| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | USA300TCH1516_ALE | 702,553 | T→A | 12.7% | F116I (TTT→ATT) | nhaK_1 → | Sodium, potassium, lithium and rubidium/H(+) antiporter |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | USA300TCH1516_ALE | 702,553 | 0 | T | A | 12.7% | 311.3 / 34.3 | 102 | F116I (TTT→ATT) | nhaK_1 | Sodium, potassium, lithium and rubidium/H(+) antiporter |
| Reads supporting (aligned to +/- strand): ref base T (52/37); new base A (3/10); total (55/47) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 3.38e-02 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 7.07e-01 | |||||||||||
Only 100 of 105 total aligned reads displayed.
TGATGGCATTAGGATTAGTCATTACTACTGTGATAGGTGTAGGTTTATTTATTCATTGGATTTGGCCAGATTTACCTATTGGAGCAGCATTTGCAATTGCTGCCATTCTTTGTCCTACTGATGCAGTAGCAGTGCAAGCAATCACTAAAGGAAAGGTCTTGCCAAAAGGAGCAATGACAA > USA300TCH1516_ALE/702464‑702643 | tgatgGCATTAGGATTAGTCATTACTACTGTGATAGGTGTAGGTTTATTTATTCATTGGATTTGGCCAGATTTACCTATTGGAGCAGCAtt > 1:2301107/1‑91 (MQ=255)tgatgGCATTAGGATTAGTCATTACTACTGTGATAGGTGTAGGTTTATTTATTCATTGGATTTGGCCAGATTTACCTATTGGAGCAGCAtt < 1:1519007/91‑1 (MQ=255) atgGCATTAGGATTAGTGATTACTACTGTGATGGGTGTAGGTTTATTTATTCATTGGATTTGGCCAGATTTACCTATTGGAGCAGCATTTg < 1:3554718/91‑1 (MQ=255) ggCATTAGGATTAGTCATTACTACTGTGATAGGTGTAGGTTTATTTATTCATTGGATTTGGCCAGATTTACCTATTGGAGCAGCAATTGCa < 1:1709883/91‑1 (MQ=255) ggCATTAGGATTAGTCATTACTACTGTGATAGGTGTAGGTTTATTTATTCATTGGATTTGGCCAGATTTACCTATTGGAGCAGCAATTGCa < 1:481478/91‑1 (MQ=255) gCATTAGGATTAGTCATTACTACTGTGATAGGTGTAGGTTTATTTATTCATTGGATTTGGCCAGATTTACCTATTGGAGCAGCAATTGCaa < 1:897371/91‑1 (MQ=255) gCATTAGGATTAGTCATTACTACTGTGATAGGTGTAGGTTTATTTATTCATTGGATTTGGCCAGATTTACCTATTGGAGCAGCAATTGCaa < 1:2940081/91‑1 (MQ=255) gCATTAGGATTAGTCATTACTACTGTGATAGGTGTAGGTTTATTTATTCATTGGATTTGGCCAGATTTACCTATTGGAGCAGCAATTGCaa < 1:635687/91‑1 (MQ=255) gCATTAGGATTAGTCATTACTACTGTGATAGGTGTAGGTTTATTTATTCATTGGATTTGGCCAGATTTACCTATTGGAGCAGCAATTGCaa < 1:3106560/91‑1 (MQ=255) gCATTAGGATTAGTCATTACTACTGTGATAGGTGTAGGTTTATTTATTCATTGGATTTGGCCAGATTTACCTATTGGAGCAGCAATTGCaa < 1:1583548/91‑1 (MQ=255) gCATTAGGATTAGTCATTACTACTGTGATAGGTGTAGGTTTATTTATTCATTGGATTTGGCCAGATTTACCTATTGGAGCAGCAATTGCaa < 1:1583783/91‑1 (MQ=255) cATTAGGATTAGTCATTACTACTGTGATAGGTGTAGGTTTATTTATTCATTGGATTTGGCCAGATTTACCTATTGGAGCAGCAATTGCaaa < 1:1977269/91‑2 (MQ=255) cATTAGGATTAGTCATTACTACTGTGATAGGTGTAGGTTTATTTATTCATTGGATTTGGCCAGATTTACCTATTGGAGCAGCAATTGCaaa < 1:1977192/91‑2 (MQ=255) ttAGGATTAGGCATTACTACTGTGATAGGTGTAGGTTTATTTATTCATTGGATTTGGCCAGATTTACCTATTGGAGCAGCATTTGCAATtg < 1:502260/91‑1 (MQ=255) tAGGATTAGTCATTACTACTGTGATAGGTGTAGGTTTATTTATTCATTGGATTTGGCCAGATTTACCTATTGGAGCAGCATTTGCAATtgc < 1:708435/91‑1 (MQ=255) ggATTAGTCATTACTACTGTGATAGGTGTAGGTTTATTTATTCATTGGATTTGGCCAGATTTACCTATTGGAGCAGCATTTGCAATtgctg > 1:1043282/1‑91 (MQ=255) ggATTAGTCATTACTACTGTGATAGGTGTAGGTTTATTTATTCATTGGATTTGGCCAGATTTACCTATTGGAGCAGCATTTGCAATtgctg < 1:1992510/91‑1 (MQ=255) gATTAGTCATTACTACTGTGATAGGTGTAGGTTTATTTATTCATTGGATTTGGGCAGATTTACCTATTGGAGCAGCATTTGCAATtgctgc < 1:3506068/91‑1 (MQ=255) gATTAGTCATTACTACTGTGATAGGTGTAGGTTTATTTATTCATTGGATTTGGCCAGATTTACCTATTGGAGCAGCATTTGCAATtgctgc < 1:1038025/91‑1 (MQ=255) aTTAGTCATTACTACTGTGATAGGTGTAGGTTTATTTATTCATTGGATTTGGCCAGATTTACCTATTGGAGCAGCATTTGCAATTGCTGcc < 1:3787854/91‑1 (MQ=255) aTTAGTCATTACTACTGTGATAGGTGTAGGTTTATTTATTCATTGGATTTGGCCAGATTTACCTATTGGAGCAGCATTTGCAATTGCTGcc > 1:634183/1‑91 (MQ=255) aTTAGTCATTACTACTGTGATAGGTGTAGGTTTATTTATTCATTGGATTTGGCCAGATTTACCTATTGGAGCAGCATTTGCAATTGCTGcc > 1:634382/1‑91 (MQ=255) tAGTCATTACTACTGTGATAGGTGTAGGTTTATTTATTCATTGGATTTGGCCAGATTTACCTATTGGAGCAGCATTTGCAATTGCTGCCAt < 1:941372/91‑1 (MQ=255) tAGTCATTACTACTGTGATAGGTGTAGGTTTATTTATTCATTGGATTTGGCCAGATTTACCTATTGGAGCAGCATTTGCAATTGCTGCCAt < 1:1713318/91‑1 (MQ=255) tAGTCATTACTACTGTGATAGGTGTAGGTTTATTTATTCATTGGATTTGGCCAGATTTACCTATTGGAGCAGCATTTGCAATTGCTGCCAt > 1:1411166/1‑91 (MQ=255) gTCATTACTACTGTGATAGGTGTAGGTTTATTTATTCATTGGATTTGGCCAGATTTACCTATTGGAGCAGCATTTGCAATTGCTGCCATTc > 1:2935732/1‑91 (MQ=255) tCATTACTACTGTGATAGGTGTAGGTTTATTTATTCATTGGATTTGGCCAGATTTACCTATTGGAGCAGCATTTGCAATTGCTGCCATTCt > 1:2861402/1‑91 (MQ=255) tCATTACTACTGTGATAGGTGTAGGTTTATTTATTCATTGGATTTGGCCAGATTTACCTATTGGAGCAGCATTTGCAATTGCTGCCATTCt > 1:2861439/1‑91 (MQ=255) tCATTACTACTGTGATAGGTGTAGGTTTATTTATTCATTGGATTTGGCCAGATTTACCTATTGGAGCAGCATTTGCAATTGCTGCCATTCt > 1:2861850/1‑91 (MQ=255) tCATTACTACTGTGATAGGTGTAGGTTTATTTATTCATTGGATTTGGCCAGATTTACCTATTGGAGCAGCATTTGCAATTGCTGCCATTCt < 1:2335216/91‑1 (MQ=255) cATTACTACTGTGATAGGTGTAGGTTTATTTATTCATTGGATTTGGCCAGATTTACCTATTGGAGCAGCATTTGCAATTGCTGCCATTCtt < 1:267334/91‑1 (MQ=255) actactGTGATAGGTGTAGGTTTATTTATTCATTGGATTTGGCCAGATTTACCTATTGGAGCAGCATTTGCAATTGCTGCCATTCTTTGTc > 1:3795875/1‑91 (MQ=255) actactGTGATAGGTGTAGGTTTATTTATTCATTGGATTTGGCCAGATTTACCTATTGGAGCAGCATTTGCAATTGCTGCCATTCTTTGTc < 1:2538855/91‑1 (MQ=255) actactGTGATAGGTGTAGGTTTATTTATTCATTGGATTTGGCCAGATTTACCTATTGGAGCAGCATTTGCAATTGCTGCCATTCTTTGTc > 1:334224/1‑91 (MQ=255) ctactGTGATAGGTGTAGGTTTATTTATTCATTGGATTTGGCCAGATTTACCTATTGGAGCAGCATTTGCAATTGCTGCCATTCTTTGTcc < 1:2314500/91‑1 (MQ=255) ctactGTGATAGGTGTAGGTTTATTTATTCATTGGATTTGGCCAGATTTACCTATTGGAGCAGCATTTGCAATTGCTGCCATTCTTTGTcc < 1:2314797/91‑1 (MQ=255) actGTGATAGGTGTAGGTTTATTTATTCATTGGATTTGGCCAGATTTACCTATTGGAGCAGCATTTGCAATTGCTGCCATTCTTTGTCCTa > 1:1484886/1‑91 (MQ=255) actGTGATAGGTGTAGGTTTATTTATTCATTGGATTTGGCCAGATTTACCTATTGGAGCAGCATTTGCAATTGCTGCCATTCTTTGTCCTa > 1:1655605/1‑91 (MQ=255) ctGTGATAGGTGTAGGTTTATTTATTCATTGGATTTGGCCAGATTTACCTATTGGAGCAGCATTTGCAATTGCTGCCATTCTTTGTCCTAc > 1:2005957/1‑91 (MQ=255) ctGTGATAGGTGTAGGTTTATTTATTCATTGGATTTGGCCAGATTTACCTATTGGAGCAGCATTTGCAATTGCTGCCATTCTTTGTCCTAc > 1:2005597/1‑91 (MQ=255) gtgATAGGTGTAGGTTTATTTATTCATTGGATTTGGCCAGATTTACCTATTGGAGCAGCATTTGCAATTGCTGCCATTCTTTGTCCTACTg < 1:1817984/91‑1 (MQ=255) gATAGGTGTAGGTTTATTTATTCATTGGATTTGGCCAGATTTACCTATTGGAGCAGCATTTGCAATTGCTGCCATTCTTTGTCCTACTgca < 1:151831/91‑3 (MQ=255) aTAGGTGTAGGTTTATTTATTCATTGGATTTGGCCAGATTTACCTATTGGAGCAGCATTTGCAATTGCTGCCATTCTTTGTCCTACTGATg > 1:812215/1‑91 (MQ=255) tAGGTGTAGGTTTATTTATTCATTGGATTTGGCCAGATTTACCTATTGGAGCAGCATTTGCAATTGCTGCCATTCTTTGTCCTACTgcatc < 1:2608614/91‑5 (MQ=255) tAGGTGTAGGTTTATTTATTCATTGGATTTGGCCAGATTTACCTATTGGAGCAGCATTTGCAATTGCTGCCATTCTTTGTCCTACTGATGc > 1:378854/1‑91 (MQ=255) aGGTGTAGGTTTATTTATTCATTGGATTTGGCCAGATTTACCTATTGGAGCAGCATTTGCAATTGCTGCCATTCTTTGTCCTACTGATGCa > 1:3999569/1‑91 (MQ=255) aGGTGTAGGTTTATTTATTCATTGGATTTGGCCAGATTTACCTATTGGAGCAGCATTTGCAATTGCTGCCATTCTTTGTCCTACTGATGCa > 1:4000159/1‑91 (MQ=255) aGGTGTAGGTTTATTTATTCATTGGATTTGGCCAGATTTACCTATTGGAGCAGCATTTGCAATTGCTGCCATTCTTTGTCCTACTGATGCa > 1:3078516/1‑91 (MQ=255) aGGTGTAGGTTTATTTATTCATTGGATTTGGCCAGATTTACCTATTGGAGCAGCATTTGCAATTGCTGCCATTCTTTGTCCTACTGATGCa > 1:323420/1‑91 (MQ=255) aGGTGTAGGTTTATTTATTCATTGGATTTGGCCAGATTTACCTATTGGAGCAGCATTTGCAATTGCTGCCATTCTTTGTCCTACTGATGCa > 1:3150377/1‑91 (MQ=255) ggTGTAGGTTTATTTATTCATTGGATTTGGCCAGATTTACCTATTGGAGCAGCATTTGCAATTGCTGCCATTCTTTGTCCTACTGATGCAg < 1:453999/91‑1 (MQ=255) ggTGTAGGTTTATTTATTCATTGGATTTGGCCAGATTAACCTATTGGAGCAGCATTTGCAATTGCTGCCATTCTTTGTCCTACTGATGCAg > 1:3506257/1‑91 (MQ=255) gtgtAGGTTTATTTATTCATTGGATTTGGCCAGATTTACCTATTGGAGCAGCATTTGCAATTGCTGCCATTCTTTGTCCTACTGATGCAGt > 1:2202000/1‑91 (MQ=255) tgtAGGTTTATTTATTCATTGGATTTGGCCAGATTTACCTATTGGAGCAGCATTTGCAATTGCTGCCATTCTTTGTCCTACTGATGCAGTa < 1:4024342/91‑1 (MQ=255) tgtAGGTTTATTTATTCATTGGATTTGGCCAGATTTACCTATTGGAGCAGCATTTGCAATTGCTGCCATTCTTTGTCCTACTGATGCAGTa > 1:3021029/1‑91 (MQ=255) gtAGGTTTATTTATTCATTGGATTTGGCCAGATTTACCTATTGGAGCAGCATTTGCAATTGCTGCCATTCTTTGTCCTACTGATGCAGTAg < 1:4123148/91‑1 (MQ=255) gtAGGTTTATTTATTCATTGGATTTGGCCAGATTTACCTATTGGAGCAGCATTTGCAATTGCTGCCATTCTTTGTCCTACTGATGCAGTAg < 1:2874989/91‑1 (MQ=255) gtAGGTTTATTTATTCATTGGATTTGGCCAGATTTACCTATTGGAGCAGCATTTGCAATTGCTGCCATTCTTTGTCCTACTGATGCAGTAg < 1:814015/91‑1 (MQ=255) tAGGTTTATTTATTCATTGGATTTGGCCAGATTTACCTATTGGAGCAGCATTTGCAATTGCTGCCATTCTTTGTCCTACTGATGCAGTAGc > 1:335767/1‑91 (MQ=255) tAGGTTTATTTATTCATTGGATTTGGCCAGATTTACCTATTGGAGCAGCATTTGCAATTGCTGCCATTCTTTGTCCTACTGATGCAGTAGc < 1:2855780/91‑1 (MQ=255) gTTTATTTATTCATTGGATTTGGCCAGATTTACCTATTGGAGCAGCATTTGCAATTGCTGCCATTCTTTGTCCTACTGATGCAGTAGCAGt < 1:2221714/91‑1 (MQ=255) tatttattCATTGGATTTGGCCAGATTTACCTATTGGAGCAGCATTTGCAATTGCTGCCATTCTTTGTCCTACTGATGCAGTAGCAGTgca > 1:3378235/1‑91 (MQ=255) tatttattCATTGGATTTGGCCAGATTTACCTATTGGAGCAGCATTTGCAATTGCTGCCATTCTTTGTCCTACTGATGCAGTAGCAGTgca < 1:3944902/91‑1 (MQ=255) tatttattCATTGGATTTGGCCAGATTTACCTATTGGAGCAGCATTTGCAATTGCTGCCATTCTTTGTCCTACTGATGCAGTAGCAGTgca > 1:420859/1‑91 (MQ=255) tatttattCATTGGATTTGGCCAGATTTACCTATTGGAGCAGCATTTGCAATTGCTGCCATTCTTTGTCCTACTGATGCAGTAGCAGTgca > 1:1919864/1‑91 (MQ=255) tatttattCATTGGATTTGGCCAGATTTACCTATTGGAGCAGCATTTGCAATTGCTGCCATTCTTTGTCCTACTGATGCAGTAGCAGTgca > 1:2806296/1‑91 (MQ=255) atttattCATTGGATTTGGCCAGATTTACCTATTGGAGCAGCATTTGCAATTGCTGCCATTCTTTGTCCTACTGATGCAGTAGCAGTgcaa < 1:4096838/91‑1 (MQ=255) ttCATTGGATTTGGCCAGATTTACCTATTGGAGCAGCATTTGCAATTGCTGCCATTCTTTGTCCTACTGATGCAGTAGCAGTGCAAGCAAt > 1:2526466/1‑91 (MQ=255) ttGGATTTGGCCAGATTTACCTATTGGAGCAGCATTTGCAATTGCTGCCATTCTTTGTCCTACTGATGCAGTAGCAGTGCAAGCAATCACt > 1:659081/1‑91 (MQ=255) tGGATTTGGCCAGATTTATCTATTGGAGCAGCATTTGCAATTGCTGCCATTCTTTGTCCTACTGCTGCAGTAGCCGTGCAAGCAATCACtt > 1:2869912/1‑90 (MQ=255) tGGATTTGGCCAGATTTACCTATTGGAGCAGCATTTGCAATTGCTGCCATTCTTTGTCCTACTGATGCAGTAGCAGTGCAAGCAATCACTa > 1:227230/1‑91 (MQ=255) ggATTTGGCCAGATTTACCTATTGGAGCAGCATTTGCAATTGCTGCCATTCTTTGTCCTACTGATGCAGTAGCAGTGCAAGCAATCACTaa > 1:2602498/1‑91 (MQ=255) aTTTGGCCAGATTTACCTATTGGAGCAGCATTTGCAATTGCTGCCATTCTTTGTCCTACTGATGCAGTAGCAGTGCAAGCAATCACTaaag > 1:3710026/1‑91 (MQ=255) aTTTGGCCAGATTTACCTATTGGAGCAGCATTTGCAATTGCTGCCATTCTTTGTCCTACTGATGCAGTAGCAGTGCAAGCAATCACTaaag > 1:1399587/1‑91 (MQ=255) ttGGCCAGATTTACCTATTGGAGCAGCATTTGCAATTGCTGCCATTCTTCGTCCTACTGATGCAGTAGCAGTGCAAGCAATCACTaaagga < 1:3592175/91‑1 (MQ=255) ggCCAGATTTACCTATTGGAGCAGCATTTGCAATTGCTGCCATTCTTTGTCCTACTGATGCAGTAGCAGTGCAAGCAATCACTaaaggaaa > 1:4097541/1‑91 (MQ=255) gCCAGATTTACCTATTGGAGCAGCATTTGCAATTGCTGCCATTCTTTGTCCTACTGATGCAGTAGCAGTGCAAGCAATCACTaaaggaaag > 1:1429087/1‑91 (MQ=255) aGATTTACCTATTGGAGCAGCATTTGCAATTGCTGCCATTCTTTGTCCTACTGATGCAGTAGCAGTGCAAGCAATCACTAAAGGAAAGGTc > 1:1783701/1‑91 (MQ=255) aGATTTACCTATTGGAGCAGCATTTGCAATTGCTGCCATTCTTTGTCCTACTGATGCAGTAGCAGTGCAAGCAATCACTAAAGGAAAGGTc > 1:1377603/1‑91 (MQ=255) tttACCTATTGGAGCAGCATTTGCAATTGCTGCCATTCTTTGTCCTACTGATGCAGTAGCAGTGCAAGCAATCACTAAAGGAAAGGTCTTg < 1:1975274/91‑1 (MQ=255) ttACCTATTGGAGCAGCATTTGCAATTGCTGCCATTCTTTGTCCTACTGATGCAGTAGCAGTGCAAGCAATCACTAAAGGAAAGGTCTTGc > 1:2689095/1‑91 (MQ=255) aCCTATTGGAGCAGCATTTGCAATTGCTGCCATTCTTTGTCCTACTGATGCAGTAGCAGTGCAAGCAATCACTAAAGGAAAGGTCTTGCCa > 1:2458856/1‑91 (MQ=255) ccTATTGGAGCAGCATTTGCAATTGCTGCCATTCTTTGTCCTACTGATGCAGTAGCAGTGCAAGCAATCACTAAAGGAAAGGTCTTGCCaa > 1:402350/1‑91 (MQ=255) ccTATTGGAGCAGCATTTGCAATTGCTGCCATTCTTTGTCCTACTGATGCAGTAGCAGTGCAAGCAATCACTAAAGGAAAGGTCTTGCCaa > 1:3379930/1‑91 (MQ=255) cTATTGGAGCAGCATTTGCAATTGCTGCCATTCTTTGTCCTACTGATGCAGTAGCAGTGCAAGCAATCACTAAAGGAAAGGTCTTGCCaaa > 1:282300/1‑91 (MQ=255) gAGCAGCATTTGCAATTGCTGCCATTCTTTGTCCTACTGATGCAGTAGCAGTGCAAGCAATCACTAAAGGAAAGGTCTTGCCAAAAGGAGc < 1:2306750/91‑1 (MQ=255) gcagcaATTGCAAATGCTGCCATTCTTTGTCCTACTGATGCAGTAGCAGTGCAAGCAATCACTAAAGGAAAGGTCTTGCCAAAAGGAGCaa > 1:3988551/1‑91 (MQ=255) cagcaTTTGCAATTGCTGCCATTCTTTGTCCTACTGATGCAGTAGCAGTGCAAGCAATCACTAAAGGAAAGGTCTTGCCAAAAGGAGCAAt > 1:1742133/1‑91 (MQ=255) cagcaTTTGCAATTGCTGCCATTCTTTGTCCTACTGATGCAGTAGCAGTGCAAGCAATCACTAAAGGAAAGGTCTTGCCAAAAGGAGCAAt > 1:63314/1‑91 (MQ=255) cagcaTTTGCAATTGCTGCCATTCTTTGTCCTACTGATGCAGTAGCAGTGCAAGCAATCACTAAAGGAAAGGTCTTGCCAAAAGGAGCAAt > 1:63336/1‑91 (MQ=255) agcaATTGCAAATGCTGCCATTCTTTGTCCTACTGATGCAGTAGCAGTGCAAGCAATCACTAAAGGAAAGGTCTTGCCAAAAGGAGCAATg > 1:102086/1‑91 (MQ=255) gcaTTTGCAATTGCTGCCATTCTTTGTCCTACTGATGCAGTAGCAGTGCAAGCAATCACTAAAGGAAAGGTCTTGCCAAAAGGAGCAATGa > 1:2012035/1‑91 (MQ=255) gcaTTTGCAATTGCTGCCATTCTTTGTCCTACTGATGCAGTAGCAGTGCAAGCAATCACTAAAGGAAAGGTCTTGCCAAAAGGAGCAATGa < 1:2445467/91‑1 (MQ=255) caTTTGCAATTGCTGCCATTCTTTGTCCTACTGATGCAGTAGCAGTGCAAGCAATCACTAAAGGAAAGGTCTTGCCAAAAGGAGCAATGAc < 1:1510143/91‑1 (MQ=255) caTTTGCAATTGCTGCCATTCTTTGTCCTACTGATGCAGTAGCAGTGCAAGCAATCACTAAAGGAAAGGTCTTGCCAAAAGGAGCAATGAc < 1:435947/91‑1 (MQ=255) caTTTGCAATTGCTGCCATTCTTTGTCCTACTGATGCAGTAGCAGTGCAAGCAATCACTAAAGGAAAGGTCTTGCCAAAAGGAGCAATGAc < 1:435929/91‑1 (MQ=255) caTTTGCAATTGCTGCCATTCTTTGTCCTACTGATGCAGTAGCAGTGCAAGCAATCACTAAAGGAAAGGTCTTGCCAAAAGGAGCAATGAc < 1:2618954/91‑1 (MQ=255) caTTTGCAATTGCTGCCATTCTTTGTCCTACTGATGCAGTAGCAGTGCAAGCAATCACTAAAGGAAAGGTCTTGCCAAAAGGAGCAATGAc > 1:4129972/1‑91 (MQ=255) aTTTGCAATTGCTGCCATTCTTTGTCCTACTGATGCAGTAGCAGTGCAAGCAATCACTAAAGGAAAGGTCTTGCCAAAAGGAGCAATGACa < 1:2292802/91‑1 (MQ=255) tttGCAATTGCTGCCATTCTTTGTCCTACTGATGCAGTAGCAGTGCAAGCAATCACTAAAGGAAAGGTCTTGCCAAAAGGAGCAATGACaa < 1:414516/91‑1 (MQ=255) | TGATGGCATTAGGATTAGTCATTACTACTGTGATAGGTGTAGGTTTATTTATTCATTGGATTTGGCCAGATTTACCTATTGGAGCAGCATTTGCAATTGCTGCCATTCTTTGTCCTACTGATGCAGTAGCAGTGCAAGCAATCACTAAAGGAAAGGTCTTGCCAAAAGGAGCAATGACAA > USA300TCH1516_ALE/702464‑702643 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |