| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | USA300TCH1516_ALE | 1,747,382 | (TAC)3→2 | coding (2065‑2067/2280 nt) | USA300HOU_RS08710 ← | Heme uptake protein MmpL11 |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | USA300TCH1516_ALE | 1747374 | 1747376 | 3 | 21 [0] | [0] 22 | USA300HOU_RS08710 | Heme uptake protein MmpL11 |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | 1747377 = | 0 (0.000) | 16 (1.000) | 15/280 | 0.2 | 100% | coding (2072/2280 nt) | USA300HOU_RS08710 | Heme uptake protein MmpL11 |
| ? | USA300TCH1516_ALE | = 1747373 | 0 (0.000) | coding (2076/2280 nt) | USA300HOU_RS08710 | Heme uptake protein MmpL11 | |||||
GGCGATTTTTTCAACTGACGTTTTTTCATTATTCCCCATAGCGGAACGGCAATGAAGATTGAAGAGAATACACCAGAAATCAATCCGATAAATAATGCTAAAGTAAAGTTGAATATCGTAGGAGCACCGAAGAATAGTATAGCAACTACTACTACAATAACTGTTAATACTGTATTAATTGAACGTGTCATTGTCTGTCTAATTGATCTATTAACGATATCATCAATTTGTTCTGTTGTCGTAATCACTTTAACCTTTTGTAAGTTTTCACGTACACGGTCAAACGTTACGATTGT > USA300TCH1516_ALE/1747230‑1747525 | ttcggcgattttttcaactgacgttttttcattattccccatagcggaacggcaatgaagattgaagagaatacaccagaaatcaatccgataaataatgctaaagtaaagttgaatatcgtaggagcaccgaagaatagtatagcaac < 1:320463‑M1/2‑1 (MQ=255)ttcggcgattttttcaactgacgttttttcattattccccatagcggaacggcaatgaagattgaagagaatacaccagaaatcaatccgataaataatgctaaagtaaagttgaatatcgtaggagcaccgaagaatagtatagcaac < 1:124200‑M1/2‑1 (MQ=255)ttcggcgattttttcaactgacgttttttcattattccccatagcggaacggcaatgaagattgaagagaatacaccagaaatcaatccgataaataatgctaaagtaaagttgaatatcgtaggagcaccgaagaatagtatagcaac > 1:256095‑M1/148‑149 (MQ=255)ttcggcgattttttcaactgacgttttttcattattccccatagcggaacggcaatgaagattgaagagaatacaccagaaatcaatccgataaataatgctaaagtaaagttgaatatcgtaggagcaccgaagaatagtatagcaac < 1:75268‑M1/2‑1 (MQ=255) gcgattttttcaactgacgttttttcattattccccatagcggcacggcaatgaagattgaagagaatacaccagaaatcaatccgataaataatgctaaagtaaagttgaatatcgtaggagcaccgaagaatagtatagcaactact > 1:268102‑M1/144‑149 (MQ=255) caactgacgttttttcattattccccatagcggaacggcaatgaagattgaagagaatacaccagaaatcaatccgataaataatgctaaagtaaagttgaatatcgtaggagcaccgaagaatagtatagcaACTACTACAATAACTg > 1:84670‑M1/134‑149 (MQ=255) tccccatagcggaacggcaatgaagattgaagagaatacaccagaaatcaatccgataaataatgctaaagtaaagttgaatatcgtaggagcaccgaagaatagtatagcaACTACTACAATAACTGTTAATACTGTATTAATTGAAc < 1:335120‑M1/37‑1 (MQ=255) gcggaacggcaatgaagattgaagagaatacaccagaaatcaatccgataaataatgctaaagtaaagttgaatatcgtaggagcaccgaagaatagtatagcaACTACTACAATAACTGTTAATACTGTATTAATTGAACGTGTCAtt < 1:251119‑M1/45‑1 (MQ=255) ggaacggcaatgaagattgaagagaatacaccagaaatcaatccgataaataatgctaaagtaaagttgaatatcgtaggagcaccgaagaatagtatagcaACTACTACAATAACTGTTAATACTGTATTAATTGAACGTGTCATtgt > 1:139302‑M1/103‑149 (MQ=255) ggaacggcaatgaagattgaagagaatacaccagaaatcaatccgataaataatgctaaagtaaagttgaatatcgtaggagcaccgaagaatagtatagcaACTACTACAATAACTGTTAATACTGTATTAATTGAACGTGTCATtgt > 1:271588‑M1/103‑149 (MQ=255) aagattgaagagaatacaccagaaatcaatccgataaataatgctaaagtaaagttgaatatcgtaggagcaccgaagaatagtatagcaACTACTACAATAACTGTTAATACTGTATTAATTGAACGTGTCATTGTCTGTCTAATTGa > 1:143919‑M1/91‑149 (MQ=255) ttgaagagaatacaccagaaatcaatccgataaataatgctaaagtaaagttgaatatcgtaggagcaccgaagaatagtatagcaACTACTACAATAACTGTTAATACTGTATTAATTGAACGTGTCATTGTCTGTCTAATTGATCTa > 1:186575‑M1/87‑149 (MQ=255) gaagagaatacaccagaaatcaatccgataaataatgctaaagtaaagttgaatatcgtaggagcaccgaagaatagtatagcaACTACTACAATAACTGTTAATACTGTATTAATTGAACGTGTCATTGTCTGTCTAATTGATCTAtt < 1:21109‑M1/65‑1 (MQ=255) agaatacaccagaaatcaatccgataaataatgctaaagtaaagttgaatatcgtaggagcaccgaagaatagtatagcaACTACTACAATAACTGTTAATACTGTATTACTTGAACGTGTCATTGTCTGTCTAATTGATCTATTAACg < 1:176134‑M1/69‑1 (MQ=255) gtaaagttgaatatcgtaggagcaccgaagaatagtatagcaACTACTACAATAACTGTTAATACTGTATTAATTGAACGTGTCATTGTCTGTCTAATTGATCTATTAACGATATCATCAATTTGTTCTGTTGTCGTAATCACTTTAAc < 1:267598‑M1/107‑1 (MQ=255) agttgaatatcgtaggagcaccgaagaatagtatagcaACTACTACAATAACTGTTAATACTGTATTAATTGAACGTGTCATTGTCTGTCTAATTGATCTATTAACGATATCATCAATTTGTTCTGTTGTCGTAATCACTTTAACCttt > 1:250989‑M1/39‑149 (MQ=255) agttgaatatcgtaggagcaccgaagaatagtatagcaACTACTACA‑TAACTGTTAATACTGTATTAATTGAACGTGTCATTGTCTGTCTAATTGATCTATTAACGATATCATCAATTTGTTCTGTTGTCGTAATCACTTTAACCtttt > 1:34354‑M1/39‑149 (MQ=255) ttgaatatcgtaggagcaccgaagaatagtatagcaACTACTACAATAACTGTTAATACTGTATTAATTGAACGTGTCATTGTCTGTCTAATTGATCTATTATCGATATCATCAATTTGTTCTGTTGTCGTAATCACTTTAACcttttt < 1:263818‑M1/113‑2 (MQ=255) gtaggagcaccgaagaatagtatagcaACTACTACAATAACTGTTAATACTGTATTAATTGAACGTGTCATTGTCTGTCTAATTGATCTATTAACGATATCATCAATTTGTTCTGTTGTCGTAATCACTTTAACCTTTTGTAAGTTTTc > 1:80631‑M1/28‑149 (MQ=255) agtatagcaACTACTACAATAACTGTTAATACTGTATTAATTGAACGTGTCATTGTCTGTCTAATTGATCTATTAACGATATCATCAATTTGTTCTGTTGTCGTAATCACTTTAACCTTTTGTAAGTTTTCACGTACACGGTCAAACGt > 1:255905‑M1/10‑149 (MQ=255) caACTACTACAATAACTGTTAATACTGTATTAATTGAACGTGTCATTGTCTGTCTAATTGATCTATTAACGATATCATCAATTTGTTCTGTTGTCGTAATCACTTTAACCTTTTGTAAGTTTTCACGTACACGGTCAAACGTTACGAtt < 1:127422‑M1/147‑1 (MQ=255) ACTACTACAATAACTGTTAATACTGTATTAATTGAACGTGTCATTGTCTGTCTAATTGATCTATTAACGATATCATCAATTTGTTCTGTTGTCGTAATCACTTTAACCTTTTGTAAGTTTTCACGTACACGGTCAAACGTTACGATTGt > 1:333157‑M1/1‑149 (MQ=255) | GGCGATTTTTTCAACTGACGTTTTTTCATTATTCCCCATAGCGGAACGGCAATGAAGATTGAAGAGAATACACCAGAAATCAATCCGATAAATAATGCTAAAGTAAAGTTGAATATCGTAGGAGCACCGAAGAATAGTATAGCAACTACTACTACAATAACTGTTAATACTGTATTAATTGAACGTGTCATTGTCTGTCTAATTGATCTATTAACGATATCATCAATTTGTTCTGTTGTCGTAATCACTTTAACCTTTTGTAAGTTTTCACGTACACGGTCAAACGTTACGATTGT > USA300TCH1516_ALE/1747230‑1747525 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |