| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | USA300TCH1516_ALE | 2,352,654 | C→T | 6.5% | intergenic (‑508/+37) | USA300HOU_RS12000 ← / ← rpsI | hypothetical protein/30S ribosomal protein S9 |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | USA300TCH1516_ALE | 2,352,654 | 0 | C | T | 6.5% | 350.7 / 10.4 | 107 | intergenic (‑508/+37) | USA300HOU_RS12000/rpsI | hypothetical protein/30S ribosomal protein S9 |
| Reads supporting (aligned to +/- strand): ref base C (35/65); new base T (2/5); total (37/70) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 7.45e-01 | |||||||||||
Only 100 of 110 total aligned reads displayed.
GGTTCTTCATCTTTTATGGTGGGAAGGTAAAAATTCATTTATATTCTACACATTCCATATTCGCCGCAAAAACGCAAAAAAACACCTCGACATAATATCGAGGTGTTTTGTATATATCGTCCGACAATTAACGTTTTGAGAATTGAGGTGAACGACGAGCTGCTTTAAGACCTGGTT > USA300TCH1516_ALE/2352564‑2352740 | ttcttcATCTTTTATGGTGGGAAGGTAAAAATTCATTTATATTCTACACATTCCATATTCGCCGCAAAAACGCAAAAAAACACCTCGACat < 1:1541249/91‑1 (MQ=255) ttcttcATCTTTTATGGTGGGAAGGTAAAAATTCATTTATATTCTACACATTCCATATTCGCCGCAAAAACGCAAAAAAACACCTCGACat > 1:589070/1‑91 (MQ=255) ttcttcATCTTTTATGGTGGGAAGGTAAAAATTCATTTATATTCTACACATTCCATATTCGCCGCAAAAACGCAAAAAAACACCTCGACat > 1:589058/1‑91 (MQ=255) ttcttcATCTTTTATGGTGGGAAGGTAAAAATTCATTTATATTCTACACATTCCATATTCGCCGCAAAAACGCAAAAAAACACCTCGACat < 1:3166303/91‑1 (MQ=255) tcttcATCTTTTATGGTGGGAAGGTAAAAATTCATTTATATTCTACACATTCCATATTCGCCGCAAAAACGCAAAAAAACACCTCGACata < 1:424402/91‑1 (MQ=255) tcttcATCTTTTATGGTGGGAAGGTAAAAATTCATTTATATTCTACACATTCCATATTCGCCGCAAAAACGCAAAAAAACACCTCGACata < 1:424401/91‑1 (MQ=255) ttcATCTTTTATGGTGGGAAGGTAAAAATTCATTTATATTCTACACATTCCATATTCGCCGCAAAAACGCAAAAAAACACCTCGatattat < 1:1958890/91‑4 (MQ=255) ttcATCTTTTATGGTGGGAAGGTAAAAATTCATTTATATTCTACACATTCCATATTCGCCGCAAAAACGCAAAAAAACACCTCGACataat < 1:3652503/91‑1 (MQ=255) cATCTTTTATGGTGGGAAGGTAAAAATTCATTTATATTCTACACATTCCATATTCGCCGCAAAAACGCAAAAAAACACCTCGACATAatat > 1:2760083/1‑91 (MQ=255) aTCTTTTATGGTGGGAAGGTAAAAATTCATTTATATTCTACACATTCCATATTCGCCGCAAAAACGCAAAAAAACACCTCGACATAATATc > 1:2029042/1‑91 (MQ=255) aTCTTTTATGGTGGGAAGGTAAAAATTCATTTATATTCTACACATTCCATATTCGCCGCAAAAACGCAAAAAAACACCTCGACATAATATc < 1:3049449/91‑1 (MQ=255) tCTTTTATGGTGGGAAGGTAAAAATTCATTTATATTCTACACATTCCATATTCGCCGCAAAAACGCAAAAAAACACCTCGACATAATATCg < 1:3802416/91‑1 (MQ=255) cTTTTATGGTGGGAAGGTAAAAATTCATTTATATTCTACACATTCCATATTCGCCGCAAAAACGCAAAAAAACACCTCGACATAATATCGa < 1:592130/91‑1 (MQ=255) ttttATGGTGGGAAGGTAAAAATTCATTTATATTCTACACATTCCATATTCGCCGCAAAAACGCAAAAAAACACCTCGACATAATATCGAg < 1:2940999/91‑1 (MQ=255) ttttATGGTGGGAAGGTAAAAATTCATTTATATTCTACACATTCCATATTCGCCGCAAAAACGCAAAAAAACACCTCGACATAATATCGAg < 1:3697098/91‑1 (MQ=255) tttATGGTGGGAAGGTAAAAATTCATTTATATTCTACACATTCCATATTCGCCGCAAAAACGCAAAAAAACACCTCGATATTATGTCGAgg < 1:1390037/91‑1 (MQ=38) tttATGGTGGGAAGGTAAAAATTCATTTATATTCTACACATTCCATATTCGCCGCAAAAACGCAAAAAAACACCTCGACATAATATCGAgg < 1:1097326/91‑1 (MQ=255) tttATGGTGGGAAGGTAAAAATTCATTTATATTCTACACATTCCATATTCGCCGCAAAAACGCAAAAAAACACCTCGACATAATATCGAgg < 1:1564703/91‑1 (MQ=255) ttATGGTGGGAAGGTAAAAATTCATTTATATTCTACACATTCCATATTCGCCGCAAAAACGCAAAAAAACACCTCGATATTATGTCGAGgt < 1:1919250/91‑1 (MQ=38) ttATGGTGGGAAGGTAAAAATTCATTTATATTCTACACATTCCATATTCGCCGCAAAAACGCAAAAAAACACCTCGACATAATATCGAGgt > 1:1432404/1‑91 (MQ=255) tATGGTGGGAAGGTAAAAATTCATTTATATTTTACACATTCCATATTCGCCGCAAAAACGCAAAAAACCACCTCGACATAAAATCGAGgtg > 1:347412/1‑91 (MQ=255) tATGGTGGGAAGGTAAAAATTCATTTATATTCTACACATTCCATATTCGCCGCAAAAACGCAAAAAAACACCTCGATATTATGTCGAGgtg < 1:2947394/91‑1 (MQ=38) tATGGTGGGAAGGTAAAAATTCATTTATATTCTACACATTCCATATTCGCCGCAAAAACGCAAAAAAACACCTCGACATAATATCGAGgtg > 1:670351/1‑91 (MQ=255) aTGGTGGGAAGGTAAAAATTCATTTATATTCTACACATTCCATATTCGCCGCAAAAACGCAAAAAAACACCTCGACATAATATCGAGgtgt < 1:747464/91‑1 (MQ=255) aTGGGGGGAAGGTAAAAATTCATTTATATTCTACACATTCCATATTCGCCGCAAAAACGCAAAAAAACACCTCGACATAATATCGAGgtgt < 1:3476304/91‑1 (MQ=255) tggtggGAAGGTAAAAATTCATTTATATTCTACACATTCCATATTCGCCGCAAAAACGCAAAAAAACACCTCGATATTATGTCGAGGTGtt < 1:2401845/91‑1 (MQ=38) tggtggGAAGGTAAAAATTCATTTATATTCTACACATTCCATATTCGCCGCAAAAACGCAAAAAAACACCTCGATATTATGTCGAGGTGtt < 1:2401447/91‑1 (MQ=38) tggtggGAAGGTAAAAATTCATTTATATTCTACACATTCCATATTCGCCGCAAAAACGCAAAAAAACACCTCGACCTAATATCGAGGTGtt > 1:1352438/1‑91 (MQ=255) tggtggGAAGGTAAAAATTCATTTATATTCTACACATTCCATATTCGCCGCAAAAACGCAAAAAAACACCTCGACATAATATCGAGGTGtt > 1:2256535/1‑91 (MQ=255) ggtggGAAGGTAAAAATTCATTTATATTCTACACATTCCATATTCGCCGCAAAAACGCAAAAAAACACCTCGACATAATATCGAGGTGttt > 1:258452/1‑91 (MQ=255) tggGAAGGTAAAAATTCATTTATATTCTACACATTCCATATTCGCCGCAAAAACGCAAAAAAACACCTCGACATAATATCGAGGTGTTTTg > 1:870672/1‑91 (MQ=255) gggAAGGTAAAAATTCATTTATATTCTACACATTCCATATTCGCCGCAAAAACGCAAAAAAACACCTCGACATAATATCGAGGTGTTTTGt > 1:121945/1‑91 (MQ=255) gggAAGGTAAAAATTCATTTATATTCTACACATTCCATATTCGCCGCAAAAACGCAAAAAAACACCTCGACATAATATCGAGGTGTTTTGt > 1:307766/1‑91 (MQ=255) ggAAGGTAAAAATTCATTTATATTCTACACATTCCATATTCGCCGCAAAAACACAAAAAAACACCTCGACATAATATCGAGGTGTTTTGta > 1:723524/1‑91 (MQ=255) ggAAGGTAAAAATTCATTTATATTCTACACATTCCATATTCGCCGCAAAAACACAAAAAAACACCTCGACATAATATCGAGGTGTTTTGta > 1:722999/1‑91 (MQ=255) aGGTAAAAATTCATTTATATTCTACACATTCCATATTCGCCGCAAAAACGCAAAAAAACACCTCGACATAATATCGAGGTGTTTTGtatat < 1:3587714/91‑1 (MQ=255) aGGTAAAAATTCATTTATATTCTACACATTCCATATTCGCCGCAAAAACGCAAAAAAACACCTCGACATAATATCGAGGTGTTTTGtatat < 1:3587470/91‑1 (MQ=255) aGGTAAAAATTCATTTATATTCTACACATTCCATATTCGCCGCAAAAACGCAAAAAAACACCTCGACATAATATCGAGGTGTTTTGtatat < 1:3774194/91‑1 (MQ=255) ggTAAAAATTCATTTATATTCTACACATTCCATATTCGCCGCAAAAACGCAAAAAAACACCTCGACATAATATCGAGGTGTTTTGtatata > 1:1632556/1‑91 (MQ=255) gTAAAAATTCATTTATATTCTACACATTCCATATTCGCCGCAAAAACGCAAAAAAACACCTCGACATAATATCGAGGTGTTTTGTatatat < 1:1995255/91‑1 (MQ=255) gTAAAAATTCATTTATATTCTACACATTCCATATTCGCCGCAAAAACGCAAAAAAACACCTCGACATAATATCGAGGTGTTTTGTatatat > 1:701828/1‑91 (MQ=255) gTAAAAATTCATTTATATTCTACACATTCCATATTCGCCGCAAAAACGCAAAAAAACACCTCGACATAATATCGAGGTGTTTTGTatatat > 1:1569302/1‑91 (MQ=255) aaaaTTCATTTATATTCTACACATTCCATATTCGCCGCAAAAACGCAAAAAAACACCTCGACATAATATCGAGGTGTTTTGTATATATCGt < 1:4136311/91‑1 (MQ=255) aaaaTTCATTTATATTCTACACATTCCATATTCGCCGCAAAAACGCAAAAAAACACCTCGACATAATATCGAGGTGTTTTGTATATATCGt < 1:4135820/91‑1 (MQ=255) aTTCATTTATATTCTACACATTCCATATTCGCCGCAAAAACGCAAAAAAACACCTCGACATAATATCGAGGTGTTTTGTATATATCGTCCg < 1:1991478/91‑1 (MQ=255) cATTTATATTCTACACATTCCATATTCGCCGCAAAAACGCAAAAAAACACCTCGACATAATATCGAGGTGTTTTGTATATATCGTCCGACa > 1:3696199/1‑91 (MQ=255) cATTTATATTCTACACATTCCATATTCGCCGCAAAAACGCAAAAAAACACCTCGACATAATATCGAGGTGTTTTGTATATATCGTCCGACa > 1:3696200/1‑91 (MQ=255) cATTTATATTCTACACATTCCATATTCGCCGCAAAAACGCAAAAAAACACCTCGACATAATATCGAGGTGTTTTGTATATATCGTCCGACa > 1:1029674/1‑91 (MQ=255) tttATATTCTACACATTCCATATTCGCCGCAAAAACGCAAAAAAACACCTCGACATAATATCGAGGTGTTTTGTATATATCGTCCGACAAt > 1:2670204/1‑91 (MQ=255) ttATATTCTACACATTCCATATTCGCCGCAAAAACGCAAAAAAACACCTCGACTTAATATCGAGGTGTTTTGTATATATCGTCCGACAAtt < 1:3505304/91‑1 (MQ=255) ttATATTCTACACATTCCATATTCGCCGCAAAAACGCAAAAAAACACCTCGACGTAATATCGAGGTGTTTTGTATATATCGTCCGACAAtt < 1:3505617/91‑1 (MQ=255) ttATATTCTACACATTCCATATTCGCCGCAAAAACGCAAAAAAACACCTCGACATAATATCGAGGTGTTTTGTATATATCGTCCGACAAtt < 1:1081314/91‑1 (MQ=255) ttATATTCTACACATTCCATATTCGCCGCAAAAACGCAAAAAAACACCTCGACATAATATCGAGGTGTTTTGTATATATCGTCCGACAAtt > 1:1184349/1‑91 (MQ=255) tataTTCTACACATTCCATATTCGCCGCAAAAACGCAAAAAAACACCTCGACATAATATCGAGGTGTTTTGTATATATCGTCCGACAATTa < 1:1193683/91‑1 (MQ=255) tataTTCTACACATTCCATATTCGCCGCAAAAACGCAAAAAAACACCTCGACATAATATCGAGGTGTTTTGTATATATCGTCCGACAATTa < 1:3156467/91‑1 (MQ=255) tataTGCTACACATTCCATATTCGCCGCAAAAACGCAAAAAAACACCTCGACATAATATCGAGGTGTTTTGTATATATCGTCCGACAATTa < 1:3156282/91‑1 (MQ=255) atatTCTACACATTCCATATTCGCCGCAAAAACGCAAAAAAACACCTCGACATAATATCGAGGTGTTTTGTATATATCGTCCGACAATTaa > 1:1190735/1‑91 (MQ=255) tatTCTACACATTCCATATTCGCCGCAAAAACGCAAAAAAACACCTCGACATAATATCGAGGTGTTTTGTATATATCGTCCGACAATTAAc < 1:2514375/91‑1 (MQ=255) tatTCTACACATTCCATATTCGCCGCAAAAACGCAAAAAAACACCTCGACATAATATCGAGGTGTTTTGTATATATCGTCCGACAATTAAc < 1:1747312/91‑1 (MQ=255) atTCTACACATTCCATATTCGCCGCAAAAACGCAAAAAAACACCTCGACATAATATCGAGGTGTTTTGTATATATCGTCCGACAATTAACg < 1:1359707/91‑1 (MQ=255) atTCTACACATTCCATATTCGCCGCAAAAACGCAAAAAAACACCTCGACATAATATCGAGGTGTTTTGTATATATCGTCCGACAATTAACg < 1:3428995/91‑1 (MQ=255) tCTACACATTCCATATTCGCCGCAAAAACGCAAAAAAACACCTCGACATAATATCGAGGTGTTTTGTATATATCGTCCGACAATTAACGtt < 1:783714/91‑1 (MQ=255) tCTACACATTCCATATTCGCCGCAAAAACGCAAAAAAACACCTCGACATAATATCGAGGTGTTTTGTATATATCGTCCGACAATTAACGtt < 1:3664113/91‑1 (MQ=255) tCTACACATTCCATATTCGCCGCAAAAACGCAAAAAAACACCTCGACATAATATCGAGGTGTTTTGTATATATCGTCCGACAATTAACGtt < 1:1467775/91‑1 (MQ=255) acacATTCCATATTCGCCGCAAAAACGCAAAAAAACACCTCGACATAATATCGTGGTGTTTTGTATATATCGTCCGACAATTAACGTTTTg < 1:3499507/91‑1 (MQ=255) acacATTCCATATTCGCCGCAAAAACGCAAAAAAACACCTCGACATAATATCGAGGTGTTTTGTATATATCGTCCGACAATTAACGTTTTg < 1:1510606/91‑1 (MQ=255) acacATTCCATATTCGCCGCAAAAACGCAAAAAAACACCTCGACATAATATCGAGGTGTTTTGTATATATCGTCCGACAATTAACGTTTTg < 1:2249775/91‑1 (MQ=255) acacATTCCATATTCGCCGCAAAAACGCAAAAAAACACCTCGACATAATATCGAGGTGTTTTGTATATATCGTCCGACAATTAACGTTTTg < 1:2249788/91‑1 (MQ=255) acacATTCCATATTCGCCGCAAAAACGCAAAAAAACACCTCGACATAATATCGAGGCGTTTTGTATATATCGTCCGACAATTAACGTTTTg > 1:1001003/1‑91 (MQ=255) cacaTTCCATATTCGCCGCAAAAACGCAAAAAAACACCTCGACATAATATCGAGGTGTTTTGTATATATCGTCCGACAATTAACGTTTTga < 1:2918134/91‑1 (MQ=255) cacaTTCCATATTCGCCGCAAAAACGCAAAAAAACACCTCGACATAATATCGAGGTGTTTTGTATATATCGTCCGACAATTAACGTTTTga < 1:320235/91‑1 (MQ=255) ttCCATATTCGCCGCAAAAACGCAAAAAAACACCTCGACATAATATCGAGGTGTTTTGTATATATCGTCCGACAATTAACGTTTTGAGAAt > 1:3442628/1‑91 (MQ=255) atatTCGCCGCAAAAACGCAAAAAAACACCTCGACATAATATCGAGGTGTTTTGTATATATCGTCCGACAATTAACGTTTTGAGAATTGAg > 1:1734412/1‑91 (MQ=255) tCGCCGCAAAAACGCAAAAAAACACCTCGACATAATATCGAGGTGTTTTGTATATATCGTCCGACAATTAACGTTTTGAGAATTGAGGTGa < 1:1369382/91‑1 (MQ=255) tCGCCGCAAAAACGCAAAAAAACACCTCGACATAATATCGAGGTGTTTTGTATATATCGTCCGACAATTAACGTTTTGAGAATTGAGGTGa < 1:1369441/91‑1 (MQ=255) ccgcAAAAACGCAAAAAAACACCTCGACATAATATCGAGGTGTTTTGTATATATCGTCCGACAATTAACGTTTTGAGAATTGAGGTGAacg > 1:438156/1‑91 (MQ=255) gcaaaaacgcaaaaaAACACCTCGACATAATATCGAGGTGTTTTGTATATATCGTCCGACAATTAACGTTTTGAGAATTGAGGTGAacgac < 1:254898/91‑1 (MQ=255) aaaaacgcaaaaaAACACCTCGACATAATATCGAGGTGTTTTGTATATATCGTCCGACAATTAACGTTTTGAGAATTGAGGTGAAcgacga < 1:3362767/91‑1 (MQ=255) aaaaacgcaaaaaAACACCTCGACATAATATCGAGGTGTTTTGTATATATCGTCCGACAATTAACGTTTTGAGAATTGAGGTGAAcgacga > 1:1998189/1‑91 (MQ=255) aaaacgcgaaaaAACACCTCGACATAATATCGAGGTGTTTTGTATATATCGTCCGACAATTAACGTTTTGAGAATTGAGGTGAACGACGAg < 1:2098592/91‑1 (MQ=255) aaaacgcaaaaaAACACCTCGACATAATATCGAGGTGTTTTGTATATATCGTCCGACAATTAACGTTTTGAGAATTGAGGTGAACGACGAg < 1:262204/91‑1 (MQ=255) aaaacgcaaaaaAACACCTCGACATAATATCGAGGTGTTTTGTATATATCGTCCGACAATTAACGTTTTGAGAATTGAGGTGAACGACGAg < 1:3257374/91‑1 (MQ=255) acgcaaaaaAACACCTCGACATAATATCGAGGTGTTTTGTATATATCGTCCGACAATTAACGTTTTGAGAATTGAGGTGAACGACGAgctg > 1:2194328/1‑91 (MQ=255) acgcaaaaaAACACCTCGACATAATATCGAGGTGTTTTGTATATATCGTCCGACAATTAACGTTTTGAGAATTGAGGTGAACGACGAgctg < 1:1515511/91‑1 (MQ=255) cgcaaaaaAACACCTCGACATAATATCGAGGTGTTTTGTATATATCGTCCGACAATTAACGTTTTGAGAATTGAGGTGAACGACGAgctgc > 1:2522206/1‑91 (MQ=255) cgcaaaaaAACACCTCGACATAATATCGAGGTGTTTTGTATATATCGTCCGACAATTAACGTTTTGAGAATTGAGGTGAACGACGAgctgc < 1:1166592/91‑1 (MQ=255) atacaaaaCACCTCGACATAATATCGAGGTGTTTTGTATATATCGTCCGACAATTAACGTTTTGAGAATTGAGGTGAACGACGAGCTGCtt < 1:822944/87‑1 (MQ=255) aaCACCTCGATATTATGTCGAGGTGTTTTGTATATATCGTCCGACAATTAACGTTTTGAGAATTGAGGTGAACGACGAGCTGCTTTAAGAc > 1:4004660/1‑91 (MQ=14) aaCACCTCGATATTATGTCGAGGTGTTTTGTATATATCGTCCGACAATTAACGTTTTGAGAATTGAGGTGAACGACGAGCTGCTTTAAGAc > 1:4004451/1‑91 (MQ=14) acacCTCGACATAATATCGAGGTGTTTTGTATATATCGTCCGACAATTAACGTTTTGAGAATTGAGGTGAACGACGAGCTGCTTTAAGAcc < 1:124454/91‑1 (MQ=255) acacCTCGACATAATATCGAGGTGTTTTGTATATATCGTCCGACAATTAACGTTTTGAGAATTGAGGTGAACGACGAGCTGCTTTAAGAcc < 1:794461/91‑1 (MQ=255) acacCTCGACATAATATCGAGGTGTTTTGTATATATCGTCCGACAATTAACGTTTTGAGAATTGAGGTGAACGACGAGCTGCTTTAAGAcc < 1:3569321/91‑1 (MQ=255) acacCTCGACATAATATCGAGGTGTTTTGTATATATCGTCCGACAATTAACGTTTTGAGAATTGAGGTGAACGACGAGCTGCTTTAAGAcc < 1:2844011/91‑1 (MQ=255) cacCTCGACATAATATCGAGGTGTTTTGTATATATCGTCCGACAATTAACGTTTTGAGAATTGAGGTGAACGACGAGCTGCTTTAAGACCt < 1:1659882/91‑1 (MQ=255) ccTCGACATAATATCGAGGTGTTTTGTATATATCGTCCGACAATTAACGTTTTGAGAATTGAGGTGAACGACGAGCTGCTTTAAGACCTgg > 1:1749172/1‑91 (MQ=255) ccTCGACATAATATCGAGGTGTTTTGTATATATCGTCCGACAATTAACGTTTTGAGAATTGAGGTGAACGACGAGCTGCTTTAAGACCTgg < 1:2162005/91‑1 (MQ=255) tCGACATAATTTCGAGGTGTTTTGTATATATCGACCGACAATTAACGTTTTGAGAATTGAGGTGAACGACGAGCTGCTTTAAGACCTGGtt < 1:2923970/91‑1 (MQ=255) tCGACATAATATCGAGGTGTTTTGTATATATCGTCCGACAATTAACGTTTTGAGAATTGAGGTGAACGACGAGCTGCTTTAAGACCTGGtt < 1:918898/91‑1 (MQ=255) tCGACATAATATCGAGGTGTTTTGTATATATCGTCCGACAATTAACGTTTTGAGAATTGAGGTGAACGACGAGCTGCTTTAAGACCTGGtt > 1:1743034/1‑91 (MQ=255) tCGACATAATATCGAGGTGTTTTGTATATATCGTCCGACAATTAACGTTTTGAGAATTGAGGTGAACGACGAGCTGCTTTAAGACCTGGtt < 1:3474395/91‑1 (MQ=255) | GGTTCTTCATCTTTTATGGTGGGAAGGTAAAAATTCATTTATATTCTACACATTCCATATTCGCCGCAAAAACGCAAAAAAACACCTCGACATAATATCGAGGTGTTTTGTATATATCGTCCGACAATTAACGTTTTGAGAATTGAGGTGAACGACGAGCTGCTTTAAGACCTGGTT > USA300TCH1516_ALE/2352564‑2352740 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |