| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | USA300TCH1516_ALE | 1,962,405 | C→T | 5.5% | intergenic (‑294/+178) | USA300TCH1516_01825 ← / ← ydeN | tRNA‑Met/Putative hydrolase YdeN |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | USA300TCH1516_ALE | 1,962,405 | 0 | C | T | 5.5% | 407.6 / 7.8 | 121 | intergenic (‑294/+178) | USA300TCH1516_01825/ydeN | tRNA‑Met/Putative hydrolase YdeN |
| Reads supporting (aligned to +/- strand): ref base C (46/68); new base T (2/5); total (48/73) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 7.02e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 124 total aligned reads displayed.
GCTTCTTATTCCCTTTTATCATATAAGTGTCTAATAGTTGTCATAAATAGTGTTAAAGCATTTAAAAAGGTATAGGAGTTATAAAGTTTACAACGCCTATACCTTCTGAAAAAGAAATTATAAAAGCTTGTTACACCGCATATTCTTTCAGTCAGCGACTACCAATATAACATTGTAGC > USA300TCH1516_ALE/1962315‑1962493 | gCTTCTTATTCCCTTTTATCATATAAGTGTCTAATAGTTGTCATAAATAGTGTTAAAGCATTTAAAAAGGTATAGGAGTTATAAAGTTTAc < 1:1151291/91‑1 (MQ=255)gCTTCTTATTCCCTTTTATCATATAAGTGTCTAATAGTTGTCATAAATAGTGTTAAAGCATTTAAAAAGGTATAGGAGTTATAAAGTTTAc > 1:3433995/1‑91 (MQ=255)gCTTCTTATTCCCTTTTATCATATAAGTGTCTAATAGTTGTCATAAATAGTGTTAAAGCATTTAAAAAGGTATAGGAGTTATAAAGTTTAc > 1:3434386/1‑91 (MQ=255) ttcttATTCCCTTTTATCATATAAGTGTCTAATAGTTGTCATAAATAGTGTTAAAGCATTTAAAAAGGTATAGGAGTTATAAAGTTTACaa > 1:1154348/1‑91 (MQ=255) ttcttATTCCCTTTTATCATATAAGTGTCTAATAGTTGTCATAAATAGTGTTAAAGCATTTAAAAAGGTATAGGAGTTATAAAGTTTACaa > 1:369153/1‑91 (MQ=255) cttATTCCCTTTTATCATATAAGTGTCTAATAGTTGTCATAAATAGTGTTAAAGCATTTAAAAAGGTATAGGAGTTATAAAGTTTACAACg < 1:1688100/91‑1 (MQ=255) ttATTCCCTTTTATCATATAAGTGTCTAATAGTTGTCATAAATAGTGTTAAAGCATTTAAAAAGGTATAGGAGTTATAAAGTTTACAACGc > 1:1979213/1‑91 (MQ=255) ttATTCCCTTTTATCATATAAGTGTCTAATAGTTGTCATAAATAGTGTTAAAGCATTTAAAAAGGTATAGGAGTTATAAAGTTTACAACGc < 1:1074855/91‑1 (MQ=255) tATTCCCTTTTATCATATAAGTGTCTAATAGTTGTCATAAATAGTGTTAAAGCATTTAAAAAGGTATAGGAGTTATAAAGTTTACAACGcc > 1:2831719/1‑91 (MQ=255) tATTCCCTTTTATCATATAAGTGTCTAATAGTTGTCATAAATAGTGTTAAAGCATTTAAAAAGGTATAGGAGTTATAAAGTTTACAACGcc < 1:2583388/91‑1 (MQ=255) tATTCCCTTTTATCATATAAGTGTCTAATAGTTGTCATAAATAGTGTTAAAGCATTTAAAAAGGTATAGGAGTTATAAAGTTTACAACGcc < 1:2664634/91‑1 (MQ=255) ttCCCTTTTATCATATAAGTGTCTAATAGTTGTCATAAATAGTGTTAAAGCATTTAAAAAGGTATAGGCGTTGTAAACTTTATAACTCCta < 1:1560014/91‑1 (MQ=25) cccTTTTATCATATAAGTGTCTAATAGTTGTCATAAATAGTGTTAAAGCATTTAAAAAGGTATAGGAGTTATAAAGTTTACAACGCCtata > 1:872016/1‑91 (MQ=255) cTTTTATCATATAAGTGTCTAATAGTTGTCATAAATAGTGTTAAAGCATTTAAAAAGGTATAGGCGTTGTAAACTTTATAACTCCTATAcc < 1:3739296/91‑1 (MQ=25) cTTTTATCATATAAGTGTCTAATAGTTGTCATAAATAGTGTTAAAGCATTTAAAAAGGTATAGGAGTTATAAAGTTTATAACGCCTATAcc < 1:3171641/91‑1 (MQ=255) ttttATCATATAAGTGTCTAATAGTTGTCATAAATAGTGTTAAAGCATTTAAAAAGGTATAGGAGTTATAAAGTTTACAACGCCTATACCt < 1:2693127/91‑1 (MQ=255) tttATCATATAAGTGTCTAATAGTTGTCATAAATAGTGTTAAAGCATTTAAAAAGGTATAGGAGTTATAAAGTTTACAACGCCTATACCtt > 1:542928/1‑91 (MQ=255) tATCATATAAGTGTCTAATATTTGTCATAAATAGTGTTAAAGCATTTAAAAAGGTATAGGAGTTATAAAGTTTACAACGCCTATACCTTCt < 1:2794145/91‑1 (MQ=255) tATCATATAAGTGTCTAATAGTTGTCATAAATAGTGTTAAAGCATTTAAAAAGGTATAGGAGTTATAAAGTTTACAACGCCTATACCTTCt > 1:1003849/1‑91 (MQ=255) tATCATATAAGTGTCTAATAGTTGTCATAAATAGTGTTAAAGCATTTAAAAAGGTATAGGAGTTATAAAGTTTACAACGCCTATACCTTCt > 1:2656055/1‑91 (MQ=255) aTCATATAAGTGTCTAATAGTTGTCATAAATAGTGTTAAAGCATTTAAAAAGGTATAGGAGTTATAAAGTTTACAACGCCTATACCTTCTg < 1:757802/91‑1 (MQ=255) aTCATATAAGTGTCTAATAGTTGTCATAAATAGTGTTAAAGCATTTAAAAAGGTATAGGAGTTATAAAGTTTACAACGCCTATACCTTCTg < 1:3381026/91‑1 (MQ=255) aTCATATAAGTGTCTAATAGTTGTCATAAATAGTGTTAAAGCATTTAAAAAGGTATAGGAGTTATAAAGTTTACAACGCCTATACCTTCTg < 1:168056/91‑1 (MQ=255) tCATATAAGTGTCTAATAGTTGTCATAAATAGTGTTAAAGCATTTAAAAAGGTATAGGAGTTATAAAGTTTACAACGCCTATACCTTCTGa > 1:3260990/1‑91 (MQ=255) tCATATAAGTGTCTAATAGTTGTCATAAATAGTGTTAAAGCATTTAAAAAGGTATAGGAGTTATAAAGTTTACAACGCCTATACCTTCTGa < 1:972251/91‑1 (MQ=255) cATATAAGTGTCTAATAGTTGTCATAAATAGTGTTAAAGCATTTAAAAAGGTATAGGAGTTATAAAGTTTACAACGCCTATACCTTCTGaa < 1:2142046/91‑1 (MQ=255) cATATAAGTGTCTAATAGTTGTCATAAATAGTGTTAAAGCATTTAAAAAGGTATAGGAGTTATAAAGTTTACAACGCCTATACCTTCTGaa < 1:2145741/91‑1 (MQ=255) cATATAAGTGTCTAATAGTTGTCATAAATAGTGTTAAAGCATTTAAAAAGGTATAGGAGTTATAAAGTTTACAACGCCTATACCTTCTGaa < 1:2146103/91‑1 (MQ=255) cATATAAGTGTCTAATAGTTGTCATAAATAGTGTTAAAGCATTTAAAAAGGTAGAGGAGTTATAAAGTTTACAACGCCTATACCTTCTGaa < 1:3493251/91‑1 (MQ=255) cATATAAGTGTCGAATAGTTGTCATAAATAGTGTTAAAGCATTTAAAAAGGTATAGGAGTTATAAAGTTTACAACGCCTATACCTTCTGaa > 1:3188866/1‑91 (MQ=255) taAGTTTCTAATAGTTGTCATAAATAGTGTTAAAGCATTTAAAAAGGTATAGGAGTTATAAAGTTTACAACGCCTATACCTTCTGAAAAAg < 1:1790485/91‑1 (MQ=255) aGTGTCTAATAGTTGTCATAAATAGTGTTAAAGCATTTAAAAAGGTATAGGAGTTATAAAGTTTACAACGCCTATACCTTCTGAAAAAGaa > 1:207447/1‑91 (MQ=255) tgtCTAATAGTTGTCATAAATAGTGTTAAAGCATTTAAAAAGGTATAGGAGTTATAAAGTTTACAACGCCTATACCTTCTGAAAAAGAAAt < 1:3384156/91‑1 (MQ=255) gtCTAATAGTTGTCATAAATAGTGTTAAAGCATTTAAAAAGGTATAGGAGTTATAAAGTTTACAACGCCTATACCTTCTGAAAAAGAAAtt < 1:2521927/91‑1 (MQ=255) tCTAATAGTTGTCATAAATAGTGTTAAAGCATTTAAAAAGGTATAGGAGTTATAAAGTTTACAACGCCTATACCTTCTGAAAAAGAAATta < 1:441413/91‑1 (MQ=255) tCTAATAGTTGTCATAAATAGTGTTAAAGCATTTAAAAAGGTATAGGAGTTATAAAGTTTACAACGCCTATACCTTCTGAAAAAGAAATta > 1:3831260/1‑91 (MQ=255) cTAATAGTTGTCATAAATAGTGTTAAAGCATTTAAAAAGGTATAGGAGTTATAAAGTTTACAACGCCTATACCTTCTGAAAAAGAAATtat < 1:3087405/91‑1 (MQ=255) aTAGTTGTCATAAATAGTGTTAAAGCATTTAAAAAGGTATAGGAGTTATAAAGTTTACAACGCCTATACCTTCTGAAAAAGAAATTATaaa > 1:2656872/1‑91 (MQ=255) aTAGTTGTCATAAATAGTGTTAAAGCATTTAAAAAGGTATAGGAGTTATAAAGTTTACAACGCCTATACCTTCTGAAAAAGAAATTATaaa < 1:3388571/91‑1 (MQ=255) aGTTGTCATAAATAGTGTTAAAGCATTTAAAAAGGTATAGGAGTTATAAAGTTTACAACGCCTATACCTTCTGAAAAAGAAATTATAAAAg > 1:3611037/1‑91 (MQ=255) gTTGTCATAAATAGTGTTAAAGCATTTAAAAAGGTATAGGAGTTATAAAGTTTACAACGCCTATACCTTCTGAAAAAGAAATTATAAAAGc < 1:1659641/91‑1 (MQ=255) gTCATAAATAGTGTTAAAGCATTTAAAAAGGTATAGGAGTTATAAAGTTTACAACGCCTATACCTTCTGAAAAAGAAATTATAAAAGCTTg > 1:322710/1‑91 (MQ=255) gTCATAAATAGTGTTAAAGCATTTAAAAAGGTATAGGAGTTATAAAGTTTACAACGCCTATACCTTCTGAAAAAGAAATTATAAAAGCTTg < 1:601073/91‑1 (MQ=255) tCATAAATAGTGTTAAAGCATTTAAAAAGGTATAGGAGTTATAAAGTTTACAACGCCTATACCTTCTGAAAAAGAAATTATAAAAGCTTGt > 1:3372866/1‑91 (MQ=255) cATAAATAGTGTTAAAGCATTTAAAAAGGTATAGGAGTTATAAAGTTTACAACGCCTATACCTTCTGAAAAAGAAATTATAAAAGCTTGtt > 1:2608831/1‑91 (MQ=255) tAAATAGTGTTAAAGCATTTAAAAAGGTATAGGAGTTATAAAGTTTACAACGCCTATACCTTCTGAAAAAGAAATTATAAAAGCTTGTTac < 1:2346456/91‑1 (MQ=255) tAAATAGTGTTAAAGCATTTAAAAAGGTATAGGAGTTATAAAGTTTACAACGCCTATACCTTCTGAAAAAGAAATTATAAAAGCTTGTTac < 1:2346421/91‑1 (MQ=255) tAAATAGTGTTAAAGCATTTAAAAAGGTATAGGAGTTATAAAGTTTACAACGCCTATACCTTCTGAAAAAGAAATTATAAAAGCTTGTTac < 1:2346545/91‑1 (MQ=255) aaTAGTGTTAAAGCATTTAAAAAGGTATAGGAGTTATAAAGTTTACAACGCCTATACCTTCTGAAAAAGAAATTATAAAAGCTTGTTacac < 1:75846/91‑1 (MQ=255) aaTAGTGTTAAAGCATTTAAAAAGGTATAGGAGTTATAAAGTTTACAACGCCTATACCTTCTGAAAAAGAAATTATAAAAGCTTGTTacac < 1:819799/91‑1 (MQ=255) aGTGTTAAAGCATTTAAAAAGGTATAGGAGTTATAAAGTTTACAACGCCTATAGCTTCTGAAAAAGAAATTATAAAAGCTTGTTACACCGc < 1:3498600/91‑1 (MQ=255) aGTGTTAAAGCATTTAAAAAGGTATAGGAGTTATAAAGTTTACAACGCCTATACCTTCTGAAAAAGAAATTATAAAAGCTTGTTACACCGc < 1:1945840/91‑1 (MQ=255) aGTGTTAAAGCATTTAAAAAGGTATAGGAGTTATAAAGTTTACAACGCCTATACCTTCTGAAAAAGAAATTATAAAAGCTTGTTACACCGc < 1:493775/91‑1 (MQ=255) aGTGTTAAAGCATTTAAAAAGGTATAGGAGTTATAAAGTTTACAACGCCTATACCTTCTGAAAAAGAAATTATAAAAGCTTGTTACACCGc < 1:2350393/91‑1 (MQ=255) aGTGTTAAAGCATTTAAAAAGGTATAGGAGTTATAAAGTTTACAACGCCTATACCTTCTGAAAAAGAAATTATAAAAGCTTGTTACACCGc < 1:1944159/91‑1 (MQ=255) aGTGTTAAAGCATTTAAAAAGGTATAGGAGTTATAAAGTTTACAACGCCTATACCTTCTGAAAAAGAAATTATAAAAGCTTGTTACACCGc < 1:1945148/91‑1 (MQ=255) aGTGTTAAAGCATTTAAAAAGGTATAGGAGTTATAAAGTTTACAACGCCTATACCTTCTGAAAAAGAAATTATAAAAGCTTGTTACACCGc < 1:1435252/91‑1 (MQ=255) aGTGTTAAAGCATTTAAAAAGGTATAGGAGTTATAAAGTTTACAACGCCTATACCTTCTGAAAAAGAAATTATAAAAGCTTGTTACACCGc < 1:705055/91‑1 (MQ=255) aGTGTTAAAGCATTTAAAAAGGTATAGGAGTTATAAAGTTTACAACGCCTATACCTTCTGAAAAAGAAATTATAAAAGCTTGTTACACCGc < 1:704721/91‑1 (MQ=255) tgtTAAAGCATTTAAAAAGGTATAGGAGTTATAAAGTTTACAACGCCTATACCTTCTGAAAAAGAAATTATAAAAGCTTGTTACACCGCat < 1:3295944/91‑1 (MQ=255) tgtTAAAGCATTTAAAAAGGTATAGGAGTTATAAAGTTTACAACGCCTATACCTTCTGAAAAAGAAATTATAAAAGCTTGTTACACCGCat < 1:1565753/91‑1 (MQ=255) gtTAAAGCATTTAAAAAGGTATAGGAGTTATAAAGTTTACAACGCCTATACCTTCTGAAAAAGAAATTATAAAAGCTTGTTACACCGCata > 1:1721459/1‑91 (MQ=255) gtTAAAGCATTTAAAAAGGTATAGGAGTTATAAAGTTTACAACGCCTATACCTTCTGAAAAAGAAATTATAAAAGCTTGTTACACCGCata > 1:3520117/1‑91 (MQ=255) gtTAAAGCATTTAAAAAGGTATAGGAGTTATAAAGTTTACAACGCCTATACCTTCTGAAAAAGAAATTATAAAAGCTTGTTACACCGCata > 1:4065930/1‑91 (MQ=255) gtTAAAGCATTTAAAAAGGTATAGGAGTTATAAAGTTTACAACGCCTATACCTTCTGAAAAAGAAATTATAAAAGCTTGTTACACCGCata > 1:2112029/1‑91 (MQ=255) ttAAAGCATTTAAAAAGGTATAGGAGTTATAAAGTTTACAACGCCTATACCTTCTGAAAAAGAAATTATAAAAGCTTGTTACACCGCatat < 1:3909262/91‑1 (MQ=255) tAAAGCATTTAAAAAGGTATAGGAGTTATAAAGTTTACAACGCCTATACCTTCTGAAAAAGAAATTATAAAAGCTTGTTACACCGCATAtt > 1:1252707/1‑91 (MQ=255) tAAAGCATTTAAAAAGGTATAGGAGTTATAAAGTTTACAACGCCTATACCTTCTGAAAAAGAAATTATAAAAGCTTGTTACACCGCATAtt > 1:1203058/1‑91 (MQ=255) aGCATTTAAAAAGGTATAGGAGTTATAAAGTTTACAACGCCTATACCTTCTGAAAAAGAAATTATAAAAGCTTGTTACACCGCATATTCtt < 1:3145632/91‑1 (MQ=255) aGCATTTAAAAAGGTATAGGAGTTATAAAGTTTACAACGCCTATACCTTCTGAAAAAGAAATTATAAAAGCTTGTTACACCGCATATTCtt < 1:3144069/91‑1 (MQ=255) gCATTTAAAAAGGTATAGGAGTTATAAAGTTTACAACGCCTATACCTTCTGAAAAAGAAATTATAAAAGCTTGTTACACCGCATATTCttt < 1:740021/91‑1 (MQ=255) cATTTAAAAAGGTATAGGAGTTATAAAGTTTACAACGCCTATACCTTCTGAAAAAGAAATTATAAAAGCTTGTTACACCGCATATTCTTtc > 1:1378275/1‑91 (MQ=255) aTTTAAAAAGGTATAGGAGTTATAAAGTTTACAACGCCTATACCTTCTGAAAAAGAAATTATAAAAGCTTGTTACACCGCATATTCTTtca < 1:2984131/91‑1 (MQ=255) tttAAAAAGGTATAGGAGTTATAAAGTTTACAACGCCTATACCTTCTGAAAAAGAAATTATACAAGCTTGTTACACCGCATATTCTTtcag > 1:1785676/1‑91 (MQ=255) tttAAAAAGGTATAGGAGTTATAAAGTTTACAACGCCTATACCTTCTGAAAAAGAAATTATAAAAGCTTGTTACACCGCATATTCTTtcag > 1:4087328/1‑91 (MQ=255) tttAAAAAGGTATAGGAGTTATAAAGTTTACAACGCCTATACCTTCTGAAAAAGAAATTATAAAAGCTTGTTACACCGCATATTCTTtcag > 1:3817668/1‑91 (MQ=255) ttAAAAAGGTATAGGAGTTATAAAGTTTACAACGCCTATACCTTCTGAAAAAGAAATTATAAAAGCTTGTTACACCGCATATTCTTtcagt < 1:1292465/91‑1 (MQ=255) tAAAAAGGTATAGGAGTTATAAAGTTTACAACGCCTATACCTTCTGAAAAAGAAATTATAAAAGCTTGTTACACCGCATATTCTTtcagtc < 1:3133407/91‑1 (MQ=255) tAAAAAGGTATAGGAGTTATAAAGTTTACAACGCCTATACCTTCTGAAAAAGAAATTATAAAAGCTTGTTACACCGCATATTCTTtcagtc < 1:3955429/91‑1 (MQ=255) tAAAAAGGTATAGGAGTTATAAAGTTTACAACGCCTATACCTTCTGAAAAAGAAATTATAAAAGCTTGTTACACCGCATATTCTTtcagtc > 1:3025274/1‑91 (MQ=255) aaaGGTATAGGAGTTATAAAGTTTACAACGCCTATACCTTCTGAAAAAGAAATTATAAAAGCTTGTTACACCGCATATTCTTTCAGTCAGc > 1:646872/1‑91 (MQ=255) aaGGTATAGGAGTTATAAAGTTTACAACGCCTATACCTTCTGAAAAAGAAATTATAAAAGCTTGTTACACCGCATATTCTTTCAGTCAGCg < 1:2890896/91‑1 (MQ=255) aGGTATAGGAGTTATAAAGTTTACAACGCCTATACCTTCTGAAAAAGAAATTATAAAAGCTTGTTACACCGCATATTCTTTCAGTCAGCGa > 1:4138989/1‑91 (MQ=255) ggTATAGGAGTTATAAAGTTTACAACGCCTATACCTTCTGAAAAAGAAATTATAAAAGCTTGTTACACCGCATATTCTTTCAGTCAGCGAc < 1:3709858/91‑1 (MQ=255) ggTATAGGAGTTATAAAGTTTACAACGCCTATACCTTCTGAAAAAGAAATTATAAAAGCTTGTTACACCGCATATTCTTTCAGTCAGCGAc < 1:3229653/91‑1 (MQ=255) gTATAGGAGTTATAAAGTTTACAACGCCTATACCTTCTGAAAAAGAAATTATAAAAGCTTGTTACACCGCATATTCTTTCAGTCAGCGACt > 1:2202125/1‑91 (MQ=255) taGGCGTTGTAAACTTTATAACTCCTATACCTTCTGATAAAGAAATTATAAGAGCTTGTTACACCACATATTCTTTCAGTCAGCGACTAcc > 1:3850221/1‑91 (MQ=21) aGGAGTTATAAAGTTTACAACGCCTATACCTTCTGAAAAAGAAATTATAAAAGCTTGTTACACCGCATATTCTTTCAGTCAGCGACTACCa > 1:2359011/1‑91 (MQ=255) gAGTTATAAAGTTTACAACGCCTATACCTTCTGAAAAAGAAATTATAAAAGCTTGTTACACCGCATATTCTTTCAGTCAGCGACTACCAat < 1:1934380/91‑1 (MQ=255) gAGTTATAAAGTTTACAACGCCTATACCTTCTGAAAAAGAAATTATAAAAGCTTGTTACACCGCATATTCTTTCAGTCAGCGACTACCAat > 1:132647/1‑91 (MQ=255) ttATAAAGTTTACAACGCCTATACCTTCTGAAAAAGAAATTATAAAAGCTTGTTACACCGCATATTCTTTCAGTCAGCGACTACCAAtata > 1:437559/1‑91 (MQ=255) ataAAGTTTACAACGCCTATACCTTCTGAAAAAGAAATTATAAAAGCTTGTTACACCGCATATTCTTTCAGTCAGCGACTACCAATATAAc < 1:2795143/91‑1 (MQ=255) ataAAGTTTACAACGCCTATACCTTCTGAAAAAGAAATTATAAAAGCTTGTTACACCGCATATTCTTTCAGTCAGCGACTACCAATATAAc < 1:2793964/91‑1 (MQ=255) taAAGTTTACAACGCCTATACCTTCTGAAAAAGAAATTATAAAAGCTTGTTACACCGCATATTCTTTCAGTCAGCGACTACCAATATAACa < 1:3449135/91‑1 (MQ=255) aaaGTTTACAACGCCTATACCTTCTGAAAAAGAAATTATAAAAGCTTGTTACACCGCATATTCTTTCAGTCAGCGACTACCAATATAACAt > 1:623592/1‑91 (MQ=255) aGTTTACAACGCCTATACCTTCTGAAAAAGAAATTATCAAAGCTTGTTACACCGCATATTCTTTCAGTCAGCGACTACCAATATAACATTg > 1:3504392/1‑91 (MQ=255) aGTTTACAACGCCTATACCTTCTGAAAAAGAAATTATAAAAGCTTGTTACACCGCATATTCTTTCAGTCAGCGACTACCAATATAACATTg > 1:894322/1‑91 (MQ=255) aGTTTACAACGCCTATACCTTCTGAAAAAGAAATTATAAAAGCTTGTTACACCGCATATTCTTTCAGTCAGCGACTACCAATATAACATTg > 1:895106/1‑91 (MQ=255) aGTTTACAACGCCTATACCTTCTGAAAAAGAAATTATAAAAGCTTGTTACACCGCATATTCTTTCAGTCAGCGACTACCAATATAACATTg < 1:1007105/91‑1 (MQ=255) tACAACGCCTATACCTTCTGAAAAAGAAATTATAAAAGCTTGTTACACCGCATATTCTTTCAGTCAGCGACTACCAATATAACATTGTAGc < 1:3402406/91‑1 (MQ=255) | GCTTCTTATTCCCTTTTATCATATAAGTGTCTAATAGTTGTCATAAATAGTGTTAAAGCATTTAAAAAGGTATAGGAGTTATAAAGTTTACAACGCCTATACCTTCTGAAAAAGAAATTATAAAAGCTTGTTACACCGCATATTCTTTCAGTCAGCGACTACCAATATAACATTGTAGC > USA300TCH1516_ALE/1962315‑1962493 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |