| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | USA300TCH1516_ALE | 581,901 | G→C | 10.8% | V13L (GTG→CTG) | nusG_2 → | Transcription termination/antitermination protein NusG |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | USA300TCH1516_ALE | 581,901 | 0 | G | C | 10.8% | 329.9 / 25.4 | 102 | V13L (GTG→CTG) | nusG_2 | Transcription termination/antitermination protein NusG |
| Reads supporting (aligned to +/- strand): ref base G (39/52); new base C (8/3); total (47/55) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.06e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.42e-01 | |||||||||||
Only 100 of 105 total aligned reads displayed.
GATTTAGGAATTACAGCATTGAAAAATTTATTATTTCGTTAGAGGAGTGAAGACATGTCTGAAGAAGTTGGCGCAAAGCGTTGGTATGCAGTGCATACATATTCTGGATATGAAAATAAAGTTAAAAAGAATTTAGAAAAAAGAGTAGAATCTATGAATATGACTGAACAAATCTTTAGAG > USA300TCH1516_ALE/581811‑581991 | gATTTAGGAATTACAGCATTGAAAAATTTATTATTTCGTTAGAGGAGTGAAGACATGTCTGAAGAAGTTGGCGCAAAGCGTTGGTATGCAg > 1:2096348/1‑91 (MQ=255) ttAGGAATTACAGCATTGAAAAATTTATTATTTCGTTAGAGGAGTGAAGACATGTCTGAAGAAGTTGGCGCAAAGCGTTGGTATGCACTGc < 1:3823102/91‑1 (MQ=255) ttAGGAATTACAGCATTGAAAAATTTATTATTTCGTTAGAGGAGTGAAGACATGTCTGAAGAAGTTGGCGCAAAGCGTTGGTATGCACTGc < 1:2029596/91‑1 (MQ=255) ttAGGAATTACAGCATTGAAAAATTTATTATTTCGTTAGAGGAGTGAAGACATGTCTGAAGAAGTTGGCGCAAAGCGTTGGTATGCACTGc < 1:2031159/91‑1 (MQ=255) atgAATTACAGCATTGAAAAATTTATTATTTCGTTAGAGGAGTGAAGACATGTCTGAAGAAGTTGGCGCAAAGCGTTGGTATGCAGTGcat < 1:2800990/89‑1 (MQ=255) ggAATTACAGCATTGAAAAATTTATTATTTCGTTAGAGGAGTGAAGACATGTCTGAAGAAGTTGGCGCAAAGCGTTGGTATGCAGTGcata > 1:852551/1‑91 (MQ=255) gAATTACAGCATTGAAAAATTTATTATTTCGTTAGAGGAGTGAAGACATGTCTGAAGAAGTTGGCGCAAAGCGTTGGTATGCAGTGcatac < 1:266367/91‑1 (MQ=255) aaTTACAGCATTGAAAAATTTATTATTTCGTTAGAGGAGTGAAGACATGTCTGAAGAAGTTGGCGCAAAGCGTTGGTATGCAGTGcataca < 1:2540655/91‑1 (MQ=255) ttACAGCATTGAAAAATTTATTATTTCGTTAGAGGAGTGAAGACATGTCTGAAGAAGTTGGCGCAAAGCGTTGGTATGCAGTGcatacata < 1:1880770/91‑1 (MQ=255) tACAGCATTGAAAAATTTATTATTTCGTTAGAGGAGTGAAGACATGTCTGAAGAAGTTGGCGCAAAGCGTTGGTATGCAGTGCATACatat < 1:1364047/91‑1 (MQ=255) tACAGCATTGAAAAATTTATTATTTCGTTAGAGGAGTGAAGACATGTCTGAAGAAGTTGGCGCAAAGCGTTGGTATGCAGTGCATACatat < 1:2122259/91‑1 (MQ=255) aGCATTGAAAAATTTATTATTTCGTTAGAGGAGTGAAGACATGTCTGAAGAAGTTGGCGCAAAGCGTTGGTATGCAGTGCATACATATTCt > 1:603948/1‑91 (MQ=255) gCATTGAAAAATTTATTATTTCGTTAGAGGAGTGAAGACATGTCTGAAGAAGTTGGCGCAAAGCGTTGGTATGCAGTGCATACATATTCTg < 1:2991286/91‑1 (MQ=255) ttGAAAAATTTATTATTTCGTTAGAGGAGTGAAGACATGTCTGAAGAAGTTGGCGCAAAGCGTTGGTATGCAGTGCATACATATTCTGGat < 1:1246121/91‑1 (MQ=255) aaTTTATTATTTCGTTAGAGGAGTGAAGACATGTCTGAAGAAGTTGGCGCAAAGCGTTGATATGCAGTGCATACATATTCTGGATATGaaa < 1:1215518/91‑1 (MQ=255) aTTTATTATTTCGTTAGAGGAGTGAAGACATGTCTGAAGAAGTTGGCGCAAAGCGTTGGTATGCAGTGCATACATATTCTGGATATGaaaa < 1:3139269/91‑1 (MQ=255) aTTTATTATTTCGTTAGAGGAGTGAAGACATGTCTGAAGAAGTTGGCGCAAAGCGTTGGTATGCAGTGCATACATATTCTGGATATGaaaa < 1:1454170/91‑1 (MQ=255) tttATTATTTCGTTAGAGGAGTGAAGACATGTCTGAAGAAGTTGGCGCAAAGCGTTGGTATGCAGTGCATACATATTCTGGATATGAAAAt < 1:4127713/91‑1 (MQ=255) tattatTTCGTTAGAGGAGTGAAGACATGTCTGAAGAAGTTGGCGCAAAGCGTTGGTATGCAGTGCATACATATTCTGGATATGAAAATaa > 1:2861650/1‑91 (MQ=255) tattatTTCGTTAGAGGAGTGAAGACATGTCTGAAGAAGTTGGCGCAAAGCGTTGGTATGCAGTGCATACATATTCTGGATATGAAAATaa < 1:1113417/91‑1 (MQ=255) tattatTTCGTTAGAGGAGTGAAGACATGTCTGAAGAAGTTGGCGCAAAGCGTTGGTATGCAGTGCATACATATTCTGGATATGAAAATaa < 1:1336443/91‑1 (MQ=255) attattTCGTTAGAGGAGTGAAGACATGTCTGAAGAAGTTGGCGCAAAGCGTTGGTATGCAGTGCATACATATTCTGGATATGAAAATaaa < 1:3625277/91‑1 (MQ=255) ttattTCGTTAGAGGAGTGAAGACATGTCTGAAGAAGTTGGCGCAAAGCGTTGGTATGCAGTGCATACATATTCTGGATATGAAAATAAAg < 1:3122798/91‑1 (MQ=255) ttattTCGTTAGAGGAGTGAAGACATGTCTGAAGAAGTTGGCGCAAAGCGTTGGTATGCAGTGCATACATATTCTGGATATGAAAATAAAg > 1:2034716/1‑91 (MQ=255) tattTCGTTAGAGGAGTGAAGACATGTCTGAAGAAGTTGGCGCAAAGCGTTGGTATGCAGTGCATACATATTCTGGATATGAAAATAAAGt < 1:338524/91‑1 (MQ=255) attTCGTTAGAGGAGTGAAGACATGTCTGAAGAAGTTGGCGCAAAGCGTTGGTATGCAGTGCATACATATTCTGGATATGAAAATAAAGtt > 1:1156886/1‑91 (MQ=255) tttCGTTAGAGGAGTGAAGACATGTCTGAAGAAGTTGGCGCAAAGCGTTGGTATGCAGTGCATACATATTCTGGATATGAAAATAAAGTTa > 1:1032502/1‑91 (MQ=255) tCGTTAGAGGAGTGAAGACATGTCTGAAGAAGTTGGCGCAAAGCGTTGGCATGCAGTGCATACATATTCTGGATATGAAAATAAAGTTaaa < 1:3592923/91‑1 (MQ=255) cGTTAGAGGAGTGAAGACATGTCTGAGGAAGTTGGCGCAAAGCGTTGGTATGCAGTGCATACATATTCTGGATATGAAAATAAAGTTaaaa < 1:2681811/91‑1 (MQ=255) ttAGAGGAGTGAAGACATGTCTGAAGAAGTTGGCGCAAAGCGTTGGTATGCAGTGCATACATATTCTGGATATGAAAATAAAGTTAAAAAg < 1:3892091/91‑1 (MQ=255) aggagTGAAGACATGTCTGAAGAAGTTGGCGCAAAGCGTTGGTATGCAGTGCATACATATTCTGGATATGAAAATAAAGTTAAAAAGAAtt < 1:3472432/91‑1 (MQ=255) aggagTGAAGACATGTCTGAAGAAGTTGGCGCAAAGCGTTGGTATGCAGTGCATACATATTCTGGATATGAAAATAAAGTTAAAAAGAAtt > 1:2873753/1‑91 (MQ=255) aggagTGAAGACATGTCTGAAGAAGTTGGCGCAAAGCGTTGGTATGCAGTGCATACATATTCTGGATATGAAAATAAAGTTAAAAAGAAtt > 1:2874181/1‑91 (MQ=255) aggagTGAAGACATGTCTGAAGAAGTTGGCGCAAAGCGTTGGTATGCAGTGCATACATATTCTGGATATGAAAATAAAGTTAAAAAGAAtt > 1:1660194/1‑91 (MQ=255) aggagTGAAGACATGTCTGAAGAAGTTGGCGCAAAGCGTTGGTATGCAGTGCATACATATTCTGGATATGAAAATAAAGTTAAAAAGAAtt < 1:318193/91‑1 (MQ=255) aggagTGAAGACATGTCTGAAGAAGTTGGCGCAAAGCGTTGGTATGCAGTGCATACATATTCTGGATATGAAAATAAAGTTAAAAAGAAtt < 1:1385256/91‑1 (MQ=255) gTGAAGACATGTCTGAAGAAGTTGGCGCAAAGCGTTGGTATGCAGTGCATACATATTCTGGATATGAAAATAAAGTTAAAAAGAATTTAGa < 1:2238288/91‑1 (MQ=255) aaGACATGTCTGAAGAAGTTGGCGCAAAGCGTTGGTATGCAGTGCATACATATTCTGGATATGAAAATAAAGTTAAAAAGAATTTAGaaaa > 1:70906/1‑91 (MQ=255) aaGACATGTCTGAAGAAGTTGGCGCAAAGCGTTGGTATGCAGTGCATACATATTCTGGATATGAAAATAAAGTTAAAAAGAATTTAGaaaa < 1:2686257/91‑1 (MQ=255) aaGACATGTCTGAAGAAGTTGGCGCAAAGCGTTGGTATGCAGTGCATACATATTCTGGATATGAAAATAAAGTTAAAAAGAATTTAGaaaa < 1:1823668/91‑1 (MQ=255) gACATGTCTGAAGAAGTTGGCGCAAAGCGTTGGTATGCAGTGCATACATATTCTGGATATGAAAATAAAGTTAAAAAGAATTTAGaaaaaa > 1:2923035/1‑91 (MQ=255) aCATGTCTGAAGAAGTTGGCGCAAAGCGTTGGTATGCAGTGCATACATATTCTGGATATGAAAATAAAGTTAAAAAGAATTTAGAAAAAag < 1:1752064/91‑1 (MQ=255) cATGTCTGAAGAAGTTGGCGCAAAGCGTTGGTATGCAGTGCATACATATTCTGGATATGAAAATAAAGTTAAAAAGAATTTAGAAAAAaga > 1:2136541/1‑91 (MQ=255) cATGTCTGAAGAAGTTGGCGCAAAGCGTTGGTATGCAGTGCATACATATTCTGGATATGAAAATAAAGTTAAAAAGAATTTAGAAAAAaga > 1:1492314/1‑91 (MQ=255) cATGTCTGAAGAAGTTGGCGCAAAGCGTTGGTATGCAGTGCATACATATTCTGGATATGAAAATAAAGTTAAAAAGAATTTAGAAAAAaga > 1:436781/1‑91 (MQ=255) cATGTCTGAAGAAGTTGGCGCAAAGCGTTGGTATGCAGTGCATACATATTCTGGATATGAAAATAAAGTTAAAAAGAATTTAGAAAAAaga > 1:255006/1‑91 (MQ=255) cATGTCTGAAGAAGTTGGCGCAAAGCGTTGGTATGCAGTGCATACATATTCTGGATATGAAAATAAAGTTAAAAAGAATTTAGAAAAAaga < 1:2062546/91‑1 (MQ=255) aTGTCTGAAGAAGTTGGCGCAAAGCGTTGGTATGCAGTGCATACATATTCTGGATATGAAAATAAAGTTAAAAAGAATTTAGAAAAAagag < 1:3785837/91‑1 (MQ=255) aTGTCTGAAGAAGTTGGCGCAAAGCGTTGGTATGCAGTGCATACATATTCTGGATATGAAAATAAAGTTAAAAAGAATTTAGAAAAAagag < 1:1762119/91‑1 (MQ=255) tGTCTGATGAAGTTGGCGCAAAGCGTTGGTATGCAGTGCATACATATTCTGGATATGAAAATAAAGTTAAAAAGAATTTAGAAAAAAGAGt < 1:2071046/91‑1 (MQ=255) tGTCTGAGGAAGTTGGCGCAAAGCGTTGGTATGCAGTGCATACATATTCTGGATATGAAAATAAAGTTAAAAAGAATTTAGAAAAAAGAGt < 1:3824851/91‑1 (MQ=255) tGTCTGAAGAAGTTGGCGCAAAGCGTTGGTATGCAGTGCATACATATTCTGGATATGAAAATAAAGTTAAAAAGAATTTAGAAAAAAGAGt > 1:4050684/1‑91 (MQ=255) gTCTGAAGAAGTTGGCGCAAAGCGTTGGTATGCAGTGCATACATATTCTGGATATGAAAATAAAGTTAAAAAGAATTTAGAAAAAAGAGTa > 1:1048452/1‑91 (MQ=255) tCTGAAGAAGTTGGCGCAAAGCGTTGGTATGCAGTGCATACATATTCTGGATATGAAAATAAAGTTAAAAAGAATTTAGAAAAAAGAGTAg < 1:1975688/91‑1 (MQ=255) cTGAAGAAGTTGGCGCAAAGCGTTGGTATGCAGTGCATACATATTCTGGATATGAAAATAAAGTTAAAAAGAATTTAGAAAAAAGAGTAGa < 1:892170/91‑1 (MQ=255) cTGAAGAAGTTGGCGCAAAGCGTTGGTATGCAGTGCATACATATTCTGGATATGAAAATAAAGTTAAAAAGAATTTAGAAAAAAGAGTAGa > 1:2031773/1‑91 (MQ=255) ctaagTTGGCGCAAAGCGTTGGTATGCAGTGCATACATATTCTGGATATGAAAATAAAGTTAAAAAGAATTTAGAAAAAAGAGTAGAATCt > 1:485215/3‑91 (MQ=255) agTTGGCGCAAAGCGTTGGTATGCAGTGCATACATATTCTGGATATGAAAATAAAGTTAAAAAGAATTTAGAAAAAAGAGTAGAATCTATg > 1:545981/1‑91 (MQ=255) agTTGGCGCAAAGCGTTGGTATGCAGTGCATACATATTCTGGATATGAAAATAAAGTTAAAAAGAATTTAGAAAAAAGAGTAGAATCTATg < 1:3154370/91‑1 (MQ=255) agTTGGCGCAAAGCGTTGGTATGCAGTGCATACATATTCTGGATATGAAAATAAAGTTAAAAAGAATTTAGAAAAAAGAGTAGAATCTATg > 1:2260319/1‑91 (MQ=255) gTTGGCGCAAAGCGTTGGTATGCAGTGCATACATATTCTGGATATGAAAATAAAGTTAAAAAGAATTTAGAAAAAAGAGTAGAATCTATGa > 1:3939883/1‑91 (MQ=255) tGGCGCAAAGCGTTGGTATGCAGTGCATACATATTCTGGATATGAAAATAAAGTTAAAAAGAATTTAGAAAAAAGAGTAGAATCTATGAat > 1:3735540/1‑91 (MQ=255) tGGCGCAAAGCGTTGGTATGCAGTGCATACATATTCTGGATATGAAAATAAAGTTAAAAAGAATTTAGAAAAAAGAGTAGAATCTATGAat > 1:3576979/1‑91 (MQ=255) tGGCGCAAAGCGTTGGTATGCAGTGCATACATATTCTGGATATGAAAATAAAGTTAAAAAGAATTTAGAAAAAAGAGTAGAATCTATGAat > 1:3576887/1‑91 (MQ=255) tGGCGCAAAGCGTTGGTATGCAGTGCATACATATTCTGGATATGAAAATAAAGTTAAAAAGAATTTAGAAAAAAGAGTAGAATCTATGAat < 1:2115375/91‑1 (MQ=255) tGGCGAAAAGCGTTGGTATGCAGTGCATACATATTCTGGATATGAAAATAAAGTTAAAAAGAATTTAGAAAAAAGAGTAGAATCTATGAat < 1:2448987/91‑1 (MQ=255) ggCGCAAAGCGTTGGTATGCAGTGCATACATATTCTGGATATGAAAATAAAGTTAAAAAGAATTTAGAAAAAAGAGTAGAATCTATGAata > 1:3576587/1‑91 (MQ=255) ggCGCAAAGCGTTGGTATGCAGTGCATACATATTCTGGATATGAAAATAAAGTTAAAAAGAATTTAGAAAAAAGAGTAGAATCTATGAata > 1:3560876/1‑91 (MQ=255) gcgcAAAGCGTTGGTATGCAGTGCATACATATTCTGGATATGAAAATAAAGTTAAAAAGAATTTAGAAAAAAGAGTAGAATCTATGAatat > 1:1940097/1‑91 (MQ=255) cgcAAAGCGTTGGTATGCAGTGCATACATATTCTGGATATGAAAATAAAGTTAAAAAGAATTTAGAAAAAAGAGTAGAATCTATGAATATg > 1:1965406/1‑91 (MQ=255) cAAAGCGTTGGTATGCAGTGCATACATATTCTGGATATGAAAATAAAGTTAAAAAGAATTTAGAAAAAAGAGTAGAATCTATGAATATGAc < 1:1434490/91‑1 (MQ=255) cAAAGCGTTGGTATGCAGTGCATACATATTCTGGATATGAAAATAAAGTTAAAAAGAATTTAGAAAAAAGAGTAGAATCTATGAATATGAc < 1:1434526/91‑1 (MQ=255) cAAAGCGTTGGTATGCAGTGCATACATATTCTGGATATGAAAATAAAGTTAAAAAGAATTTAGAAAAAAGAGTAGAATCTATGAATATGAc < 1:276943/91‑1 (MQ=255) aGCGTTGGTATGCAGTGCATACATATTCTGGATATGAAAATAAAGTTAAAAAGAATTTAGAAAAAAGAGTAGAATCTATGAATATGACTGa > 1:1357005/1‑91 (MQ=255) aGCGTTGGTATGCAGTGCATACATATTCTGGATATGAAAATAAAGTTAAAAAGAATTTAGAAAAAAGAGTAGAATCTATGAATATGACTGa < 1:3065318/91‑1 (MQ=255) aGCGTTGGTATGCAGTGCATACATATTCTGGATATGAAAATAAAGTTAAAAAGAATTTAGAAAAAAGAGTAGAATCTATGAATATGACTGa > 1:1144131/1‑91 (MQ=255) aGCGTTGGTATGCAGTGCATACATATTCTGGATATGAAAATAAAGTTAAAAAGAATTTAGAAAAAAGAGTAGAATCTATGAATATGACTGa > 1:1144092/1‑91 (MQ=255) gCGTTGGTATGCAGTGCATACATATTCTGGATATGAAAATAAAGTTAAAAAGAATTTAGAAAAAAGAGTAGAATCTATGAATATGACTGaa < 1:592607/91‑1 (MQ=255) gCGTTGGTATGCAGTGCATACATATTCTGGATATGAAAATAAAGTTAAAAAGAATTTAGAAAAAAGAGTAGAATCTATGAATATGACTGaa < 1:2571952/91‑1 (MQ=255) cGTTGGTATGCAGTGCATACATATTCTGGATATGAAAATAAAGTTAAAAAGAATTTAGAAAAAAGAGTAGAATCTATGAATATGACTGAAc < 1:3368732/91‑1 (MQ=255) cGTTGGTATGCAGTGCATACATATTCTGGATATGAAAATAAAGTTAAAAAGAATTTAGAAAAAAGAGTAGAATCTATGAATATGACTGAAc < 1:881308/91‑1 (MQ=255) ttGGTATGCAGTGCATACATATTCTGGATATGAAAATAAAGTTAAAAAGAATTTAGAAAAAAGAGTAGAATCTATGAATATGACTGAACaa < 1:2038670/91‑1 (MQ=255) tatgTATGCACTGCATACATATTCTGGATATGAAAATAAAGTTAAAAAGAATTTAGAAAAAAGAGTAGAATCTATGAATATGACTGAACaa > 1:3946015/4‑91 (MQ=255) ggTATGCAGTGCATACATATTCTGGATATGAAAATAAAGTTAAAAAGAATTTAGAAAAAAGAGTAGAATCTATGAATATGACTGAACAAAt > 1:60485/1‑91 (MQ=255) gTACGCAGTGCATACATATTCTGGATATGAAAATAAAGTTAAAAAGAATTTAGAAAAAAGAGTAGAATCTATGAATATGACTGAACAAATc < 1:3136199/91‑1 (MQ=255) tATGCAGTGCATACATATTCTGGATATGAAAATAAAGTTAAAAAGGATTTAGAAAAAAGAGTAGAATCTATGAATATGACTGAACAAATCt < 1:901866/91‑1 (MQ=255) tATGCACTGCATACATATTCTGGATATGAAAATAAAGTTAAAAAGAATTTAGAAAAAAGAGTAGAATCTATGAATATGACTGAACAAATCt > 1:2550084/1‑91 (MQ=255) tATGCACTGCATACATATTCTGGATATGAAAATAAAGTTAAAAAGAATTTAGAAAAAAGAGTAGAATCTATGAATATGACTGAACAAATCt > 1:2827340/1‑91 (MQ=255) aTGCAGTGCATACATATTCTGGATATGAAAATAAAGTTAAAAAGAATTTAGAAAAAAGAGTAGAATCTATGAATATGACTGAACAAATCtt < 1:2373835/91‑1 (MQ=255) aTGCACTGCATACATATTCTGGATATGAAAATAAAGTTAAAAAGAATTTAGAAAAAAGAGTAGAATCTATGAATATGACTGAACAAATCtt > 1:1681830/1‑91 (MQ=255) aTGCACTGCATACATATTCTGGATATGAAAATAAAGTTAAAAAGAATTTAGAAAAAAGAGTAGAATCTATGAATATGACTGAACAAATCtt > 1:3567638/1‑91 (MQ=255) tGCACTGCATACATATTCTGGATATGAAAATAAAGTTAAAAAGAATTTAGAAAAAAGAGTAGAATCTATGAATATGACTGAACAAATCttt > 1:33076/1‑91 (MQ=255) tGCACTGCATACATATTCTGGATATGAAAATAAAGTTAAAAAGAATTTAGAAAAAAGAGTAGAATCTATGAATATGACTGAACAAATCttt > 1:2440527/1‑91 (MQ=255) gCAGTGCATACATATTCTGGATATGAAAATAAAGTTAAAAAGAATTTAGAAAAAAGAGTAGAATCTATGAATATGACTGAACAAATCTTTa > 1:3512970/1‑91 (MQ=255) gCAGTGCATACATATTCTGGATATGAAAATAAAGTTAAAAAGAATTTAGAAAAAAGAGTAGAATCTATGAATATGACTGAACAAATCTTTa < 1:316332/91‑1 (MQ=255) gCAGTGCATACATATTCTGGATATGAAAATAAAGTTAAAAAGAATTTAGAAAAAAGAGTAGAATCTATGAATATGACTGAACAAATCTTTa < 1:2681561/91‑1 (MQ=255) gCACTGCATCCATATTCTGGATATGAAAATAAAGTTAAAAAGAATTTAGAAAAAAGAGTAGAATCTATGAATATGACTGAACAAATCTTTa > 1:3054276/1‑91 (MQ=255) aGTGCATACATATTCTGGATATGAAAATAAAGTTAAAAAGAATTTAGAAAAAAGAGTAGAATCTATGAATATGACTGAACAAATCTTTaga > 1:1208366/1‑91 (MQ=255) gTGCATACATATTCTGGATATGAAAATAAAGTTAAAAAGAATTTAGAAAAAAGAGTAGAATCTATGAATATGACTGAACAAATCTTTagag < 1:1878627/91‑1 (MQ=255) gTGCATACATATTCCGGATATGAAAATAAAGTTAAAAAGAATTTAGAAAAAAGAGTAGAATCTATGAATATGACTGAACAAATCTTTagag < 1:1878556/91‑1 (MQ=255) | GATTTAGGAATTACAGCATTGAAAAATTTATTATTTCGTTAGAGGAGTGAAGACATGTCTGAAGAAGTTGGCGCAAAGCGTTGGTATGCAGTGCATACATATTCTGGATATGAAAATAAAGTTAAAAAGAATTTAGAAAAAAGAGTAGAATCTATGAATATGACTGAACAAATCTTTAGAG > USA300TCH1516_ALE/581811‑581991 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |