTGCATGAAAATGATTTAAAGCCAGATGAAGTTGCAGCAAATGCACAAAATAATGCATc > 1:91605/1‑91 (MQ=255) tGAACAAGTGACGCTTGAAAATATTCATCATTTGCATGAAAATGATTTAAAGCCAGATGAAGTTGCAGCAAATGCACAAAATAATGCATCa < 1:1656790/91‑1 (MQ=255) tGAACAAGTGACGCTTGAAAATATTCATCATTTGCATGAAAATGATTTAAAGCCAGATGAAGTTGCAGCAAATGCACAAAATAATGCATCa < 1:3480455/91‑1 (MQ=255) tGAACAAGTGACGCTTGAAAATATTCATCATTTGCATGAAAATGATTTAAAGCCAGATGAAGTTGCAGCAAATGCACAAAATAATGCATCa < 1:2811816/91‑1 (MQ=255) tGAACAAGTGACGCTTGAAAATATTCATCATTTGCATGAAAATGATTTAAAGCCAGATGAAGTTGCAGCAAATGCACAAAATAATGCATCa < 1:1494611/91‑1 (MQ=255) gAACAAGTGACGCTTGAAAATATTCATCATTTGCATGAAAATGATTTAAAGCCAGATGAAGTTGCAGCAAATGCACAAAATAATGCATCaa > 1:3738195/1‑91 (MQ=255) aaCAAGTGACGCTTGAAAATATTCATCATTTGCATGAAAATGATTTAAAGCCAGATGAAGTTGCAGCAAATGCACAAAATAATGCATCaaa < 1:3953659/91‑1 (MQ=255) aaGTGACGCTTGAAAATATTCATCATTTGCATGAAAATGATTTAAAGCCAGATGAAGTTGCAGCAAATGCACAAAATAATGCATCAAATac > 1:3918497/1‑91 (MQ=255) aaGTGACGCTTGAAAATATTCATCATTTGCATGAAAATGATTTAAAGCCAGATGAAGTTGCAGCAAATGCACAAAATAATGCATCAAATac > 1:2422805/1‑91 (MQ=255) gTGACGCTTGAAAATATTCATCATTTGCATGAAAATGATTTAAAGCCAGATGAAGTTGCAGCAAATGCACAAAATAATGCATCAAATacac > 1:3456468/1‑91 (MQ=255) gACGCTTGAAAATATTCATCATTTGCATGAAAATGATTTAAAGCCAGATGAAGTTGCAGCAAATGCACAAAATAATGCATCAAATACACCa < 1:3920732/91‑1 (MQ=255) gACGCTTGAAAATATTCATCATTTGCATGAAAATGATTTAAAGCCAGATGAAGTTGCAGCAAATGCACAAAATAATGCATCAAATACACCa > 1:2438562/1‑91 (MQ=255) aCGCTTGAAAATATTCATCATTTGCATGAAAATGATTTAAAGCCAGATGAAGTTGCAGCAAATGCACAAAATAATGCATCAAATACACCAg > 1:2097278/1‑91 (MQ=255) cGCTTGAAAATATTCATCATTTGCATGAAAATGATTTAAAGCCAGATGAAGTTGCAGCAAATGCACAAAATAATGCATCAAATACACCAGa > 1:1577791/1‑91 (MQ=255) cGCTTGAAAATATTCATCATTTGCATGAAAATGATTTAAAGCCAGATGAAGTTGCAGCAAATGCACAAAATAATGCATCAAATACACCAGa < 1:1750425/91‑1 (MQ=255) cGCTTGAAAATATTCATCATTTGCATGAAAATGATTTAAAGCCAGATGAAGTTGCAGCAAATGCACAAAATAATGCATCAAATACACCAGa > 1:2849731/1‑91 (MQ=255) gCTTGAAAATATTCATCATTTGCATGAAAATGAGTTAAAGCCAGATGAAGTTGCAGCAAATGCACAAAATAATGCATCAAATACACCAGAc < 1:3357969/91‑1 (MQ=255) tGAAAATATTCATCATTTGCATGAAAATGATTTAAAGCCAGATGAAGTTGCAGCAAATGCACAAAATAATGCATCAAATACACCAGACaat > 1:1280447/1‑91 (MQ=255) gAAAATATTCATCATTTGCATGAAAATGATTTAAAGCCAGATGAAGTTGCAGCAAATGCACAAAATAATGCATCAAATACACCAGACaata > 1:898905/1‑91 (MQ=255) gAAAATATTCATCATTTGCATGAAAATGATTTAAAGCCAGATGAAGTTGCAGCAAATGCACAAAATAATGCATCAAATACACCAGACaata < 1:1813610/91‑1 (MQ=255) gAAAATATTCATCATTTGCATGAAAATGATTTAAAGCCAGATGAAGTTGCAGCAAATGCACAAAATAATGCATCAAATACACCAGACaata < 1:1813326/91‑1 (MQ=255) aaaaTATTCATCATTTGCATGAAAATGATTTAAAGCCAGATGAAGTTGCAGCAAATGCACAAAATAATGCATCAAATACACCAGACaataa > 1:3514181/1‑91 (MQ=255) aaaaTATTCATCATTTGCATGAAAATGATTTAAAGCCAGATGAAGTTGCAGCAAATGCACAAAATAATGCATCAAATACACCAGACaataa < 1:1773055/91‑1 (MQ=255) aaaaTATTCATCATTTGCATGAAAATGATTTAAAGCCAGATGAAGTTGCAGCAAATGCACAAAATAATGCATCAAATACACCAGACaataa < 1:1081390/91‑1 (MQ=255) aaTATTCATCATTTGCATGAAAATGATTTAAAGCCAGATGAAGTTGCAGCAAATGCACAAAATAATGCATCAAATACACCAGACAATAATc < 1:1709004/91‑1 (MQ=255) aaTATTCATCATTTGCATGAAAATGATTTAAAGCCAGATGAAGTTGCAGCAAATGCACAAAATAATGCATCAAATACACCAGACAATAATc > 1:49719/1‑91 (MQ=255) aaTATTCATCATTTGCATGAAAATGATTTAAAGCCAGATGAAGTTGCAGCAAATGCACAAAATAATGCATCAAATACACCAGACAATAATc > 1:3042998/1‑91 (MQ=255) atatTCATCATTTGCATGAAAATGATTTAAAGCCAGATGAAGTTGCAGCAAATGCACAAAATAATGCATCAAATACACCAGACAATAATca < 1:1529627/91‑1 (MQ=255) atatTCATCATTTGCATGAAAATGATTTAAAGCCAGATGAAGTTGCAGCAAATGCACAAAATAATGCATCAAATACACCAGACAATAATca < 1:3654185/91‑1 (MQ=255) atatTCATCATTTGCATGAAAATGATTTAAAGCCAGATGAAGTTGCAGCAAATGCACAAAATAATGCATCAAATACACCAGACAATAATca < 1:3241369/91‑1 (MQ=255) tatTCATCATTTGCATGAAAATGATTTAAAGCCAGATGAAGTTGCAGCAAATGCACAAAATAATGCATCAAATACACCAGACAATAATcaa < 1:2635767/91‑1 (MQ=255) ttCATCATTTGCATGAAAATGATTTAAAGCCAGATGAAGTTGCAGCAAATGCACAAAATAATGCATCAAATACTCCAGACAATAATcaaca > 1:1153911/1‑91 (MQ=255) ttCATCATTTGCATGAAAATGATTTAAAGCCAGATGAAGTTCCAGCAAATGCACAAAATAATGCATCAAATACACCAGACAATAATcaaca > 1:3597711/1‑91 (MQ=255) tcatcaTTTGCATGAAAATGATTTAAAGCCAGATGAAGTTGCAGCAAATGCACAAAATAATGCATCAAATACACCAGACAATAATcaacaa > 1:1614778/1‑91 (MQ=255) catcatTTGCATGAAAATGATTTAAAGCCAGATGAAGTTGCAGCAAATGCACAAAATAATGCATCAAATACACCAGACAATAATCAACAAt > 1:421427/1‑91 (MQ=255) catcatTTGCATGAAAATGATTTAAAGCCAGATGAAGTTGCAGCAAATGCACAAAATAATGCATCAAATACACCAGACAATAATCAACAAt < 1:863503/91‑1 (MQ=255) catcatTTGCATGAAAATGATTTAAAGCCAGATGAAGTTGCAGCAAATGCACAAAATAATGCATCAAATACACCAGACAATAATCAACAAt > 1:695517/1‑91 (MQ=255) catcatTTGCATGAAAATGATTTAAAGCCAGATGAAGTTGCAGCAAATGCACAAAATAATGCATCAAATACACCAGACAATAATCAACAAt < 1:551114/91‑1 (MQ=255) atcatTTGCATGAAAATGATTTAAAGCCAGATGAAGTTGCAGCAAATGCACAAAATAATGCATCAAATACACCAGACAATAATCAACAATc > 1:1858270/1‑91 (MQ=255) tcatTTTCATGCAAATGATTTAAAGCCAGATGAAGTTGCAGCAAATGCACAAAATAATGCATCAAATACACCAGACAATAATCAACAATcc > 1:3098322/1‑91 (MQ=255) tcatTTGCATGAAAATGATTTAAAGCCAGATGAAGTTGCAGCAAATGCACAAAATAATGCATCAAATACACCAGACAATAATCAACAATcc > 1:1304421/1‑91 (MQ=255) tcatTTGCATGAAAATGATTTAAAGCCAGATGAAGTTGCAGCAAATGCACAAAATAATGCATCAAATACACCAGACAATAATCAACAATcc > 1:76122/1‑91 (MQ=255) tcatTTGCATGAAAATGATTTAAAGCCAGATGAAGTTGCAGCAAATGCACAAAATAATGCATCAAATACACCAGACAATAATCAACAATcc < 1:2895149/91‑1 (MQ=255) catTTTCATGCAAATGATTTAAAGCCAGATGAAGTTGCAGCAAATGCACAAAATAATGCATCAAATACACCAGACAATAATCAACAATCCa > 1:1205453/1‑91 (MQ=255) catTTTCATGCAAATGATTTAAAGCCAGATGAAGTTGCAGCAAATGCACAAAATAATGCATCAAATACACCAGACAATAATCAACAATCCa > 1:1985501/1‑91 (MQ=255) atTTGCATGAAAATGATTTAAAGCCAGATGAAGTTGCAGCAAATGCACAAAATAATGCATCAAATACACCAGACAATAATCAACAATCCaa < 1:772278/91‑1 (MQ=255) ttGTATGAATATGATTTAAAGCCAGATGAAGTTGCAGCAAATGCACAAAATAATGCATCAAATACACCAGACAATAATCAACAATCCAATg < 1:3726861/91‑1 (MQ=255) gCACGAAAATGATTTAAAGCCAGATGAAGTTGCAGCAAATGCACAAAATAATGCATCAAATACACCAGACAATAATCAACAATCCAATGAt < 1:3344508/91‑1 (MQ=255) | ATTAGACTTATTAAAAAACGAAGATTGGGATTACTTGTTGAATTATGATTTAGACGCTGAACAAGTGACGCTTGAAAATATTCATCATTTGCATGAAAATGATTTAAAGCCAGATGAAGTTGCAGCAAATGCACAAAATAATGCATCAAATACACCAGACAATAATCAACAATCCAATGAT > USA300TCH1516_ALE/1200602‑1200782 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |