| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | USA300TCH1516_ALE | 1,622,775 | A→T | 9.5% | K43* (AAA→TAA) | marA → | Multiple antibiotic resistance protein MarA |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | USA300TCH1516_ALE | 1,622,775 | 0 | A | T | 9.5% | 498.5 / 35.1 | 147 | K43* (AAA→TAA) | marA | Multiple antibiotic resistance protein MarA |
| Reads supporting (aligned to +/- strand): ref base A (63/70); new base T (9/5); total (72/75) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 2.70e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.12e-01 | |||||||||||
Only 100 of 155 total aligned reads displayed.
TATTGAAGATCGTTTATTAGAGCCTTTCAATTTGCAAGAATTAAGTGATTACGTTGGTCTTTCGCCATACCATCTTGATCAATCATTTAAAATGATTGTCGGCTTATCTCCAGAAGCTTATGCACGCGCGCGTAAAATGACACTCGCTGCAAATGATGTGATTAATGGTGCTACAC > USA300TCH1516_ALE/1622687‑1622862 | tatTGAAGATCGTTTATTAGAGCCTTTCAATTTGCAAGAATTAAGTGATTACGTTGGTCTTTCGCCATACCATCTTGATCAATCATTTaaa < 1:1929312/91‑1 (MQ=255)tatTGAAGATCGTTTATTAGAGCCTTTCAATTTGCAAGAATTAAGTGATTACGTTGGTCTTTCGCCATACCATCTTGATCAATCATTTaaa < 1:4117887/91‑1 (MQ=255) atTGAAGATCGTTTATTAGAGCCTTTCAATTTGCAAGAATTAAGTGATTACGTTGGTCTTTCGCCATACCATCTTGATCAATCATTTtaaa < 1:2408028/91‑1 (MQ=255) ttGAAGATCGTTTATTAGAGCCTTTCAATTTGCAAGAATTAAGTGATTACGTTGGTCTTTCGCCATACCATCTTGATCAATCATTTTAAAt < 1:4026878/91‑1 (MQ=255) ttGAAGATCGTTTATTAGAGCCTTTCAATTTGCAAGAATTAAGTGATTACGTTGGTCTTTCGCCATACCATCTTGATCAATCATTTTAAAt < 1:793018/91‑1 (MQ=255) tGAAGATCGTTTATTAGAGCCTTTCAATTTGCAAGAATTAAGTGATTACGTTGGTCTTTCGCCATACCATCTTGATCAATCATTCAAAATg < 1:3226317/91‑1 (MQ=255) aGATCGTTTATTAGAGCCTTTCAATTTGCAAGAATTAAGTGATTACGTTGGTCTTTCGCCATACCATCTTGATCAATCATTTTAAATGAtt < 1:13070/91‑1 (MQ=255) aGATCGTTTATTAGAGCCTTTCAATTTGCAAGAATTAAGTGATTACGTTGGTCTTTCGCCATACCATCTTGATCAATCATTTAAAATGAtt > 1:2529390/1‑91 (MQ=255) gTTTATTAGAGCCTTTCAATTTGCAAGAATTAAGTGATTACGTTGGTCTTTCGCCATACCATCTTGATCAATCATTTAAAATGATTGTCgg > 1:2059061/1‑91 (MQ=255) gTTTATTAGAGCCTTTCAATTTGCAAGAATTAAGTGATTACGTTGGTCTTTCGCCATACCATCTTGATCAATCATTTAAAATGATTGTCgg > 1:3293049/1‑91 (MQ=255) gTTTATTAGAGCCTTTCAATTTGCAAGAATTAAGTGATTACGTTGGTCTTTCGCCATACCATCTTGATCAATCATTTAAAATGATTGTCgg > 1:1519305/1‑91 (MQ=255) gTTTATTAGAGCCTTTCAATTTGCAAGAATTAAGTGATTACGTTGGTCTTTCGCCATACCATCTTGATCAATCATTTAAAATGATTGTCgg > 1:837352/1‑91 (MQ=255) tttATTAGAGCCTTTCAATTTGCAAGAATTAAGTGATCACGTTGGTCTTTCGCCATACCATCTTGATCAATCATTTAAAATGATTGTCGGc > 1:3483425/1‑91 (MQ=255) tttATTAGAGCCTTTCAATTTGCAAGAATTAAGTGATCACGTTGGTCTTTCGCCATACCATCTTGATCAATCATTTAAAATGATTGTCGGc > 1:3483411/1‑91 (MQ=255) tttATTAGAGCCTTTCAATTTGCAAGAATTAAGTGATAACGTTGGTCTTTCGCCATACCATCTTGATCAATCATTTAAAATGATTGTCGGc > 1:3483313/1‑91 (MQ=255) ttattaGAGCCTTTCAATTTGCAAGAATTAAGTGATTACGTTGGTCTTTCGCCATACCATCTTGATCAATCATTTAAAATGATTGTCGGCt < 1:451565/91‑1 (MQ=255) ttattaGAGCCTTTCAATTTGCAAGAATTAAGTGATTACGTTGGTCTTTCGCCATACCATCTTGATCAATCATTTAAAATGATTGTCGGCt > 1:1895689/1‑91 (MQ=255) ttattaGAGCCTTTCAATTTGCAAGAATTAAGTGATTACGTTGGTCTTTCGCCATACCATCTTGATCAATCATTTAAAATGATTGTCGGCt > 1:1895989/1‑91 (MQ=255) tattaGAGCCTTTCAATTTGCAAGAATTAAGTGATTACGTTGGTCTTTCGCCATACCATCTTGATCAATCATTTAAAATGATTGTCGGCtt > 1:3909419/1‑91 (MQ=255) attaGAGCCTTTCAATTTGCAAGAATTAAGTGATTACGTTGGTCGTTCGCCATCCCAGCTTGATCAATCATTTAAAATGATTGTCGGCTTa < 1:3319241/91‑1 (MQ=255) ttaGAGCCTTTCAATTTGCAAGAATTAAGTGATTACGTTGGTCTTTCGCCATACCATCTTGATCAATCATTTAAAATGATTGTCGGCTTAt > 1:489308/1‑91 (MQ=255) ttaGAGCCTTTCAATTTGCAAGAATTAAGTGATTACGTTGGTCTTTCGCCATACCATCTTGATCAATCATTTAAAATGATTGTCGGCTTAt > 1:3646932/1‑91 (MQ=255) taGAGCCTTTCAATTTGCAAGAATTAAGTGATTACGTTGGTCTTTCGCCATACCATCTTGATCAATCATTTAAAATGATTGTCGGCTTAtc > 1:2141003/1‑91 (MQ=255) taGAGCCTTTCAATTTGCAAGAATTAAGTGATTACGTTGGTCTTTCGCCATACCATCTTGATCAATCATTTAAAATGATTGTCGGCTTAtc < 1:2006406/91‑1 (MQ=255) gCCTTTCAATTTGCAAGAATTAAGTGATTACGTTGGTCTTTCGCCATACCATCTTGATCAATCATTTAAAATGATTGTCGGCTTATCTCCa > 1:970827/1‑91 (MQ=255) gCCTTTCAATTTGCAAGAATTAAGTGATTACGTTGGTCTTTCGCCATACCATCTTGATCAATCATTTAAAATGATTGTCGGCTTATCTCCa < 1:3365530/91‑1 (MQ=255) gCCTTTCAATTTGCAAGAATTAAGTGATTACGTTGGTCTTTCGCCATACCATCTTGATCAATCATTTAAAATGATTGTCGGCTTATCTCCa > 1:3359353/1‑91 (MQ=255) gCCTTTCAATTTGCAAGAATTAAGTGATTACGTTGGTCTTTCGCCATACCATCTTGATCAATCATTTAAAATGATTGTCGGCTTATCTCCa > 1:970814/1‑91 (MQ=255) cTTTCAATTTGCAAGAATTAAGTGATTACGTTGGTCTTTCGCCATACCATCTTGATCAATCATTTAAAATGATTGTCGGCTTATCTCCAGa < 1:2086199/91‑1 (MQ=255) tttCAATTTGCAAGAATTAAGTGATTACGTTGGTCTTTCGCCATACCATCTTGATCAATCATTTAAAATGATTGTCGGCTTATCTCCAGaa < 1:3945825/91‑1 (MQ=255) tttCAATTTGCAAGAATTAAGTGATTACGTTGGTCTTTCGCCATACCATCTTGATCAATCATTTAAAATGATTGTCGGCTTATCTCCAGaa > 1:567710/1‑91 (MQ=255) ttCAATTTGCAAGAATTAAGTGATTACGTTGGTCTTTCGCCATACCATCTTGATCAATCATTTAAAATGATTGTCGGCTTATCTCCAGAAg < 1:3429961/91‑1 (MQ=255) cAATTTGCAAGAATTAAGTGATTACGTTGGTCTTTCGCCATACCATCTTGATCAATCATTTAAAATGATTGTCGGCTTATCTCCAGAAGCt < 1:3700064/91‑1 (MQ=255) cAATTTGCAAGAATTAAGTGATTACGTTGGTCTTTCGCCATACCATCTTGATCAATCATTTAAAATGATTGTCGGCTTATCTCCAGAAGCt > 1:114416/1‑91 (MQ=255) aaTTTGCAAGAATTAAGTGATTACGTTGGTCTTTCGCCATACCATCTTGATCAATCATTTAAAATGATTGTCGGCTTATCTCCAGAAGCtt < 1:348246/91‑1 (MQ=255) aTTTGCAAGAATTAAGTGATTACGTTGGTCTTTCGCCATACCATCTTGATCAATCATTTAAAATGATTGTCGGCTTATCTCCAGAAGCTTa < 1:2892052/91‑1 (MQ=255) tttGCAAGAATTAAGTGATTACGTTGGTCTTTCGCCATACCATCTTGATCAATCATTTAAAATGATTGTCGGCTTATCTCCAGAAGCTTAt > 1:679526/1‑91 (MQ=255) tGCAAGAATTAAGTGATTACGTTGGTCTTTCGCCATACCATCTTGATCAATCATTTAAAATGATTGTCGGCTTATCTCCAGAAGCTTATGc > 1:3558518/1‑91 (MQ=255) gCAAGAATTAAGTGATTACGTTGGTCTTTCGCCATACCATCTTGATCAATCATTTAAAATGATTGTCGGCTTATCTCCAGAAGCTTATGCa > 1:4116917/1‑91 (MQ=255) gCAAGAATTAAGTGATTACGTTGGTCTTTCGCCATACCATCTTGATCAATCATTTAAAATGATTGTCGGCTTATCTCCAGAAGCTTATGCa < 1:904375/91‑1 (MQ=255) cAAGAATTAAGTGATTACGTTGGTCTTTCGCCATACCATCTTGATCAATCATTTAAAATGATTGTCGGCTTATCTCCAGAAGCTTATGCAc > 1:2901257/1‑91 (MQ=255) gAATTAAGTGATTACGTTGGTCTTTCGCCATACCATCTTGATCAATCATTTAAAATGATTGTCGGCTTATCTCCAGAAGCTTATGCAcgcg < 1:3032722/91‑1 (MQ=255) gAATTAAGTGATTACGTTGGTCTTTCGCCATACCATCTTGATCAATCATTTAAAATGATTGTCGGCTTATCTCCAGAAGCTTATGCAcgcg < 1:2520170/91‑1 (MQ=255) aaTTAAGTGATTACGTTGGTCTTTCGCCATACCATCTTGATCAATCATTTAAAATGATTGTCGGCTTATCTCCAGAAGCTTATGCAcgcgc > 1:685127/1‑91 (MQ=255) aaTTAAGTGATTACGTTGGTCTTTCGCCATACCATCTTGATCAATCATTTAAAATGATTGTCGGCTTATCTCCAGAAGCTTATGCAcgcgc < 1:227550/91‑1 (MQ=255) aaTTAAGTGATTACGTTGGTCTTTCGCCATACCATCTTGATCAATCATTTAAAATGATTGTCGGCTTATCTCCAGAAGCTTATGCAcgcgc > 1:2640529/1‑91 (MQ=255) tAAGTGATTACGTTGGTCTTTCGCCATACCATCTTGATCAATCATTTAAAATGATTGTCGGCTTATCTCCAGAAGCTTATGCAcgcgcgcg < 1:2872109/91‑1 (MQ=255) tAAGTGATTACGTTGGTCTTTCGCCATACCATCTTGATCAATCATTTAAAATGATTGTCGGCTTATCTCCAGAAGCTTATGCAcgcgcgcg < 1:2876672/91‑1 (MQ=255) tAAGTGATTACGTTGGTCTTTCGCCATACCATCTTGATCAATCATTTAAAATGATTGTCGGCTTATCTCCAGAAGCTTATGCAcgcgcgcg < 1:3431529/91‑1 (MQ=255) aaGTGATTACGTTGGTCTTTCGCCATACCATCTTGATCAATCATTTAAAATGATTGTCGGCTTATCTCCAGAAGCTTATGCACGTGCGCGt > 1:1605135/1‑91 (MQ=255) gTGATTACGTTGGTCTTTCGCCATACCATCTTGATCAATCATTTAAAATGATTGTCGGCTTATCTCCAGAAGCTTATGCACGCGCGCGTaa > 1:602715/1‑91 (MQ=255) tGATTACGTTGGTCTTTCGCCATACCATCTTGATCAATCATTTAAAATGATTGTCGGCTTATCTCCAGAAGCTTATGCACGCGCGCGTaaa < 1:1286594/91‑1 (MQ=255) gATTACGTTGGTCTTTCGCCATACCATCTTGATCAATCATTTAAAATGATTGTCGGCTTATCTCCAGAAGCTTATGCACGCGCGCGTaaaa < 1:2517001/91‑1 (MQ=255) gATTACGTTGGTCTTTCGCCATACCATCTTGATCAATCATTTAAAATGATTGTCGGCTTATCTCCAGAAGCTTATGCACGCGCGCGTaaaa > 1:3902385/1‑91 (MQ=255) gATTACGTTGGTCTTTCGCCATACCATCTTGATCAATCATTTAAAATGATTGTCGGCTTATCTCCAGAAGCTTATGCACGCGCGCGTaaaa > 1:2978992/1‑91 (MQ=255) aTTACGTTGGTCTTTCGCCATACCATCTTGATCAATCATTTAAAATGATTGTCGGCTTATCTCCAGAAGCTTATGCACGCGCGCGTAAAAt < 1:83268/91‑1 (MQ=255) ttACGTTGGTCTTTCGCCATACCATCTTGATCAATCATTTAAAATGATTGTCGGCTTATCTCCAGAAGCTTATGCACGCGCGCGTAAAATg < 1:969419/91‑1 (MQ=255) tACGTTGGTCTTTCGCCATACCATCTTGATCAATCATTTAAAATGATTGTCGGCTTATCTCCAGAAGCTTATGCACGCGCGCGTAAAATGa < 1:2370868/91‑1 (MQ=255) tACGTTGGTCTTTCGCCATACCATCTTGATCAATCATTTAAAATGATTGTCGGCTTATCTCCAGAAGCTTATGCACGCGCGCGTAAAATGa < 1:2674185/91‑1 (MQ=255) ctgTTGGTCTTTCGCCATACCATCTTGATCAATCATTTAAAATGATTGTCGGCTTATCTCCAGAAGCTTATGCACGCGCGCGTAAAATGac < 1:1166363/89‑1 (MQ=255) aCGTTGGTCTTTCGCCATACCATCTTGATCAATCATTTAAAATGATTGTCGGCTTATCTCCAGAAGCTTATGCACGCGCGCGTAAAATGac < 1:1263364/91‑1 (MQ=255) gTTGGTCTTTCGCCATACCATCTTGATCAATCATTTAAAATGATTGTCGGCTTATCTCCAGAAGCTTATGCACGCGCGCGTAAAATGacac < 1:1630402/91‑1 (MQ=255) tGGTCTTTCGCCATACCATCTTGATCAATCATTTAAAATGATTGTCGGCTTATCTCCAGAAGCTTATGCACGCGCGCGTAAAATGACACTc > 1:662702/1‑91 (MQ=255) tGGTCTTTCGCCATACCATCTTGATCAATCATTTAAAATGATTGTCGGCTTATCTCCAGAAGCTTATGCACGCGCGCGTAAAATGACACTc > 1:662733/1‑91 (MQ=255) tCTTTCGCCATACCATCTTGATCAATCATTTAAAATGATTGTCGGCTTATCTCCAGAAGCTTATGCACGCGCGCGTAAAATGACACTCGCt > 1:3440006/1‑91 (MQ=255) tCTTTCGCCATACCATCTTGATCAATCATTTAAAATGATTGTCGGCTTATCTCCAGAAGCTTATGCACGCGCGCGTAAAATGACACTCGCt < 1:3645278/91‑1 (MQ=255) cTTTCGCCATACCATCTTGATCAATCATTTAAAATGATTGTCGGCTTATCTCCAGAAGCTTATGCACGCGCGCGTAAAATGACACTCGCTg < 1:1014554/91‑1 (MQ=255) cTTTCGCCATACCATCTTGATCAATCATTTAAAATGATTGTCGGCTTATCTCCAGAAGCTTATGCACGCGCGCGTAAAATGACACTCGCTg < 1:3689978/91‑1 (MQ=255) ttCGCCATACCATCTTGATCAATCATTTAAAATGATTGTCGGCTTATCTCCAGAAGCTTATGCACGCGCGCGTAAAATGACACTCGCTGCa > 1:1302874/1‑91 (MQ=255) cGCCATACCATCTTGATCAATCATTTAAAATGATTGTCGGCTTATCTCCAGAAGCTTATGCACGCGCGCGTAAAATGACACTCGCTGCaaa > 1:579978/1‑91 (MQ=255) cGCCATACCATCTTGATCAATCATTTAAAATGATTGTCGGCTTATCTCCAGAAGCTTATGCACGCGCGCGTAAAATGACACTCGCTGCaaa < 1:1601061/91‑1 (MQ=255) gCCATACCATCTTGATCAATCATTTAAAATGATTGTCGGCTTATCTCCAGAAGCTTATGCACGCGCGCGTAAAATGACACTCGCTGCAAat < 1:408952/91‑1 (MQ=255) aTACCATCTTGATCAATCATTTAAAATGATTGTCGGCTTATCTCCAGAAGCTTATGCACGCGCGCGTAAAATGACACTCGCTGCAAatgat > 1:2784471/1‑91 (MQ=255) aTACCATCTTGATCAATCATTTAAAATGATTGTCGGCTTATCTCCAGAAGCTTATGCACGCGCGCGTAAAATGACACTCGCTGCAAatgat < 1:4131279/91‑1 (MQ=255) tACCATCTTGATCAATCATTTAAAATGATTGTCGGCTTATCTCCAGAAGCTTATGCACGCGCGCGTAAAATGACACTCGCTGCAAatgatg < 1:1485654/91‑1 (MQ=255) ccATCTTGATCAATCATTTAAAATGATTGTCGGCTTATCTCCAGAAGCTTATGCACGCGCGCGTAAAATGACACTCGCTGCAAATGAtgtg > 1:2696025/1‑91 (MQ=255) ccATCTTGATCAATCATTTAAAATGATTGTCGGCTTATCTCCAGAAGCTTATGCACGCGCGCGTAAAATGACACTCGCTGCAAATGAtgtg > 1:2467534/1‑91 (MQ=255) cATCTTGATCAATCATTTAAAATGATTGTCGGCTTATCTCCAGAAGCTTATGCACGCGCGCGTAAAATGACACTCGCTGCAAATGATGTGa < 1:4070237/91‑1 (MQ=255) tCTTGATCAATCATTTAAAATGATTGTCGGCTTATCTCCAGAAGCTTATGCACGCGCGCGTAAAATGACACTCGCTGCAAATGATGTGAtt < 1:670537/91‑1 (MQ=255) cTTGATCAATCATTTAAAATGATTGTCGGCTTATCTCCAGAAGCTTATGCACGCGCGCGTAAAATGACACTCGCTGCAAATGATGTGATTa > 1:2455325/1‑91 (MQ=255) cTTGATCAATCATTTAAAATGATTGTCGGCTTATCTCCAGAAGCTTATGCACGCGCGCGTAAAATGACACTCGCTGCAAATGATGTGATTa < 1:487896/91‑1 (MQ=255) ttGATCAATCATTTAAAATGATTGTCGGCTTATCTCCAGAAGCTTATGCACGCGCGCGTAAAATGACACTCGCTGCAAATGATGTGATTaa > 1:1806058/1‑91 (MQ=255) tGATCAATCATTTAAAATGATTGTCGGCTTATCTCCAGAAGCTTATGCACGCGCGCGTAAAATGACACTCGCTGCAAATGATGTGATTAAt < 1:169670/91‑1 (MQ=255) tGATCAATCATTTAAAATGATTGTCGGCTTATCTCCAGAAGCTTATGCACGCGCGCGTAAAATGACACTCGCTGCAAATGATGTGATTAAt < 1:2647495/91‑1 (MQ=255) atcaatcaTTTAAAATGATTGTCGGCTTATCTCCAGAAGCTTATGCACGCGCGCGTAAAATGACACTCGCTGCAAATGATGTGATTAATgg > 1:3864009/1‑91 (MQ=255) aatcaTTTAAAATGATTGTCGGCTTATCTCCAGAAGCTTATGCACGCGCGCGTAAAATGACACTCGCTGCAAATGATGTGATTAATGGTGc > 1:3795732/1‑91 (MQ=255) atcaTTTAAAATGATTGTCGGCTTATCTCCAGAAGCTTATGCACGCGCGCGTAAAATGACACTCGCTGCAAATGATGTGATTAATGGTGCt > 1:1029528/1‑91 (MQ=255) caTTTAAAATGATTGTCGGCTTATCTCCAGAAGCTTATGCACGCGCGCGTAAAATGACACTCGCTGCAAATGATGTGATTAATGGTGCTac < 1:3561843/91‑1 (MQ=255) caTTTAAAATGATTGTCGGCTTATCTCCAGAAGCTTATGCACGCGCGCGTAAAATGACACTCGCTGCAAATGATGTGATTAATGGTGCTac < 1:2121727/91‑1 (MQ=255) caTTTAAAATGATTGTCGGCTTATCTCCAGAAGCTTATGCACGCGCGCGTAAAATGACACTCGCTGCAAATGATGTGATTAATGGTGCTac > 1:2577814/1‑91 (MQ=255) caTTTAAAATGATTGTCGGCTTATCTCCAGAAGCTTATGCACGCGCGCGTAAAATGACACTCGCTGCAAATGATGTGATTAATGGTGCTac > 1:1076847/1‑91 (MQ=255) aTTTTAAATGATTGTCGGCTTATCTCCAGAAGCTTATGCACGCGCGCGTAAAATGACACTCGCTGCAAATGATGTGATTAATGGTGCTaca > 1:4015765/1‑91 (MQ=255) aTTTTAAATGATTGTCGGCTTATCTCCAGAAGCTTATGCACGCGCGCGTAAAATGACACTCGCTGCAAATGATGTGATTAATGGTGCTaca > 1:1674642/1‑91 (MQ=255) aTTTTAAATGATTGTCGGCTTATCTCCAGAAGCTTATGCACGCGCGCGTAAAATGACACTCGCTGCAAATGATGTGATTAATGGTGCTaca > 1:2192142/1‑91 (MQ=255) aTTTTAAATGATTGTCGGCTTATCTCCAGAAGCTTATGCACGCGCGCGTAAAATGACACTCGCTGCAAATGATGTGATTAATGGTGCTaca > 1:2192158/1‑91 (MQ=255) aTTTAAAATGATTGTCGGCTTATCTCCAGAAGCTTATGCACGCGCGCGTAAAATGACACTCGCTGCAAATGATGTGATTAATGGTGCTaca < 1:2975237/91‑1 (MQ=255) aTTTAAAATGATAGTCGGCTTATCTCCAGAAGCTTATGCACGCGCGCGTAAAATGACACTCGCTGCAAATGATGTGATTAATGGTGCTaca > 1:3198024/1‑91 (MQ=255) tttAAAATGATTGTCGGCTTATCTCCAGAAGCTTATGCACGCGCGCGTAAAATGACACTCGCTGCAAATGATGTGATTAATGGTGCTacac < 1:1447920/91‑1 (MQ=255) tttAAAATGATTGTCGGCTTATCTCCAGAAGCTTATGCACGCGCGCGTAAAATGACACTCGCTGCAAATGATGTGATTAATGGTGCTacac > 1:1867190/1‑91 (MQ=255) tttAAAATGATTGTCGGCTTATCTCCAGAAGCTTATGCACGCGCGCGTAAAATGACACTCGCTGCAAATGATGTGATTAATGGTGCTacac < 1:1180986/91‑1 (MQ=255) | TATTGAAGATCGTTTATTAGAGCCTTTCAATTTGCAAGAATTAAGTGATTACGTTGGTCTTTCGCCATACCATCTTGATCAATCATTTAAAATGATTGTCGGCTTATCTCCAGAAGCTTATGCACGCGCGCGTAAAATGACACTCGCTGCAAATGATGTGATTAATGGTGCTACAC > USA300TCH1516_ALE/1622687‑1622862 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |