Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | USA300TCH1516_ALE | 2,435,510 | G→T | 9.0% | P330Q (CCA→CAA) | yifK ← | putative transport protein YifK |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | USA300TCH1516_ALE | 2,435,510 | 0 | G | T | 9.0% | 359.9 / 19.7 | 108 | P330Q (CCA→CAA) | yifK | putative transport protein YifK |
Reads supporting (aligned to +/- strand): ref base G (43/55); new base T (7/3); total (50/58) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.82e-01 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
Only 100 of 116 total aligned reads displayed.
CTCTTCGCTCCATCGATATATAAAGGTAAAATTACGTTTAATAAAGCACCAATTAAAATACCAAGAGATACTGCTACAACAGTGTACAATGGTACACCATTTCTCATGATTTTAGTAAATATTTTCGGCATTTCACCTTTATGAGCAAGTGTATAAATCATACGACTCGCACTGAAAATAC > USA300TCH1516_ALE/2435420‑2435600 | ctctTCGCTCCATCGATATATAAAGGTAAAATTACGTTTAATAAAGCACCAATTAAAATACCAAGAGATACTGCTACAACAGTGTACAATg > 1:333922/1‑91 (MQ=255) ctctTCGCTCCATCGATATATAAAGGTAAAATTACGTTTAATAAAGCACCAATTAAAATACCAAGAGATACTGCTACAACAGTGTACAATg < 1:1574718/91‑1 (MQ=255) ctctTCGCTCCATCGATATATAAAGGTAAAATTACGTTTAATAAAGCACCAATTAAAATACCAAGAGATACTGCTACAACAGTGTACAATg < 1:365608/91‑1 (MQ=255) ctctTCGCTCCATCGATATATAAAGGTAAAATTACGTTTAATAAAGCACCAATTAAAATACCAAGAGATACTGCTACAACAGTGTACAATg > 1:1791424/1‑91 (MQ=255) ctTCGCTCCATCGATATATAAAGGTAAAATTACGTTTAATAAAGCACCAATTAAAATACCAAGAGATACTGCTACAACAGTGTACAATGGt < 1:677051/91‑1 (MQ=255) ctTCGCTCCATCGATATATAAAGGTAAAATTACGTTTAATAAAGCACCAATTAAAATACCAAGAGATACTGCTACAACAGTGTACAATGGt > 1:1373809/1‑91 (MQ=255) ctTCGCTCCATCGATATATAAAGGTAAAATTACGTTTAATAAAGCACCAATTAAAATACCAAGAGATACTGCTACAACAGTGTACAATGGt > 1:1923540/1‑91 (MQ=255) ctTCGCTCCATCGATATATAAAGGTAAAATTACGTTTAATAAAGCACCAATTAAAATACCAAGAGATACTGCTACAACAGTGTACAATGGt > 1:3673857/1‑91 (MQ=255) cGCTCCATCGATATATAAATGTAAAATTACGTTTAATAAAGCACCAATTAAAATACCAAGAGATACTGCTACAACAGTGTACCATTGTaca < 1:1870312/91‑1 (MQ=255) cGCTCCATCGATATATAAAGGTAAAATTACGTTTAATAAAGCACCAATTAAAATACCAAGAGATACTGCTACAACAGTGTACCATTGTaca < 1:1870539/91‑1 (MQ=255) cTCCATCGATATATAAAGGTAAAATTACGTTTAATAAAGCACCAATTAAAATACCAAGAGATACTGCTACAACAGTGTACAATGGTACAcc < 1:3644909/91‑1 (MQ=255) ccATCGATATATAAAGGTAAAATTACGTTTAATAAAGCACCAATTAAAATACCAAGAGATACTGCTACAACAGTGTACAATGGTACACCAt > 1:2672203/1‑91 (MQ=255) cATCGATATATAAAGGTAAAATTACGTTTAATAAAGCACCAATTAAAATACCAAGAGATACTGCTACAACAGTGTACCATTGTacactgtt < 1:2062948/91‑5 (MQ=255) tCGATATATAAAGGTAAAATTACGTTTAATAAAGCACCAATTAAAATACCAAGAGATACTGCTACAACAGTGTACAATGGTACACCATTtc < 1:3182717/91‑1 (MQ=255) tCGATATATAAAGGTAAAATTACGTTTAATAAAGCACCAATTAAAATACCAAGAGATACTGCTACAACAGTGTACAATGGTACACCATTtc < 1:612763/91‑1 (MQ=255) gATATATAAAGGTAAAATTACGTTTAATAAAGCACCAATTAAAATACCAAGAGATACTGCTACAACAGTGTACAATGGTACACCATTtctc < 1:2310693/91‑1 (MQ=255) tatataAAGGTAAAATTACGTTTAATAAAGCACCAATTAAAATACCAAGAGATACTGCTACAACAGTGTACAATGGTACACCATTTCTCAt > 1:3604089/1‑91 (MQ=255) tataAAGGTAAAATTACGTTTAATAAAGCACCAATTAAAATACCAAGAGATACTGCTACAACAGTGTACAATGGTACACCATTTCTCATGa < 1:1163458/91‑1 (MQ=255) ataAAGGTAAAATTACGTTTAATAAAGCACCAATTAAAATACCAAGAGATACTGCTACAACAGTGTACAATGGTACACCATTTCTCATGAt > 1:1856972/1‑91 (MQ=255) aaGGTAAAATTACGTTTAATAAAGCACCAATTAAAATACCAAGAGATACTGCTACAACAGTGTACAATGGTACACCATTTCTCATGAtttt > 1:2943114/1‑91 (MQ=255) ggTAAAATTACGTTTAATAAAGCACCAATTAAAATACCAAGAGATACTGCTACAACAGTGTACAATGGTACACCATTTCTCATGATTTTAg > 1:1428492/1‑91 (MQ=255) ggTAAAATTACGTTTAATAAAGCACCAATTAAAATACCAAGAGATACTGCTACAACAGTGTACAATGGTACACCATTTCTCATGATTTTAg > 1:2367219/1‑91 (MQ=255) tAAAATTACGTTTAATAAAGCACCAATTAAAATACCAGGAGATACTGCTACAACAGTGTACAATGGTACACCATTTCTCATGATTTTAGTa < 1:2518654/91‑1 (MQ=255) tAAAATTACGTTTAATAAAGCACCAATTAAAATACCAAGAGATACTGCTACAACAGTGTACAATGGTACACCATTTCTCATGATTTTAGTa > 1:557337/1‑91 (MQ=255) aaaaTTACGTTTAATAAAGCACCAATTAAAATACCAAGAGATACTGCTACAACAGTGTACAATGGTACACCATTTCTCATGATTTTAGTaa > 1:2818265/1‑91 (MQ=255) aaaaTTACGTTTAATAAAGCACCAATTAAAATACCAAGAGATACTGCTACAACAGTGTACAATGGTACACCATTTCTCATGATTTTAGTaa > 1:2818095/1‑91 (MQ=255) aaaaTTACGTTTAATAAAGCACCAATTAAAATACCAAGAGATACTGCTACAACAGTGTACAATGGTACACCATTTCTCATGATTTTAGTaa > 1:2817812/1‑91 (MQ=255) aaaaTTACGTTTAATAAAGCACCAATTAAAATACCAAGAGATACTGCTACAACAGTGTACAATGGTACACCATTTCTCATGATTTTAGTaa > 1:2817647/1‑91 (MQ=255) aaaTTACGTTTAATAAAGCACCAATTAAAATACCAAGAGATACTGCTACAACAGTGTACAATGGTACACCATTTCTCATGATTTTAGTaaa > 1:3811811/1‑91 (MQ=255) aaaTTACGTTTAATAAAGCACCAATTAAAATACCAAGAGATACTGCTACAACAGTGTACAATGGTACACCATTTCTCATGATTTTAGTaaa < 1:3938682/91‑1 (MQ=255) aaTTACGTTTAATAAAGCACCAATTAAAATACCAAGAGATACTGCTACAACAGTGTACAATGGTACACCATTTCTCATGATTTTAGTAAat > 1:2044651/1‑91 (MQ=255) aaTTACGTTTAATAAAGCACCAATTAAAATACCAAGAGATACTGCTACAACAGTGTACAATGGTACACCATTTCTCATGATTTTAGTAAat < 1:2706908/91‑1 (MQ=255) aaTTACGTTTAATAAAGCACCAATTAAAATACCAAGAGATACTGCTACAACAGTGTACAATGGTACACCATTTCTCATGATTTTAGTAAat > 1:4136539/1‑91 (MQ=255) aaTTACGTTTAATAAAGCACCAATTAAAATACCAAGAGATACTGCTACAACAGTGTACAATGGTACACCATTTCTCATGATTTTAGTAAat < 1:301035/91‑1 (MQ=255) aCGTTTAATAAAGCACCAATTAAAATACCAAGAGATACTGCTACAACAGTGTACAATGGTACACCATTTCTCATGATTTTAGTAAATAttt < 1:2211592/91‑1 (MQ=255) cGTTTAATAAAGCACCAATTAAAATACCAAGAGATACTGCTACAACAGTGTACAATGGTACACCATTTCTCATGATTTTAGTAAATAtttt > 1:3808767/1‑91 (MQ=255) tttAATAAAGCACCAATTAAAATACCAAGAGATACTGCTACAACAGTGTACAATGGTACACCATTTCTCATGATTTTAGTAAATATTTTCg < 1:2391670/91‑1 (MQ=255) ttAATAAAGCACCAATTAAAATACCAAGAGATACTGCTACAACAGTGTACAATGGTACACCATTTCTCATGATTTTAGTAAATATTTTCgg < 1:3571127/91‑1 (MQ=255) ataaAGCACCAATTAAAATACCAAGAGATACTGCTACAACAGTGTACAATGGTACACCATTTCTCATGATTTTAGTAAATATTTTCGGCAt < 1:2657890/91‑1 (MQ=255) ataaAGCACCAATTAAAATACCAAGAGATACTGCTACAACAGTGTACAATGGTACACCATTTCTCATGATTTTAGTAAATATTTTCGGCAt > 1:3845726/1‑91 (MQ=255) taaAGCACCAATTAAAATACCAAGAGATACTGCTACAACAGTGTACAATGGTACACCATTTCTCATGATTTTAGTAAATATTTTCGGCAtt < 1:3180085/91‑1 (MQ=255) taaAGCACCAATTAAAATACCAAGAGATACTGCTACAACAGTGTACAATGGTACACCATTTCTCATGATTTTAGTAAATATTTTCGGCAtt < 1:1654492/91‑1 (MQ=255) aaaGCACCAATTAAAATACCAAGAGATACTGCTACAACAGTGTACAATGGTACACCATTTCTCATGATTTTAGTAAATATTTTCGGCAttt < 1:4154013/91‑1 (MQ=255) aaaGCACCAATTAAAATACCAAGAGATACTGCTACAACAGTGTACAATGGTACACCATTTCTCATGATTTTAGTAAATATTTTCGGCAttt < 1:4154135/91‑1 (MQ=255) aaaGCACCAATTAAAATACCAAGAGATACTGCTACAACAGTGTACAATGGTACACCATTTCTCATGATTTTAGTAAATATTTTCGGCAttt < 1:513169/91‑1 (MQ=255) aaaGCACCAATTAAAATACCAAGAGATACTGCTACAACAGTGTACAATGGTACACCATTTCTCACGATTTTAGTAAATATTTTCGGCAttt < 1:489116/91‑1 (MQ=255) aaGCACCAATTAAAATACCAAGAGATACTGCTACAACAGTGTACAATGGTACACCATTTCTCATGATTTTAGTAAATAGTTTCGGCATTTc < 1:3188189/91‑1 (MQ=255) aGCACCAATTAAAATACCAAGAGATACTGCTACAACAGTGTACAATGGTACACCATTTCTCATGATTTTAGTAAATATTTTCGGCATTTCa < 1:2710865/91‑1 (MQ=255) aCCAATTAAAATACCAAGAGATACTGCTACAACAGTGTACAATGGTACACCATTTCTCATGATTTTAGTAAATATTTTCGGCATTTCACCt < 1:70996/91‑1 (MQ=255) aaTTAAAATACCAAGAGATACTGCTACAACAGTGTACAATGGTACACCATTTCTCATGATTTTAGTAAATATTTTCGGCATTTCACCTTTa > 1:684238/1‑91 (MQ=255) aaTTAAAATACCAAGAGATACTGCTACAACAGTGTACAATGGTACACCATTTCTCATGATTTTAGTAAATATTTTCGGCATTTCACCTTTa < 1:788690/91‑1 (MQ=255) aaTTAAAATACCAAGAGATACTGCTACAACAGTGTACAATGGTACACCATTTCTCATGATTTTAGTAAATATTTTCGGCATTTCACCTTTa < 1:787609/91‑1 (MQ=255) aaTTAAAATACCAAGAGATACTGCTACAACAGTGTACAATGGTACACCATTTCTCATGATTTTAGTAAATATTTTCGGCATTTCACCTTTa > 1:688268/1‑91 (MQ=255) aTTAAAATACCAAGAGATACTGCTACAACAGTGTACAATGGTACACCATTTCTCATGATTTTAGTAAATATTTTCGGCATTTCACCTTTAt < 1:2570544/91‑1 (MQ=255) aTTAAAATACCAAGAGATACTGCTACAACAGTGTACAATGGTACACCATTTCTCATGATTTTAGTAAATATTTTCGGCATTTCACCTTTAt < 1:2570614/91‑1 (MQ=255) ttAAAATACCAAGAGATACTGCTACAACAGTGTACAATGGTACACCATTTCTCATGATTTTAGTAAATATTTTCGGCATTTCACCTTTATg < 1:1398346/91‑1 (MQ=255) tAAAATACCAAGAGATACTGCTACAACAGTGTACAATGGTACACCATTTCTCATGATTTTAGTAAATATTTTCGGCATTTCACCTTTATGa < 1:2490027/91‑1 (MQ=255) tAAAATACCAAGAGATACTGCTACAACAGTGTACAATGGTACACCATTTCTCATGATTTTAGTAAATATTTTCGGCATTTCACCTTTATGa < 1:3317641/91‑1 (MQ=255) aaaaTACCAAGAGATACTGCTACAACAGTGTACAATGGTACACCATTTCTCATGATTTTAGTAAATATTTTCGGCATTTCACCTTTATGAg > 1:3789920/1‑91 (MQ=255) aaaaTACCAAGAGATACTGCTACAACAGTGTACAATGGTACACCATTTCTCATGATTTTAGTAAATATTTTCGGCATTTCACCTTTATGAg > 1:3789970/1‑91 (MQ=255) aaTACCAAGAGATACTGCTACAACAGTGTACAATGGTACACCATTTCTCATGATTTTAGTAAATATTTTCGGCATTTCACCTTTATGAGCa < 1:3063946/91‑1 (MQ=255) aaTACCAAGAGATACTGCTACAACAGTGTACAATGGTACACCATTTCTCATGATTTTAGTAAATATTTTCGGCATTTCACCTTTATGAGCa < 1:3063976/91‑1 (MQ=255) aaTACCAAGAGATACTGCTACAACAGTGTACAATGATACACCATTTCTCATGATTTTAGTAAATATTTTCGGCATTTCACCTTTATGAGCa < 1:1187166/91‑1 (MQ=255) tACCAAGAGATACTGCTACAACAGTGTACAATGGTACACCATTTCTCATGATTTTAGTAAATATTTTCGGCATTTCACCTTTATGAGCAAg > 1:2113993/1‑91 (MQ=255) agaTACTGCTACAACAGTGTACAATGGTACACCATTTCTCATGATTTTAGTAACTATTTTCGGCATTTCACCTTTATGAGCAAGTGTATaa < 1:3498808/91‑1 (MQ=255) aTACTGCTACAACAGTGTACAATGGTACACCATTTCTCATGATTTTAGTAAATATTTTCGGCATTTCACCTTTATGAGCAAGTGTATAAAt > 1:1385600/1‑91 (MQ=255) aCTGCTACAACAGTGTACAATGGTACACCATTTCTCATGATTTTAGTAAATATTTTCGGCATTTCACCTTTATGAGCAAGTGTATAAATCa < 1:3350655/91‑1 (MQ=255) aCTGCTACAACAGTGTACAATGGTACACCATTTCTCATGATTTTAGTAAATATTTTCGGCATTTCACCTTTATGAGCAAGTGTATAAATCa < 1:504039/91‑1 (MQ=255) aCTGCTACAACAGTGTACAATGGTACACCATTTCTCATGATTTTAGTAAATATTTTCGGCATTTCACCTTTATGAGCAAGTGTATAAATCa < 1:502905/91‑1 (MQ=255) cTGCTACAACAGTGTACAATGGTACACCATTTCTCATGATTTTAGTAAATATTTTCGGCATTTCACCTTTATGAGCAAGTGTATAAATCAt < 1:2736285/91‑1 (MQ=255) gCTACAACAGTGTACAATGGTACACCATTTCTCATGATTTTAGTAAATATTTTCGGCATTTCACCTTTATGAGCAAGTGTATAAATCATAc > 1:687739/1‑91 (MQ=255) gCTACAACAGTGTACAATGGTACACCATTTCTCATGATTTTAGTAAATATTTTCGGCATTTCACCTTTATGAGCAAGTGTATAAATCATAc > 1:270994/1‑91 (MQ=255) gCTACAACAGTGTACAATGGTACACCATTTCTCATGATTTTAGTAAATATTTTCGGCATTTCACCTTTATGAGCAAGTGTATAAATCATAc < 1:4074028/91‑1 (MQ=255) caacaGTGTACAATGGTACACCATTTCTCATGATTTTAGTAAATATTTTCGGCATTTCACCTTTATGAGCAAGTGTATAAATCATACGACt < 1:2757744/91‑1 (MQ=255) ggtgtACCATTGTACACCATTTCTCATGATTTTAGTAAATATTTTCGGCATTTCACCTTTATGAGCAAGTGTATAAATCATACGACTCGCa > 1:1449582/2‑91 (MQ=255) ggtgtACCATTGTACACCATTTCTCATGATTTTAGTAAATATTTTCGGCATTTCACCTTTATGAGCAAGTGTATAAATCATACGACTCGCa > 1:3380112/2‑91 (MQ=255) aGTGTACAATGGTACACCATTTCTCATGATTTTAGTAAATATTTTCGGCATTTCACCTTTATGAGCAAGTGTATAAATCATACGACTCGCa > 1:208410/1‑91 (MQ=255) gtgtACCATTGTACACCATTTCTCATGATTTTAGTAAATATTTTCGGCATTTCACCTTTATGAGCAAGTGTATAAATCATACGACTCGCAc > 1:1880733/1‑91 (MQ=255) gtgtACCATTGTACACCATTTCTCATGATTTTAGTAAATATTTTCGGCATTTCACCTTTATGAGCAAGTGTATAAATCATACGACTCGCAc > 1:1880810/1‑91 (MQ=255) gtgtACCATTGTACACCATTTCTCATGATTTTAGTAAATATTTTCGGCATTTCACCTTTATGAGCAAGTGTATAAATCATACGACTCGCAc > 1:1887136/1‑91 (MQ=255) gtgtACAATGGTACACCATTTCTCATGATTTTAGTAAATATTTTCGGCATTTCACCTTTATGAGCAAGTGTATAAATCATACGACTCGCAc < 1:2706257/91‑1 (MQ=255) gtgtACAATGGTACACCATTTCTCATGATTTTAGTAAATATTTTCGGCATTTCACCTTTATGAGCAAGTGTATAAATCATACGACTCGCAc < 1:2062863/91‑1 (MQ=255) tgtgcAATGGTACACCATTTCTCATGATTTTAGTAAATATTTTCGGCATTTCACCTTTATGAGCAAGTGTATAAATCATACGACTCGCACt > 1:54563/5‑91 (MQ=255) tgtACCATTGTACACCATTTCTCATGATTTTAGTAAATATTTTCGGCATTTCACCTTTATGAGCAAGTGTATAAATCATACGACTCGCACt > 1:3044062/1‑91 (MQ=255) gtACCATTGTACACCATTTCTCATGATTTTAGTAAATATTTTCGGCATTTCACCTTTATGAGCAAGTGTATAAATCATACGACTCGCACTg > 1:3114841/1‑91 (MQ=255) gtACAATGGTACACCATTTCTCATGATTTTAGTAAATATTTTCGGCATTTCACCTTTATGAGCAAGTGTATAAATCATACGACTCGCACTg < 1:1701856/91‑1 (MQ=255) aCAATGGTACACCATTTCTCATGATTTTAGTAAATATTTTCGGCATTTCACCTTTATGAGCAAGTGTATAAATCATACGACTCGCACTGaa < 1:3465687/91‑1 (MQ=255) aCAATGGTACACCATTTCTCATGATTTTAGTAAATATTTTCGGCATTTCACCTTTATGAGCAAGTGTATAAATCATACGACTCGCACTGaa > 1:237847/1‑91 (MQ=255) aCAATGGTACACCATTTCTCATGATTTTAGTAAATATTTTCGGCATTTCACCTTTATGAGCAAGTGTATAAATCATACGACTCGCACTGaa > 1:237904/1‑91 (MQ=255) aCAATGGTACACCATTTCTCATGATTTTAGTAAATATTTTCGGCATTTCACCTTTATGAGCAAGTGTATAAATCATACGACTCGCACTGaa > 1:2544874/1‑91 (MQ=255) aCAATGGTACACCATTTCTCATGATTTTAGTAAATATTTTCGGCATTTCACCTTTATGAGCAAGTGTATAAATCATACGACTCGCACTGaa > 1:3811143/1‑91 (MQ=255) aCAATGGTACACCATTTCTCATGATTTTAGTAAATATTTTCGGCATTTCACCTTTATGAGCAAGTGTATAAATCATACGACTCGCACTGaa < 1:3776541/91‑1 (MQ=255) aCAATGGTACACCATTTCTCATGATTTTAGTAAATATTTTCGGCATTTCACCTTTATGAGAAAGTGTATAAATCATACGACTCGCACTGaa < 1:1596305/91‑1 (MQ=255) cAATGGTACACCATTTCTCATGATTTTAGTAAATATTTTCGGCATTTCACCTTTATGAGCAAGTGTATAAATCATACGACTCGCACTGaaa > 1:2368259/1‑91 (MQ=255) aaTGGTACACCATTTCTCATGATTTTAGTAAATATTTTCGGCATTTCACCTTTATGAGCAAGTGTATAAATCATACGACTCGCACTGaaaa < 1:2913743/91‑1 (MQ=255) aaTGGTACACCATTTCTCATGATTTTAGTAAATATTTTCGGCATTTCACCTTTATGAGCAAGTGTATAAATCATACGACTCGCACTGaaaa > 1:697827/1‑91 (MQ=255) aaTGGTACACCATTTCTCATGATTTTAGTAAATATTTTCGGCATTTCACCTTTATGAGCAAGTGTATAAATCATACGACTCGCACTGaaaa > 1:697981/1‑91 (MQ=255) aaTGGTACACCATTTCTCATGATTTTAGTAAATATTTTCGGCATTTCACCTTTATGAGCAAGTGTATAAATCATACGACTCGCACTGaaaa > 1:699842/1‑91 (MQ=255) ggTACACCATTTCTCATGATTTTAGTAAATATTTTCGGCATTTCACCTTTATGAGCAAGTGTATAAATCATACGACTCGCACTGAAAATAc < 1:930985/91‑1 (MQ=255) ggTACACCATTTCTCATGATTTTAGTAAATATTTTCGGCATTTCACCTTTATGAGCAAGTGTATAAATCATACGACTCGCACTGAAAATAc < 1:3540156/91‑1 (MQ=255) | CTCTTCGCTCCATCGATATATAAAGGTAAAATTACGTTTAATAAAGCACCAATTAAAATACCAAGAGATACTGCTACAACAGTGTACAATGGTACACCATTTCTCATGATTTTAGTAAATATTTTCGGCATTTCACCTTTATGAGCAAGTGTATAAATCATACGACTCGCACTGAAAATAC > USA300TCH1516_ALE/2435420‑2435600 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |