| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | USA300TCH1516_ALE | 163,523 | A→T | 7.5% | intergenic (‑19/+195) | glnQ ← / ← phnD | Glutamine transport ATP‑binding protein GlnQ/Phosphate‑import protein PhnD |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | USA300TCH1516_ALE | 163,523 | 0 | A | T | 7.5% | 363.6 / 15.5 | 106 | intergenic (‑19/+195) | glnQ/phnD | Glutamine transport ATP‑binding protein GlnQ/Phosphate‑import protein PhnD |
| Reads supporting (aligned to +/- strand): ref base A (51/47); new base T (5/3); total (56/50) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 7.20e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.86e-01 | |||||||||||
Only 100 of 118 total aligned reads displayed.
GTTAATATTTTTCAAGCCTACATGACCGTTAGGATAGACTTTACTGACGTTTTTAAATTCGATTTGACTCATGTTTGACACCTTTCTTTAATAAAGAAAAGCCAAGGTAAACTGAAATATCATAGACATTGGGTTTCTGTGTACAAATGGTTTCAAATGTACAGCGACACCTTTCTATATC > USA300TCH1516_ALE/163433‑163613 | gTTAATATTTTTCAAGCCTACATGACCGTTAGGATAGACTTTACTGACGTTTTTAAATTCGATTTGACTCATGTTTGACACCTTTCTTtaa < 1:3201292/91‑1 (MQ=255)gTTAATATTTTTCAAGCCTACATGACCGTTAGGATAGACTTTACTGACGTTTTTAAATTCGATTTGACTCATGTTTGACACCTTTCTTtaa < 1:414617/91‑1 (MQ=255)gTTAATATTTTTCAAGCCTACATGACCGTTAGGATAGACTTTACTGACGTTTTTAAATTCGATTTGACTCATGTTTGACACCTTTCTTtaa > 1:797072/1‑91 (MQ=255) ttAATATTTTTCAAGCCTACATGACCGTTAGGATAGACTTTACTGACGTTTTTAAATTCGATTTGACTCATGTTTGACACCTTTCTTtaat < 1:528236/91‑1 (MQ=255) ttAATATTTTTCAAGCCTACATGACCGTTAGGATAGACTTTACTGACGTTTTTAAATTCGATTTGACTCATGTTTGACACCTTTCTTtaat < 1:2828593/91‑1 (MQ=255) tAATATTTTTCAAGCCTACATGACCGTTAGGATAGACTTTACTGACGTTTTTAAATTCGATTTGACTCATGTTTGACACCTTTCTTtaata > 1:2076108/1‑91 (MQ=255) tAATATTTTTCAAGCCTACATGACCGTTAGGATAGACTTTACTGACGTTTTTAAATTCGATTTGACTCATGTTTGACACCTTTCTTtaata > 1:3473236/1‑91 (MQ=255) atatTTTTCAAGCCTACATGACCGTTAGGATAGACTTTACTGACGTTTTTAAATTCGATTTGACTCATGTTTGACACCTTTCTTTATTaaa < 1:2015049/91‑1 (MQ=255) atatTTTTCAAGCCTACATGACCGTTAGGATAGACTTTACTGACGTTTTTAAATTCGATTTGACTCATGTTTGACACCTTTCTTTAATaaa > 1:3830178/1‑91 (MQ=255) atatTTTTCAAGCCTACATGACCGTTAGGATAGACTTTACTGACGTTTTTAAATTCGATTTGACTCATGTTTGACACCTTTCTTTAATaaa > 1:850608/1‑91 (MQ=255) atatTTTTCAAGCCTACATGACCGTTAGGATAGACTTTACTGACGTTTTTAAATTCGATTTGACTCATGTTTGACACCTTTCTTTAATaaa < 1:2971643/91‑1 (MQ=255) atatTTTTCAAGCCTACATGACCGTGAGGATAGACTTTACTGACGTTTTTAAATTCGATTTGACTCATGTTTGACACCTTTCTTTATTaaa < 1:2017921/91‑1 (MQ=255) tatTTTTCAAGCCTACATGACCGTTAGGATAGACTTTACTGACGTTTTTAAATTCGATTTGACTCATGTTTGACACCTTTCTTTAATAAAg < 1:86613/91‑1 (MQ=255) ttttCAAGCCTACATGACCGTTAGGATAGACTTTACTGACGTTTTTAAATTCGATTTGACTCATGTTTGACACCTTTCTTTAATAAAGaaa > 1:4064274/1‑91 (MQ=255) tttCAAGCCTACATGACCGTTAGGATAGACTTTACTGACGTTTTTAAATTCGATTTGACTCATGTTTGACACCTTTCTTTAATAAAGaaaa < 1:1927230/91‑1 (MQ=255) tCAAGCCTACATGACCGTTAGGATAGACTTTACTGACGTTTTTAAATTCGATTTGACTCATGTTTGACACCTTTCTTTAATAAAGAAAAGc < 1:789646/91‑1 (MQ=255) tCAAGCCTACATGACCGTTAGGATAGACTTTACTGACGTTTTTAAATTCGATTTGACTCATGTTTGACACCTTTCTTTAATAAAGAAAAGc < 1:1849053/91‑1 (MQ=255) cAAGCCTACATGACCGTTAGGATAGACTTTACTGACGTTTTTAAATTCGATTTGACTCATGTTTGACACCTTTCTTTAATAAAGAAAAGcc < 1:2506981/91‑1 (MQ=255) cAAGCCTACATGACCGTTAGGATAGACTTTACTGACGTTTTTAAATTCGATTTGACTCATGTTTGACACCTTTCTTTAATAAAGAAAAGcc < 1:2506713/91‑1 (MQ=255) aaGCCTACATGACCGTTAGGATAGACTTTACTGACGTTTTTAAATTCGATTTGACTCATGTTTGACACCTTTCTTTAATAAAGAAAAGCCa < 1:2386236/91‑1 (MQ=255) aGCCTACATGACCGTTAGGATAGACTTTACTGACGTTTTTAAATTCGATTTGACTCATGTTTGACACCTTTCTTTAATAAAGAAAAGCCaa < 1:451663/91‑1 (MQ=255) aGCCTACATGACCGTTAGGATAGACTTTACTGACGTTTTTAAATTCGATTTGACTCATGTTTGACACCTTTCTTTAATAAAGAAAAGCCaa > 1:520629/1‑91 (MQ=255) gCCTACATGACCGTTAGGATAGACTTTACTGACGTTTTTAAATTCGATTTGACTCATGTTTGACACCTTTCTTTAATAAAGAAAAGCCAAg > 1:2627996/1‑91 (MQ=255) ccTACATGACCGTTAGGATAGACTTTACTGACGTTTTTAAATTCGATTTGACTCATGTTTGACACCTTTCTTTAATAAAGAAAAGCCAAgg < 1:2801635/91‑1 (MQ=255) cTACATGACCGTTAGGATAGACTTTACTGACGTTTTTAAATTCGATTTGACTCATGTTTGACACCTTTCTTTAATAAAGAAAAGCCAAGGt < 1:3058886/91‑1 (MQ=255) aCATGACCGTTAGGATAGACTTTACTGACGTTTTTAAATTCGATTTGACTCATGTTTGACACCTTTCTTTAATAAAGAAAAGCCAAGGTaa > 1:4120540/1‑91 (MQ=255) aTGACCGTTAGGATAGACTTTACTGACGTTTTTAAATTCGATTTGACTCATGTTTGACACCTTTCTTTAATAAAGAAAAGCCAAGGTAAAc < 1:514878/91‑1 (MQ=255) aTGACCGTTAGGATAGACTTTACTGACGTTTTTAAATTCGATTTGACTCATGTTTGACACCTTTCTTTAATAAAGAAAAGCCAAGGTAAAc < 1:1705304/91‑1 (MQ=255) tGACCGTTAGGATAGACTTTACTGACGTTTTTAAATTCGATTTGACTCATGTTTGACACCTTTCTTTAATAAAGAAAAGCCAAGGTAAACt > 1:3833488/1‑91 (MQ=255) aCCGTTAGGATAGACTTTACTGACGTTTTTAAATTCGATTTGACTCATGTTTGACACCTTTCTTTAATAAAGAAAAGCCAAGGTAAACTGa < 1:2253186/91‑1 (MQ=255) aCCGTTAGGATAGACTTTACTGACGTTTTTAAATTCGATTTGACTCATGTTTGACACCTTTCTTTAATAAAGAAAAGCCAAGGTAAACTGa > 1:2052430/1‑91 (MQ=255) aCCGTTAGGATAGACTTTACTGACGTTTTTAAATTCGATTTGACTCATGTTTGACACCTTTCTTTAATAAAGAAAAGCCAAGGTAAACTGa > 1:4143912/1‑91 (MQ=255) aCCGTTAGGATAGACTTTACTGACGTTTTTAAATTCGATTTGACTCATGTTTGACACCTTTCTTTAATAAAGAAAAGCCAAGGTAAACTGa > 1:362575/1‑91 (MQ=255) aCCGTTAGGATAGACTTTACTGACGTTTTTAAATTCGATTTGACTCATGTTTGACACCTTTCTTTAATAAAGAAAAGCCAAGGTAAACTGa < 1:1316990/91‑1 (MQ=255) cGTTAGGATAGACTTTACTGACGTTTTTAAATTCGATTTGACTCATGTTTGACACCTTTCTTTAATAAAGAAAAGCCAAGGTAAACTGaaa < 1:138596/91‑1 (MQ=255) gTTAGGATAGACTTTACTGACGTTTTTAAATTCGATTTGACTCATGTTTGACACCTTTCTTTAATAAAGAAAAGCCAAGGTAAACTGAAat > 1:3455231/1‑91 (MQ=255) gTTAGGATAGACTTTACTGACGTTTTTAAATTCGATTTGACTCATGTTTGACACCTTTCTTTAATAAAGAAAAGCCAAGGTAAACTGAAat > 1:3454539/1‑91 (MQ=255) aGGATAGACTTTACTGACGTTTTTAAATTCGATTTGACTCATGTTTGACACCTTTCTTTAATAAAGAAAAGCCAAGGTAAACTGAAATATc > 1:4132409/1‑91 (MQ=255) aGGATAGACTTTACTGACGTTTTTAAATTCGATTTGACTCATGTTTGACACCTTTCTTTAATAAAGAAAAGCCAAGGTAAACTGAAATATc > 1:4132175/1‑91 (MQ=255) aGGATAGACTTTACTGACGTTTTTAAATTCGATTTGACTCATGTTTGACACCTTTCTTTAATAAAGAAAAGCCAAGGTAAACTGAAATATc > 1:3631462/1‑91 (MQ=255) ggATAGACTTTACTGACGTTTTTAAATTCGATTTGACTCATGTTTGACACCTTTCTTTAATAAAGAAAAGCCAAGGTAAACTGAAATATCa < 1:2632698/91‑1 (MQ=255) gATAGACTTTACTGACGTTTTTAAATTCGATTTGACTCATGTTTGACACCTTTCTTTAATAAAGAAAAGCCAAGGTAAACTGAAATATCAt > 1:2964748/1‑91 (MQ=255) aTAGACTTTACTGACGTTTTTAAATTCGATTTGACTCATGTTTGACACCTTTCTTTAATAAAGAAAAGCCAAGGTAAACTGAAATATCATa < 1:1623795/91‑1 (MQ=255) aTAGACTTTACTGACGTTTTTAAATTCGATTTGACTCATGTTTGACACCTTTCTTTAATAAAGAAAAGCCAAGGTAAACTGAAATATCATa > 1:1113743/1‑91 (MQ=255) aGACTTTACTGACGTTTTTAAATTCGATTTGACTCATGTTTGACACCTTTCTTTAATAAAGAAAAGCCAAGGTAAACTGAAATATCATAGa > 1:1519758/1‑91 (MQ=255) aGACTTTACTGACGTTTTTAAATTCGATTTGACTCATGTTTGACACCTTTCTTTAATAAAGAAAAGCCAAGGTAAACTGAAATATCATAGa > 1:26633/1‑91 (MQ=255) gACTTTACTGACGTTTTTAAATTCGATTTGACTCATGTTTGACACCTTTCTTTAATAAAGAAAAGCCAAGGTAAACTGAAATATCATAGAc > 1:566705/1‑91 (MQ=255) ttACTGACGTTTTTAAATTCGATTTGACTCATGTTTGACACCTTTCTTTAATAAAGAAAAGCCAAGGTAAACTGAAATATCATAGACATTg < 1:3750251/91‑1 (MQ=255) ttACTGACGTTTTTAAATTCGATTTGACTCATGTTTGACACCTTTCTTTAATAAAGAAAAGCCAAGGTAAACTGAAATATCATAGACATTg < 1:3708389/91‑1 (MQ=255) aCTGACGTTTTTAAATTCGATTTGACTCATGTTTGACACCTTTCTTTAATAAAGAAAAGCCAAGGTAAACTGAAATATCATAGACATTggg < 1:2720236/91‑1 (MQ=255) cTGACGTTTTTAAATTCGATTTGACTCATGTTTGACACCTTTCTTTCATAAAGAAAAGCCAAGGTAAACTGAAATATCATAGACATTGGGt > 1:3294849/1‑91 (MQ=255) tGACGTTTTTAAATTCGATTTGACTCATGTTTGACACCTTTCTTTAATAAAGAAAAGCCAAGGTAAACTGAAATATCATAGACATTGGGtt > 1:2801772/1‑91 (MQ=255) tGACGTTTTTAAATTCGATTTGACTCATGTTTGACACCTTTCTTTAATAAAGAAAAGCCAAGGTAAACTGAAATATCATAGACATTGGGtt > 1:2801694/1‑91 (MQ=255) tGACGTTTTTAAATTCGATTTGACTCATGTTTGACACCTTTCTTTAATAAAGAAAAGCCAAGGTAAACTGAAATATCATAGACATTGGGtt > 1:1127770/1‑91 (MQ=255) aCGTTTTTAAATTCGATTTGACTCATGTTTGACACCTTTCTTTAATAAAGAAAAGCCAAGGTAAACTGAAATATCATAGACATTGGGTTTc > 1:772210/1‑91 (MQ=255) aCGTTTTTAAATTCGATTTGACTCATGTTTGACACCTTTCTTTAATAAAGAAAAGCCAAGGTAAACTGAAATATCATAGACATTGGGTTTc > 1:1334005/1‑91 (MQ=255) aCGTTTTTAAATTCGATTTGACTCATGTTTGACACCTTTCTTTAATAAAGAAAAGCCAAGGTAAACTGAAATATCATAGACATTGGGTTTc < 1:2808755/91‑1 (MQ=255) tttttAAATTCGATTTGACTCATGTTTGACACCTTTCTTTAATAAAGAAAAGCCAAGGTAAACTGAAATATCATAGACATTGGGTTTCtgt < 1:2797034/91‑1 (MQ=255) tttAAATTCGATTTGACTCATGTTTGACACCTTTCTTTAATAAAGAAAAGCCAAGGTAAACTGAAATATCATAGACATTGGGTTTCTgtgt > 1:2633540/1‑91 (MQ=255) aaaTTCGATTTGACTCATGTTTGACACCTTTCTTTAATAAAGAAAAGCCAAGGTAAACTGAAATATCATAGACATTGGGTTTCTGTGTACa < 1:1612945/91‑1 (MQ=255) aaaTTCGATTTGACTCATGTTTGACACCTTTCTTTAATAAAGAAAAGCCAAGGTAAACTGAAATATCATAGACATTGGGTTTCTGTGTACa > 1:1025056/1‑91 (MQ=255) aaTTCGATTTGACTCATGTTTGACACCTTTCTTTAATAAAGAAAAGCCAAGGTAAACTGAAATATCATAGACATTGGGTTTCTGTGTACaa > 1:332899/1‑91 (MQ=255) aTTCGATTTGACTCATGTTTGACACCTTTCTTTAATAAAGAAAAGCCAAGGTAAACTGAAATATCATAGACATTGGGTTTCTGTGTACaaa > 1:1673459/1‑91 (MQ=255) aTTCGATTTGACTCATGTTTGACACCTTTCTTTAATAAAGAAAAGCCAAGGTAAACTGAAATATCATAGACATTGGGTTTCTGTGTACaaa > 1:1673905/1‑91 (MQ=255) ttCGATTTGACTCATGTTTGACACCTTTCTTTAATAAAGAAAAGCCAAGGTAAACTGAAATATCATAGACATTGGGTTTCTGTGTACAAAt > 1:3585245/1‑91 (MQ=255) ttCGATTTGACTCATGTTTGACACCTTTCTTTAATAAAGAAAAGCCAAGGTAAACTGAAATATCATAGACATTGGGTTTCTGTGTACAAAt > 1:3585417/1‑91 (MQ=255) tCGATTTGACTCATGTTTGACACCTTTCTTTAATAAAGAAAAGCCAAGGTAAACTGAAATATCATAGACATTGGGTTTCTGTGTACAAATg < 1:54087/91‑1 (MQ=255) tCGATTTGACTCATGTTTGACACCTTTCTTTAATAAAGAAAAGCCAAGGTAAACTGAAATATCATAGACATTGGGTTTCTGTGTACAAATg < 1:53881/91‑1 (MQ=255) cGATTTGACTCATGTTTGACACCTTTCTTTAATAAAGAAAAGCCAAGGTAAACTGAAATATCATAGACATTGGGTTTCTGTGTACAAATgg < 1:2461101/91‑1 (MQ=255) aTTTGACTCATGTTTGACACCTTTCTTTAATAAAGAAAAGCCAAGGTAAACTGAAATATCATAGACATTGGGTTTCTGTGTACAAATGGtt < 1:600258/91‑1 (MQ=255) tGACTCATGTTTGACACCTTTCTTTAATAAAGAAAAGCCAAGGTAAACTGAAATATCATAGACATTGGGTTTCTGTGTACAAATGGTTTCa < 1:1097015/91‑1 (MQ=255) tGACTCATGTTTGACACCTTTCTTTAATAAAGAAAAGCCAAGGTAAACTGAAATATCATAGACATTGGGTTTCTGTGTACAAATGGTTTCa < 1:2481096/91‑1 (MQ=255) gACTCATGTTTGACACCTTTCTTTAATAAAGAAAAGCCAAGGTAAACTGAAATATCATAGACATTGGGTTTCTGTGTACAAATGGTTTCaa < 1:3845266/91‑1 (MQ=255) gACTCATGTTTGACACCTTTCTTTAATAAAGAAAAGCCAAGGTAAACTGAAATATCATAGACATTGGGTTTCTGTGTACAAATGGTTTCaa < 1:967303/91‑1 (MQ=255) gACTCATGTTTGACACCTTTCTTTAATAAAGAAAAGCCAAGGTAAACTGAAATATCATAGACATTGGGTTTCTGTGTACAAATGGTTTCaa < 1:1385917/91‑1 (MQ=255) gACTCATGTTTGACACCTTTCTTTAATAAAGAAAAGCCAAGGTAAACCGAAATATCATAGACATTGGGTTTCTGTGTACAAATGGTTTCaa > 1:4137475/1‑91 (MQ=255) tGTTTGACACCTTTCTTTAATAAAGAAAAGCCAAGGTAAACTGAAATATCATAGACATTGGGTTTCTGTGTACAAATGGTTTCAAATGTAc > 1:1074327/1‑91 (MQ=255) tGTTTGACACCTTTCTTTAATAAAGAAAAGCCAAGGTAAACTGAAATATCATAGACATTGGGTTTCTGTGTACAAATGGTTTCAAATGTAc > 1:1074421/1‑91 (MQ=255) tGACACCTTTCTTTAATAAAGAAAAGCCAAGGTAAACTGAAATATCATAGACATTGGGTTTCTGTGTACAAATGGTTTCAAATGTACAGCg > 1:3556982/1‑91 (MQ=255) gACACCTTTCTTTAATAAAGAAAAGCCAAGGTAAACTGAAATATCATAGACATTGGGTTTCTGTGTACAAATGGTTTCAAATGTACAGCGa < 1:2355299/91‑1 (MQ=255) acCTTTCTTTAATAAAGAAAAGCCAAGGTAAACTGAAATATCATAGACATTGGGTTTCTGTGTACAAATGGTTTCAAATGTACAGCGacac < 1:1761662/91‑1 (MQ=255) acCTTTCTTTAATAAAGAAAAGCCAAGGTAAACTGAAATATCATAGACATTGGGTTTCTGTGTACAAATGGTTTCAAATGTACAGCGacac > 1:564487/1‑91 (MQ=255) acCTTTCTTTAATAAAGAAAAGCCAAGGTAAACTGAAATATCATAGACATTGGGTTTCTGTGTACAAATGGTTTCAAATGTACAGCGacac < 1:1821800/91‑1 (MQ=255) ccTTTCTTTAATAAAGAAAAGCCAAGGTAAACTGAAATATCATAGACATTGGGTTTCTGTGTACAAATGGTTTCAAATGTACAGCGACAcc < 1:3818326/91‑1 (MQ=255) ctttctttAATAAAGAAAAGCCAAGGTAAACTGAAATATCATAGACATTGGGTTTCTGTGTACAAATGGTTTCAAATGTACAGCGACACCt > 1:2509865/1‑91 (MQ=255) ctttctttAATAAAGAAAAGCCAAGGTAAACTGAAATATCATAGACATTGGGTTTCTGTGTACAAATGGTTTCAAATGTACAGCGACACCt > 1:3712062/1‑91 (MQ=255) tttctttAATAAAGAAAAGCCAAGGTAAACTGAAATATCATAGACATTGGGTTTCTGTGTACAAATGGTTTCAAATGTACAGCGACACCtt > 1:3197244/1‑91 (MQ=255) tttctttAATAAAGAAAAGCCAAGGTAAACTGAAATATCATAGACATTGGGTTTCTGTGTACAAATGGTTTCAAATGTACAGCGACACCtt > 1:3198488/1‑91 (MQ=255) tctttAATAAAGAAAAGCCAAGGTAAACTGAAATATCATAGACATTGGGTTTCTGTGTACAAATGGTTTCAAATGTACAGCGACACCTTTc < 1:558679/91‑1 (MQ=255) tctttAATAAAGAAAAGCCAAGGTAAACTGAAATATCATAGACATTGGGTTTCTGTGTACAAATGGTTTCAAATGTACAGCGACACCTTTc < 1:1377521/91‑1 (MQ=255) ctttATTAAAGAAAAGCCAAGGTAAACTGAAATATCATAGACATTGGGTTTCTGTGTACAAATGGTTTCAAATGTACAGCGACACCTTTCt > 1:601678/1‑91 (MQ=255) ctttATTAAAGAAAAGCCAAGGTAAACTGAAATATCATAGACATTGGGTTTCTGTGTACAAATGGTTTCAAATGTACAGCGACACCTTTCt > 1:1368668/1‑91 (MQ=255) ctttATTAAAGAAAAGCCAAGGTAAACTGAAATATCATAGACATTGGGTTTCTGTGTACAAATGGTTTCAAATGTACAGCGACACCTTTCt > 1:1368395/1‑91 (MQ=255) ctttATTAAAGAAAAGCCAAGGTAAACTGAAATATCATAGACATTGGGTTTCTGTGTACAAATGGTTTCAAATGTACAGCGACACCTTTCt > 1:1368364/1‑91 (MQ=255) tttATTAAAGAAAAGCCAAGGTAAACTGAAATATCATAGACATTGGGTTTCTGTGTACAAATGGTTTCAAATGTACAGCGACACCTTTCta > 1:1863907/1‑91 (MQ=255) ttAATAAAGAAAAGCCAAGGTAAACTGAAATATCATAGACATTGGGTTTCTGTGTACAAATGGTTTCAAATGTACAGCGACACCTTTCtat > 1:1501624/1‑91 (MQ=255) ttAATAAAGAAAAGCCAAGGTAAACTGAAATATCATAGACATTGGGTTTCTGTGTACAAATGGTTTCAAATGTACAGCGACACCTTTCtat > 1:1499599/1‑91 (MQ=255) ataaAGAAAAGCCAAGGTAAACTGAAATATCATAGACATTGGGTTTCTGTGTACAAATGGTTTCAAATGTACAGCGACACCTTTCTATATc > 1:3575409/1‑91 (MQ=255) ataaAGAAAAGCCAAGGTAAACTGAAATATCATAGACATTGGGTTTCTGTGTACAAATGGTTTCAAATGTACAGCGACACCTTTCTATATc < 1:3702515/91‑1 (MQ=255) ataaAGAAAAGCCAAGGTAAACTGAAATATCATAGACATTGGGTTTCTGTGTACAAATGGTTTCAAATGTACAGCGACACCTTTCTATATc < 1:467043/91‑1 (MQ=255) | GTTAATATTTTTCAAGCCTACATGACCGTTAGGATAGACTTTACTGACGTTTTTAAATTCGATTTGACTCATGTTTGACACCTTTCTTTAATAAAGAAAAGCCAAGGTAAACTGAAATATCATAGACATTGGGTTTCTGTGTACAAATGGTTTCAAATGTACAGCGACACCTTTCTATATC > USA300TCH1516_ALE/163433‑163613 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |