Predicted mutation
evidence seq id position mutation freq annotation gene description
RA USA300TCH1516_ALE 2,077,620 T→G 7.9% L174L (CTA→CTC yxlF_3 ← putative ABC transporter ATP‑binding protein YxlF

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*USA300TCH1516_ALE2,077,6200TG 7.9% 346.1 / 16.7 101L174L (CTA→CTCyxlF_3putative ABC transporter ATP‑binding protein YxlF
Reads supporting (aligned to +/- strand):  ref base T (53/40);  new base G (2/6);  total (55/46)
Fisher's exact test for biased strand distribution p-value = 1.37e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.93e-01

Only 100 of 108 total aligned reads displayed.

CATGTTTACATCTTGAACAAAATGTCCGTCTCTTAAAAATACAGCTCTATCACAAATTAATTCAATATCTTCTAACTTATGACTTGATATTAGAATTCTCATATCAAGTTCATTTACTAAAGACTTAATTGTAGTCAGCACATCAATTGAGCCATCTGGATCCATACCATTTGTAGGCTC  >  USA300TCH1516_ALE/2077530‑2077709
                                                                                          |                                                                                         
cATGTTTACATCTTGAACAAAATGTCCGTCTCTTAAAAATACAGCTCTATCACAAATTAATTCAATATCTTCTAACTTATGACTTGATAtt                                                                                           <  1:2692865/91‑1 (MQ=255)
cATGTTTACATCTTGAACAAAATGTCCGTCTCTTAAAAATACAGCTCTATCACAAATTAATTCAATATCTTCTAACTTATGACTTGATAtt                                                                                           <  1:3837116/91‑1 (MQ=255)
cATGTTTACATCTTGAACAAAATGTCCGTCTCTTAAAAATACAGCTCTATCACAAATTAATTCAATATCTTCTAACTTATGACTTGATAtt                                                                                           <  1:3837490/91‑1 (MQ=255)
cATGTTTACATCTTGAACAAAATGTCCGTCTCTTAAAAATACAGCTCTATCACAAATTAATTCAATATCTTCTAACTTATGACTTGATAtt                                                                                           <  1:4047383/91‑1 (MQ=255)
cATGTTTACATCTTGAACAAAATGTCCGTCTCTTAAAAATACAGCTCTATCACAAATTAATTCAATATCTTCTAACTTATGACTTGATAtt                                                                                           <  1:1850925/91‑1 (MQ=255)
 aTGTTTACATCTTGAACAAAATGTCCGTCTCTTAAAAATACAGCTCTATCACAAATTAATTCAATATCTTCTAACTTATGACTTGATATTa                                                                                          <  1:1466740/91‑1 (MQ=255)
 aTGTTTACATCTTGAACAAAATGTCCGTCTCTTAAAAATACAGCTCTATCACAAATTAATTCAATATCTTCTAACTTATGACTTGATATTa                                                                                          <  1:1466955/91‑1 (MQ=255)
 aTGTTTACATCTTGAACAAAATGTCCGTCTCTTAAAAATACAGCTCTATCACAAATTAATTCAATATCTTCTAACTTATGACTTGATATTa                                                                                          <  1:1467106/91‑1 (MQ=255)
  tGTTTACATCTTGAACAAAATGTCCGTCTCTTAAAAATACAGCTCTATCACAAATTAATTCAATATCTTCTAACTTATGACTTGATATTAg                                                                                         >  1:3232654/1‑91 (MQ=255)
  tGTTTACATCTTGAACAAAATGTCCGTCTCTTAAAAATACAGCTCTATCACAAATTAATTCAATATCTTCTAACTTATGACTTGATATTAg                                                                                         >  1:3232711/1‑91 (MQ=255)
  tGTTTACATCTTGAACAAAATGTCCGTCTCTTAAAAATACAGCTCTATCACAAATTAATTCAATATCTTCTAACTTATGACTTGATATTAg                                                                                         >  1:3234706/1‑91 (MQ=255)
  tGTTTACATCTTGAACAAAATGTCCGTCTCTTAAAAATACAGCTCTATCACAAATTAATTCAATATCTTCTAACTTATGACTTGATATTAg                                                                                         >  1:4098850/1‑91 (MQ=255)
         aTCTTGAACAAAATGTCCGTCTCTTAAAAATACAGCTCTATCACAAATTAATTCAATATCTTCTAACTTATGACTTGATATGAGAATtcta                                                                                  <  1:1330753/91‑2 (MQ=255)
          tCTTGAACAAAATGTCCGTCTCTTAAAAATACAGCTCTATCACAAATTAATTCAATATCTTCTAACTTATGACTTGATATGAGAATtctaa                                                                                 <  1:3380464/91‑3 (MQ=255)
          tCTTGAACAAAATGTCCGTCTCTTAAAAATACAGCTCTATCACAAATTAATTCAATATCTTCTAACTTATGACTTGATATGAGAATtctaa                                                                                 <  1:3378158/91‑3 (MQ=255)
           cTTGAACAAAATGTCCGTCTCTTAAAAATACAGCTCTATCACAAATTAATTCAATATCTTCTAACTTATGACTTGATATGAGAATtctaat                                                                                <  1:3661533/91‑4 (MQ=255)
            ttGAACAAAATGTCCGTCTCTTAAAAATACAGCTCTATCACAAATTAATTCAATATCTTCTAACTTATGACTTGATATTAGAATTCTCata                                                                               >  1:1431312/1‑91 (MQ=255)
             tGAACAAAATGTCCGTCTCTTAAAAATACAGCTCTATCACAAATTAATTCAATATCTTCTAACTTATGACTTGATATTAGAATTCTCatat                                                                              <  1:1621929/91‑1 (MQ=255)
              gAACAAAATGTCCGTCTCTTAAAAATACAGCTCTATCACAAATTAATTCAATATCTTCTAACTTATGACTTGATATTAGAATTCTCATATc                                                                             >  1:3513461/1‑91 (MQ=255)
              gAACAAAATGTCCGTCTCTTAAAAATACAGCTCTATCACAAATTAATTCAATATCTTCTAACTTATGACTTGATATTAGAATTCTCATATc                                                                             <  1:1567628/91‑1 (MQ=255)
              gAACAAAATGTCCGTCTCTTAAAAATACAGCTCTATCACAAATTAATTCAATATCTTCTAACTTATGACTTGATATGAGAATTCTAATATc                                                                             <  1:158712/91‑1 (MQ=255)
                 cAAAATGTCCGTCTCTTAAAAATACTGCTCTATCACAAATTAATTCAATATCTTCTAACTTATGACTTGATATTAGAATTCTCATATCAAg                                                                          <  1:3871935/91‑1 (MQ=255)
                  aaaaTGTCCGTCTCTTAAAAATACAGCTCTATCACAAATTAATTCAATATCTTCTAACTTATGACTTGATATTAGAATTCTCATATCAAGt                                                                         <  1:412038/91‑1 (MQ=255)
                  aaaaTGTCCGTCTCTTAAAAATACAGCTCTATCACAAATTAATTCAATATCTTCTAACTTATGACTTGATATGAGAATTCTAATATCAAGt                                                                         <  1:1683570/91‑1 (MQ=255)
                   aaaTGTCCGTCTCTTAAAAATACAGCTCTATCACAAATTAATTCAATATCTTCTAACTTATGACTTGATATTAGAATTCTCATATCAAGtt                                                                        >  1:509804/1‑91 (MQ=255)
                    aaTGTCCGTCTCTTAAAAATACAGCTCTATCACAAATTAATTCAATATCTTCTAACTTATGACTTGATATTAGAATTCTCATATCAAGTTc                                                                       >  1:2779202/1‑91 (MQ=255)
                    aaTGTCCGTCTCTTAAAAATACAGCTCTATCACAAATTAATTCAATATCTTCTAACTTATGACTTGATATTAGAATTCTCATATCAAGTTc                                                                       >  1:2937516/1‑91 (MQ=255)
                    aaTGTCCGTCTCTTAAAAATACAGCTCTATCACAAATTAATTCAATATCTTCTAACTTATGACTTGATATTAGAATTCTCATATCAAGTTc                                                                       <  1:1208479/91‑1 (MQ=255)
                     aTGTCCGTCTCTTAAAAATACAGCTCTATCACAAATTAATTCAATATCTTCTAACTTATGACTTGATATTAGACTTCTCATATCAAGTTCa                                                                      >  1:3947348/1‑91 (MQ=255)
                     aTGTCCGTCTCTTAAAAATACAGCTCTATCACAAATTAATTCAATATCTTCTAACTTATGACTTGATATTAGAATTCTCATATCAAGTTCa                                                                      >  1:2187900/1‑91 (MQ=255)
                     aTGTCCGTCTCTTAAAAATACAGCTCTATCACAAATTAATTCAATATCTTCTAACTTATGACTTGATATTAGAATTCTCATATCAAGTTCa                                                                      >  1:3947763/1‑91 (MQ=255)
                     aTGTCCGTCTCTTAAAAATACAGCTCTATCACAAATTAATTCAATATCTTCTAACTTATGACTTGATATTAGAATTCTCATATCAAGTTCa                                                                      >  1:2849340/1‑91 (MQ=255)
                       gTCCGTCTCTTAAAAATACAGCTCTATCACAAATTAATTCAATATCTTCTAACTTATGACTTGATATTAGAATTCTCATATCAAGTTCAtt                                                                    >  1:3796960/1‑91 (MQ=255)
                       gTCCGTCTCTTAAAAATACAGCTCTATCACAAATTAATTCAATATCTTCTAACTTATGACTTGATATTAGAATTCTCATATCAAGTTCAtt                                                                    <  1:452142/91‑1 (MQ=255)
                       gTCCGTCTCTTAAAAATACAGCTCTATCACAAATTAACTCAATATCTTCTACCTTATGACTTGATCTTAGAATTCTCATATCAAGCTCAtt                                                                    >  1:3852390/1‑91 (MQ=255)
                        tCCGTCTCTTAAAAATACAGCTCTATCACAAATTAATTCAATATCTTCTAACTTATGACTTGATATTAGAATTCTCATATCAAGTTCGttt                                                                   >  1:3346022/1‑91 (MQ=255)
                         ccGTCTCTTAAAAATACAGCTCTATCACAAATTAATTCAATATCTTCTAACTTATGACTTGATATTAGAATTCTCATATCAAGTTCATTTa                                                                  >  1:1174055/1‑91 (MQ=255)
                          cGTCTCTTAAAAATACAGCTCTATCACAAATTAATTCAATATCTTCTAACTTATGACTTGATATTAGAATTCTCATATCAAGTTCATTTAc                                                                 >  1:1651237/1‑91 (MQ=255)
                               ctTAAAAATACAGCTCTATCACAAATTAATTCAATATCTTCTAACTTATGACTTGATATTAGAATTCTCATATCAAGTTCATTTACTAAAg                                                            <  1:4105414/91‑1 (MQ=255)
                                 tAAAAATACAGCTCTATGACAAATTAATTCAATATCTTCTAACTTATGACTTGATATTAGAATTCTCATATCAAGTTCATTTACTAAAGAc                                                          <  1:3551980/91‑1 (MQ=255)
                                 tAAAAATACAGCTCTATCACAAATTAATTCAATATCTTCTAACTTATGACTTGATATTAGAATTCTCATATCAAGTTCATTTACTAAAGAc                                                          <  1:3162336/91‑1 (MQ=255)
                                 tAAAAATACAGCTCTATCACAAATTAATTCAATATCTTCTAACTTATGACTTGATATTAGAATTCTCATATCAAGTTCATTTACTAAAGAc                                                          <  1:3166479/91‑1 (MQ=255)
                                 tAAAAATACAGCTCTATCACAAATTAATTCAATATCTTCTAACTTATGACTTGATATTAGAATTCTCATATCAAGTTCATTTACTAAAGAc                                                          <  1:2839585/91‑1 (MQ=255)
                                 tAAAAATACAGCTCTATCACAAATTAATTCAATATCTTCTAACTTATGACTTGATATTAGAATTCTCATATCAAGTTCATTTACTAAAGAc                                                          <  1:3162282/91‑1 (MQ=255)
                                 tAAAAATACAGCTCTATCACAAATTAATTCAATATCTTCTAACTTATGACTTGATATTAGAATTCTCATATCAAGTTCATTTACTAAAGAc                                                          <  1:2162639/91‑1 (MQ=255)
                                 tAAAAATACAGCTCTATCACAAATTAATTCAATATCTTCTAACTTATGACTTGATATTAGAATTCTCATATCAAGTTCATTTACTAAAGAc                                                          <  1:2162501/91‑1 (MQ=255)
                                   aaaaTACAGCTCTATCACAAATTAATTCAATATCTTCTAACTTATGACTTGATATTAGAATTCTCATATCAAGTTCATTTACTAAAGACtt                                                        <  1:2967040/91‑1 (MQ=255)
                                   aaaaTACAGCTCTATCACAAATTAATTCAATATCTTCTAACTTATGACTTGATATTAGAATTCTCATATCAAGTTCATTTACTAAAGACtt                                                        <  1:1357896/91‑1 (MQ=255)
                                   aaaaTACAGCTCTATCACAAATTAATTCAATATCTTCTAACTTATGACTTGATATTAGAATTCTCATATCAAGTTCATTTACTAAAGACtt                                                        <  1:1357897/91‑1 (MQ=255)
                                    aaaTACAGCTCTATCACAAATTAATTCAATATCTTCTAACTTATGACTTGATATTAGAATTCTCATATCAAGTTCATTTACTAAAGACTTa                                                       >  1:704981/1‑91 (MQ=255)
                                      aTACAGCTCTATCACAAATTAATTCAATATCTTCTAACTTATGACTTGATATTAGAATTCTCATATCAAGTTCATTTACTAAAGACTTAAt                                                     <  1:3445281/91‑1 (MQ=255)
                                      aTACAGCTCTATCACAAATTAATTCAATATCTTCTAACTTATGACTTGATATTAGAATTCTCATATCAAGTTCATTTACTAAAGACTTAAt                                                     >  1:3701054/1‑91 (MQ=255)
                                       tACAGCTCTATCACAAATTAATTCAATATCTTCTAACTTATGACTTGATATTAGAATTCTCATATCAAGTTCATTTACTAAAGACTTAAtt                                                    <  1:480440/91‑1 (MQ=255)
                                       tACAGCTCTATCACAAATTAATTCAATATCTTCTAACTTATGACTTGATATTAGAATTCTCATATCAAGTTCATTTACTAAAGACTTAAtt                                                    <  1:2004357/91‑1 (MQ=255)
                                       tACAGCTCTATCACAAATTAATTCAATATCTTCTAACTTATGACGTGATATTAGATTTCTCATATCAAGTTCATTTACTAAAGACTTAAtt                                                    <  1:2004358/91‑1 (MQ=255)
                                         cAGCTCTATCACAAATTAATTCAATATCTTCTAACTTATGACTTGATATTAGAATTCTCATATCAAGTTCATTTACTAAAGACTTAATTGt                                                  >  1:146434/1‑91 (MQ=255)
                                         cAGCTCTATCACAAATTAATTCAATATCTTCTAACTTATGACTTGATATTAGAATTCTCATATCAAGTTCATTTACTAAAGACTTAATTGt                                                  >  1:3596456/1‑91 (MQ=255)
                                         cAGCTCTATCACAAATTAATTCAATATCTTCTAACTTATGACTTGATATTAGAATTCTCATATCAAGTTCATTTACTAAAGACTTAATTGt                                                  >  1:2280317/1‑91 (MQ=255)
                                         cAGCTCTATCACAAATTAATTCAATATCTTCTAACTTATGACTTGATATTAGAATTCTCATATCAAGTTCATTTACTAAAGACTTAATTGt                                                  <  1:2713467/91‑1 (MQ=255)
                                          aGCTCTATCACAAATTAATTCAATATCTTCTAACTTATGACTTGATATTAGAATTCTCATATCAAGTTCATTTACTAAAGACTTAATTGTa                                                 >  1:1620891/1‑91 (MQ=255)
                                           gCTCTATCACAAATTAATTCAATATCTTCTAACTTATGACTTGATATTAGAATTCTCATATCAAGTTCATTTACTAAAGACTTAATTGTAg                                                >  1:842443/1‑91 (MQ=255)
                                                  cacaAATTAATTCAATATCTTCTAACTTATGACTTGATATTAGAATTCTCATATCAAGTTCATTTACTAAAGACTTAATTGTAGTCAGcac                                         <  1:2877014/91‑1 (MQ=255)
                                                   acaAATTAATTCAATATCTTCTAACTTATGACTTGATATTAGAATTCTCATATCAAGTTCATTTACTAAAGACTTAATTGTAGTCAGcaca                                        >  1:2776489/1‑91 (MQ=255)
                                                   acaAATTAATTCAATATCTTCTAACTTATGACTTGATATTAGAATTCTCATATCAAGTTCATTTACTAAAGACTTAATTGTAGTCAGcaca                                        <  1:469589/91‑1 (MQ=255)
                                                   acaAATTAATTCAATATCTTCTAACTTATGACTTGATATTAGAATTCTCATATCAAGTTCATTTACTAAAGACTTAATTGTAGTCAGcaca                                        >  1:2776631/1‑91 (MQ=255)
                                                    caAATTAATTCAATATCTTCTAACTTATGACTTGATATTAGAATTCTCATATCAAGTTCATTTACTAAAGACTTAATTGTAGTCAGCACAt                                       >  1:3979759/1‑91 (MQ=255)
                                                     aaaTTAATTCAATATCTTCTAACTTATGACTTGATATTAGAATTCTCATATCAAGTTCATTTACTAAAGACTTAATTGTAGTCAGCACATc                                      >  1:3599326/1‑91 (MQ=255)
                                                          aattCAATATCTTCTAACTTATGACTTGATATTAGAATTCTCATATCAAGTTCATTTACTAAAGACTTAATTGTAGTCAGCACATCAATTg                                 >  1:1360154/1‑91 (MQ=255)
                                                            ttCAATATCTTCTAACTTATGACTTGATATTAGAATTCTCATATCAAGTTCATCTACTAAAGACTTAATTGTAGTCAGCACATCAATTGAg                               <  1:3503657/91‑1 (MQ=255)
                                                             tCAATATCTTCTAACTTATGACTTGATATTAGAATTCTCATATCAAGTTCATTTACTAAAGACTTAATTGTAGTCAGCTCATCAATTGAGc                              <  1:3177590/91‑1 (MQ=255)
                                                             tCAATATCTTCTAACTTATGACTTGATATTAGAATTCTCATATCAAGTTCATTTACTAAAGACTTAATTGTAGTCAGCACATCAATTGAGc                              <  1:1286192/91‑1 (MQ=255)
                                                             tCAATATCTTCTAACTTATGACTTGATATTAGAATTCTCATATCAAGTTCATTTACTAAAGACTTAATTGTAGTCAGCACATCAATTGAGc                              >  1:505995/1‑91 (MQ=255)
                                                             tCAATATCTTCTAACTTATGACTTGATATTAGAATTCTCATATCAAGTTCATTTACTAAAGACTTAATTGTAGTCAGCACATCAATTGAGc                              >  1:474274/1‑91 (MQ=255)
                                                             tCAATATCTTCTAACTTATGACTTGATATTAGAATTCTCATATCAAGTTCATTTACTAAAGACTTAATTGTAGTCAGCACATCAATTGAGc                              >  1:2134152/1‑91 (MQ=255)
                                                             tCAATATCTTCTAACTTATGACTTGATATTAGAATTCTCATATCAAGTTCATTTACTAAAGACTTAATTGTAGTCAGCACATCAATTGAGc                              >  1:2397429/1‑91 (MQ=255)
                                                                 tatCTTCTAACTTATGACTTGATATTAGAATTCTCATATCAAGTTCATTTACTAAAGACTTAATTGTAGTCAGCACATCAATTGAGCCATc                          <  1:726027/91‑1 (MQ=255)
                                                                    cttctAACTTATGACTTGATATTAGAATTCTCATATCAAGTTCATTTACTAAAGACTTAATTGTAGTCAGCACATCAATTGAGCCATCTgg                       >  1:690011/1‑91 (MQ=255)
                                                                    cttctAACTTATGACTTGATATTAGAATTCTCATATCAAGTTCATTTACTAAAGACTTAATTGTAGTCAGCACATCAATTGAGCCATCTgg                       <  1:1115004/91‑1 (MQ=255)
                                                                     ttctAACTTATGACTTGATATTAGAATTCTCATATCAAGTTCATTTACTAAAGACTTAATTGTAGTCAGCACATCAATTGAGCCATCTGGa                      >  1:2225115/1‑91 (MQ=255)
                                                                          aCTTATGACTTGATATTAGAATTCTCATATCAAGTTCATTTACTAAAGACTTAATTGTAGTCAGCACATCAATTGAGCCATCTGGATCCAt                 >  1:2061582/1‑91 (MQ=255)
                                                                          aCTTATGACTTGATATTAGAATTCTCATATCAAGTTCATTTACTAAAGACTTAATTGTAGTCAGCACATCAATTGAGCCATCTGGATCCAt                 >  1:337573/1‑91 (MQ=255)
                                                                          aCTTATGACTTGATATTAGAATTCTCATATCAAGTTCATTTACTAAAGACTTAATTGTAGTCAGCACATCAATTGAGCCATCTGGATCCAt                 <  1:2240508/91‑1 (MQ=255)
                                                                          aCTTATGACTTGATATTAGAATTCTCATATCAAGTTCATTTACTAAAGACTTAATTGTAGTCAGCACATCAATTGAGCCATCTGGATCCAt                 <  1:1797945/91‑1 (MQ=255)
                                                                          aCTTATGACTTGATATTAGAATTCTCATATCAAGTTCATTTACTAAAGACTTAATTGTAGTCAGCACATCAATTGAGCCATCTGGATCCAt                 <  1:1667398/91‑1 (MQ=255)
                                                                             tATGACTTGATATTAGAATTCTCATATCAAGTTCATTTACTAAAGACTTAATTGTAGTCAGCACATCAATTGAGCCATCTGGATCCATAcc              >  1:423242/1‑91 (MQ=255)
                                                                             tATGACTTGATATTAGAATTCTCATATCAAGTTCATTTACTAAAGACTTAATTGTAGTCAGCACATCAATTGAGCCATCTGGATCCATAcc              >  1:3028901/1‑91 (MQ=255)
                                                                              aTGACTTGATATTAGAATTCTCATATCAAGTTCATTTACTAAAGACTTAATTGTAGTCAGCACATCAATTGAGCCATCTGGATCCATACCa             >  1:3892249/1‑91 (MQ=255)
                                                                                  cTTGATATTAGAATTCTCATATCAAGTTCATTTACTAAAGACTTAATTGTAGTCAGCACATCAATTGAGCCATCTGGATCCATACCATTTg         <  1:4094126/91‑1 (MQ=255)
                                                                                   ttGATATTAGAATTCTCATATCAAGTTCATTTACTAAAGACTTAATTGTAGTCAGCACATCAATTGAGCCATCTGGATCCATACCATTTGt        >  1:2600228/1‑91 (MQ=255)
                                                                                     gATATTAGAATTCTCATATCAAGTTCATTTACTAAAGACTTAATTGTAGTCAGCACATCAATTGAGCCATCTGGATCCATACCATTTGTAg      >  1:4043519/1‑91 (MQ=255)
                                                                                     gATATTAGAATTCTCATATCAAGTTCATTTACTAAAGACTTAATTGTAGTCAGCACATCAATTGAGCCATCTGGATCCATACCATTTGTAg      >  1:70053/1‑91 (MQ=255)
                                                                                     gATATTAGAATTCTCATATCAAGTTCATTTACTAAAGACTTAATTGTAGTCAGCACATCAATTGAGCCATCTGGATCCATACCATTTGTAg      >  1:2153355/1‑91 (MQ=255)
                                                                                      atatTAGAATTCTCATATCAAGTTCATTTACTAAAGACTTAATTGTAGTCAGCACATCAATTGAGCCATCTGGATCCATACCATTTGTAgg     >  1:1849738/1‑91 (MQ=255)
                                                                                      atatGAGAATTCTAATATCAAGTTCATTTACTAAAGACTTAATTGTAGTCAGCACATCAATTGAGCCATCTGGATCCATACCATTTGTAgg     >  1:3982242/1‑91 (MQ=255)
                                                                                      atatGAGAATTCTAATATCAAGTTCATTTACTAAAGACTTAATTGTAGTCAGCACATCAATTGAGCCATCTGGATCCATACCATTTGTAgg     >  1:3825363/1‑91 (MQ=255)
                                                                                       tatTAGAATTCTCATATCAAGTTCATTTACTAAAGACTTAATTGTAGTCAGCACATCAATTGAGCCATCTGGATCCATACCATTTGTAGGc    <  1:2286728/91‑1 (MQ=255)
                                                                                       tatTAGAATTCTCATATCAAGTTCATTTACTAAAGACTTAATTGTAGTCAGCACATCAATTGAGCCATCTGGATCCATACCATTTGTAGGc    <  1:2286330/91‑1 (MQ=255)
                                                                                       tatTAGAATTCTCATATCAAGTTCATTTACTAAAGACTTAATTGTAGTCAGCACATCAATTGAGCCATCTGGATCCATACCATTTGTAGGc    >  1:220769/1‑91 (MQ=255)
                                                                                       tatTAGAATTCTCATATCAAGTTCATTTACTAAAGACTTAATTGTAGTCAGCACATCAATTGAGCCATCTGGATCCATACCATTTGTAGGc    <  1:3434539/91‑1 (MQ=255)
                                                                                         ttAGAATTCTCATATCAAGTTCATTTACTAAAGACTTAATTGTAGTCAGCACATCAATTGAGCCATCTGGATCCATACCATTTGTAGGCTc  >  1:3567113/1‑91 (MQ=255)
                                                                                          |                                                                                         
CATGTTTACATCTTGAACAAAATGTCCGTCTCTTAAAAATACAGCTCTATCACAAATTAATTCAATATCTTCTAACTTATGACTTGATATTAGAATTCTCATATCAAGTTCATTTACTAAAGACTTAATTGTAGTCAGCACATCAATTGAGCCATCTGGATCCATACCATTTGTAGGCTC  >  USA300TCH1516_ALE/2077530‑2077709

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: