New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	512620 =	39 (1.300)	30 (1.380) +TTATCTTGTCCATTTTATTTTTTAACCAAAATTTGATTAA	23/214	0.1	51.4%	intergenic (+688/‑6075)	recR/speA_2	Recombination protein RecR/Arginine decarboxylase
	?	USA300TCH1516_ALE	1998278 =	NA (NA)					intergenic (‑6/+3329)	USA300TCH1516_01882/USA300TCH1516_01883	tRNA‑Val/tRNA‑Ala

TAGGATAAGGGCGTTCAGTACAGATGACAAAGGTGTAATTTTTACTGTTGTTAAGCAGTTTGAAAGCCTGTATAGTATTTATTTGTTGAGGCAAACAAAACAACTCAACTTAAGAAATAACTTGAATTACTAACGAAAATTAATTTTAAAAAGTTATTGACTTAAATGTTAATAAAATGTATAATTAATTCTTGTCGGTAAGAAAAATGAACATTGAAAACTGAATGACAATATGTCAACGTTAATTCCAAAAAACGTAACTATAAGTTACAAACATTATTTAGTATTTATGA  >  USA300TCH1516_ALE/512473‑512765                                                                                                                                                    |                                                                                                                                                  tAGGATAAGGGCGTTCAGTACAGATGACAAAGGTGTAATTTTTACTGTTGTTAAGCAGTTTGAAAGCCTGTATAGTATTTATTTGTTGAGGCAAACAAAACAACTCAACTTAAGAAATAACTTGAATTACTAACGAAAATTAATTTTa                                                                                                                                                   >  1:627343/1‑148 (MQ=255) caaggaggtcacacctgttcccatgccgaacacagaagttaagctccttagcgtcgatggtagtcgaacttacgttccgctagagtagaacgttgccaggcagttttttaatcaatttctggttaaaaaataaaaaggacaagaaaaa                                                                                                                                                   <  1:179877‑M1/1‑1 (MQ=255) caaggaggtcacacctgttcccatgccgaacacagaagttaagctccttagcgtcgatggtagtcgaacttacgttccgctagagtagaacgttgccaggcagttttttaatcaaattttggttaaaaaataaaatggacaagataaa                                                                                                                                                   <  1:73886‑M1/1‑1 (MQ=255) caaggaggtcacacctgttcccatgccgaacacagaagttaagctccttagcgtcgatggtagtcgaacttacgttccgctagagtagaacgttgccaggcagttttttaatcaaattttggttaaaaaataaaatggacaagataaa                                                                                                                                                   <  1:566022‑M1/1‑1 (MQ=255) caaggaggtcacacctgttcccatgccgaacacagaagttaagctccttagcggcgatggtagtcgaacttacgttccgctagagtagaacgttgccaggcagatttttaatcaaattttggttaaaaaataaaatggacaagataaa                                                                                                                                                   <  1:179854‑M1/1‑1 (MQ=255)         tcacacctgttcccatgccgaacacagaagttaagctccttagcgtcgatggtagtcgagcttacgttccgctagagtagaacgttgccaggcagttttttaatcaaattttggttaaaaaataaaatggacaagataaAAAAAGTTa                                                                                                                                           <  1:73849‑M1/9‑1 (MQ=255)          ggCGTTCAGTACAGATGACAAAGGTGTAATTTTTAATGTTGTTAAGCAGTTTGAAAGCCTGTATAGTATTTATTTGTTGAGGCAAACAAAACAACTCAACTTAAGAAATAAATTTAATTACTAACGAAAATTAATTTTAAAAAATTAt                                                                                                                                          >  1:56057/1‑148 (MQ=255)           acacctgttcccatgccgaacacagaagttaagctccttagcgtcgatggtagtcgaacttacgttccgctagagtagaacgttgccaggcagttttttaatcaaattttggttaaaaaataaaatggacaagataaAAAAAGTTAtt                                                                                                                                         >  1:551494‑M1/138‑148 (MQ=255)              ttCAGTACAGATGACAAAGGTGTAATTTTTACTGTTGTTAAGCAGTTTGAAAGCCTGTATAGTATTTATTTGTTGAGGCAAACAAAACAACTCAACTTAAGAAATAACTTGAATTACTAACGAAAATTAATTTTAAAAAGTTATTGAc                                                                                                                                      <  1:227865/148‑1 (MQ=255)              cctgttcccatgccgaacacagaagttaagctccttagcgtcgatggtagtcgaacttacgttccgctagagtagaacgttgccaggcagttttttaatcaaattttggttaaaaaataaaatggacaagataaAAAAAGTTATTGAc                                                                                                                                      <  1:551493‑M1/14‑1 (MQ=255)              cctgttcccatgccgaacacagaagttaagctccttagcgtcgatggtagtcgaacttacgttccgctagagtagaacgttgccaggcagttttttaatcaaattttggttaaaaaataaaatggacaaaataaAAAAAGTTATTGAc                                                                                                                                      <  1:586201‑M1/14‑1 (MQ=255)               ctgttcccatgccgaacacagaagttaagctccttagcgtcgatggtagtcgaacttacgttccgctagagtagaacgttgccaggcagttttttaatcaaattttggttaaaaaataaaatggacaagataaAAAAAGTTATTGACt                                                                                                                                     >  1:284902‑M1/134‑148 (MQ=255)                cAGTACAGATGACAAAGGTGTAATTTTTACTGTTGTTAAGCAGTTTGAAAGCCTGTATAGTATTTATTTGTTGAGGCAAACAAAACAACTCAACTTAAGAAATAACTTGAATTACTAACGAAAATTAATTTTAAAAAGTTATTGACtt                                                                                                                                    <  1:249653/148‑1 (MQ=255)                   tACAGATGACAAAGGTGTAATTTTTACTGTTGTTAAGCAGTTTGAAAGCCTGTATAGTATTTATTTGTTGAGGCAAACAAAACAACTCAACTTAAGAAATAACTTGAATTACTAACGAAAATTAATTTTAAAAAGTTATTGACTTaaa                                                                                                                                 <  1:588699/148‑1 (MQ=255)                    aCAGATGACAAAGGTGTAATTTTTACTGTTGTTAAGCAGTTTGAAAGCCTGTATAGTATTTATTTGTTGAGGCAAACAAAACAACTCAACTTAAGAAATAACTTGAATTACTAACGAAAATTAATTTTAAAAAGTTATTGACTTAAAt                                                                                                                                >  1:551583/1‑148 (MQ=255)                     ccatgcctaacacagaagttaagctccttagcgtcgatggtggttgattttacgttccgctagagtagaacgttgccaggcagttttttaatcaaattttggttaaaaaataaaatggacaagataaAAAAAGTTATTGACTTAAATg                                                                                                                               >  1:361617‑M1/128‑148 (MQ=255)                      catgccgaacacagaagttaagctccttagcgtcgatggtagtcgaacttacgttccgctagagtagaacgttgccaggcagttttttaatcaaattttggttaaaaaataaaatggacaagataaAAAAAGTTATTGACTTAAATGt                                                                                                                              <  1:512029‑M1/22‑1 (MQ=255)                          ccgaacacagaagttaagctccttagcgtcgatggtagtcgaacttacgttccgctagagtagaacgttgccaggcagttttttaatcaaattttggttaaaaaataaaatggacaagataaAAAAAGTTATTGACTTAAatgttgat                                                                                                                          <  1:503894‑M1/26‑4 (MQ=255)                             aacacagaagttaagctccttagcgtcgatggtagtcgaacttacgcaccgctagagtagaacgttgccaggcagttttttaatcaaattttggttaaaaaataaaatggacaagataaAAAAAGTTATTGACTTAAATGTTGATaaa                                                                                                                       <  1:278577‑M1/29‑1 (MQ=255)                               cacagaagttaagctccgtagcgtcgatggtagtcgaacttacgttccgctagagtagaacgttgccaggcagttttttaatcaaattttggttaaaaaataaaatggacaagataaAAAAAGTTATTGACTTAAATGTTGATAAAAt                                                                                                                     >  1:179315‑M1/118‑148 (MQ=255)                               atgtgtAATTTTTACTGTCTTTAAGCAGTTTGTAATCCTGTATAGTATTTATTTGTTGAGGCAAACAAAACAACTCAACTTAAGAAATAACTTGAATTACTAACGAAAATTAATTGTAAAAAGTTATTGACTTAAATGTTAATAAAAt                                                                                                                     <  1:403798/146‑1 (MQ=255)                                acagaagttaagctccttagcgtcgatggtagtcgaacttacgttccgctagagtagaacgttgccaggcagttttttaatcaaattttggttaaaagatcaaatggccaagttaaAAAAAGTTATTGACTTAAATGTTGATAAAATg                                                                                                                    <  1:84259‑M1/32‑1 (MQ=255)                                 gtgtAATTTTTAATGTTGTTGAGCAGTTTGAAAGCCTGTATAGTATTTATTTGTTGAGGCAAACAAAACAACTCAACTTAAGAAATAACTTGAATTACTAACGAACAATAAATTTAAAAAGTTATTGACTTAAGTGTTAATAAAATGt                                                                                                                   >  1:447107/1‑148 (MQ=255)                                 cagaagttaagctccttagcgtcgatggtagtcgaacttacgttccgctagagtagaacgttgccaggcagttttttaatcaaattttggttaaaaaataaaatggacaagataaAAAAAGTTATTGACTTAAATGTTGATAAAATGt                                                                                                                   <  1:589640‑M1/33‑1 (MQ=255)                                     aaTTTTTACTGTTGTGAAGCAGTTTGAAAGCCTGTATAGTATTTATTTGTTGAGGCAAACAAAACAACTCAACTTAAGAAATAACTTGAATTACTAACGAAAATTAATTTTAAAAAGTTATTGACTTAAATGTTAATAAAATGTAtaa                                                                                                               <  1:202804/148‑1 (MQ=255)                                        ttttACTGTTGTTAAGCAGTTTGAAAGCCTGTATAGTATTTATTTGTTGAGGCAAACAAAACAACTCAACTTAAGAAATAACTTGAATTACTAACGAAAATTAATTTTAAAAAGTTATTGACTTAAATGTTAATAAAATGTAtaatta                                                                                                            <  1:82742/148‑1 (MQ=255)                                        ttttACTGTTGTTAAGCAGTTTGAAAGCCTGTATAGTATTTATTTGTTGAGGCAAACAAAACAACTCAACTTAAGAAATAACTTGAATTACTAACGAAAATTAATTTTAAAAAGTTATTGACTTAAATGTTAATAAAATGTAtaatta                                                                                                            <  1:478804/148‑1 (MQ=255)                                             tccttagcgtcgatggtagtcgaacttacgttccgctagagtagaacgttgccaggcagttttttaatcaaattttggttaaaaaataaaatggacaagataaAAAAAGTTATTGACTTATATGTTGATAAAATGTATAATTAATTCt                                                                                                       >  1:335916‑M1/104‑148 (MQ=255)                                             tccttagcgtcgatggtagtcgaacttacgttccgctagagtagaacgttgccaggcagttttttaatcaaattttggttaaaaaataaaatggacaagataaAAAAAGTTATTGACTTAAATGTTGATAAAATGTATAATTAATTCt                                                                                                       >  1:519838‑M1/104‑148 (MQ=255)                                                    cgtcgatggtagtcgaacttacgttccgctagagtagaacgttgccaggcagttttttaatcaaattttggttaaaaaataaaatggacaagataaAAAAAGTTATTGACTTAAATGTTGATAAAATGTATAATTAATTCTTGTCGGt                                                                                                <  1:621442‑M1/52‑1 (MQ=255)                                                      aGCAGTTTGAAAGCCTGTATAGTATTTATTTGTTGAGGCAAACAGAACAACTCAACTTAAGAAATCACTTGAATTACTAACGAAAATTAATTTTAAAAAGATATTGACTTAGATGTTAATAAAATGTATAATTAATTGTTTTCGGTaa                                                                                              >  1:181158/1‑148 (MQ=255)                                                           tttGAAAGCCTGTATAGTATTTATTTGTTGAGGCAAACAAAACAACTCAACTTAAGAAATAACTTGAATTACTAACGAAAATTAATTTTAAAAAGTTATTGACTTAAATGTTAATAAAATGTATAATTAATTCTTGTCGGTAAGaaaa                                                                                         <  1:482047/148‑1 (MQ=255)                                                            ttGAAAGCCTGTATAGTATTTATTTGTTGAGGCAAACAAAACAACTCAACTTAAGAAATAACTTGAATTACTAACGAAAATTAATTTTAAAAAGTTATTGACGTAAATGTTAATAAAATGTATAATTAATTCTTGTCGGTAAGaaaaa                                                                                        >  1:175610/1‑148 (MQ=255)                                                            gtagtcgaacttacgttccgctagagtagaacgttgccaggcagttttttaatcaaattttggttaaaaaataaaatggacaagataaAAAAAGTGATTGACTTAAATGTTGATAAAATGTATAATTAATTCTTGTCGGTAAGaaaaa                                                                                        <  1:163510‑M1/60‑1 (MQ=255)                                                                tcgaacttacgttccgctagagtagaacgttgccaggcagttttttaatcaaattttggttaaaaaataaaatggacaagataaAAAAAGTTATTGACTTAAATGTTGATAAAATGTATAATTAATTCTTGTCGGTAAGAAAAATGaa                                                                                    <  1:267858‑M1/64‑1 (MQ=255)                                                                tcgaacttacgttccgctagagtagaacgttgccaggcagttttttaatcaaattttggttaaaaaataaaatggacaagataaAAAAAGTTATTGACTTAAATGTTGATAAAATGTATAATTAATTCTTGTCGGTAAGAAAAATGaa                                                                                    >  1:135039‑M1/85‑148 (MQ=255)                                                                        acgttccgctagagtagaacgttgccaggcagttttttaatcaaattttggttaaaaaataaaatggacaagataaAAAAAGTTATTGACTTAAATGTTGATAAAATGTATAATTAATTCTTGTCGGTAAGAAAAATGAACATTGaaa                                                                            >  1:512050‑M1/77‑148 (MQ=255)                                                                             atttatttGTTGAGGCAAACAAAACAACTCAACTTAAGAAATAACTTGAATTACTAACGAAAATTAATTTTAAAAAGTTATTGACTTAAATGTTAATAAAATGTATAATTAATTCTTGTCGGTAAGAAAAATGAACATTGAAAACTGa                                                                       >  1:400008/1‑148 (MQ=255)                                                                              tttatttGTTGAGGCAAACAAAACAACTCAACTTAAGAAATAACTTGAATTACTAACGAAAATTAATTTTAAAAAGTTATTGACTTAAATGTTAATAAAATGTATAATTAATTCTTGTCGGTAAGAAAAATGAACATTGAAAACTGaa                                                                      >  1:530189/1‑148 (MQ=255)                                                                                 atttGTTGAGGCAAACAAAACAACTCAACTTAAGACATAACTTGAATTACTAAGGAAAATTAATTTTAAAAAGTTATTGACTTAAATGTTAATAAAATGTATAATTAATTCTTGTCGGTAGGAGAAATGAACATTGAAAACTGAATGa                                                                   <  1:354200/148‑1 (MQ=255)                                                                                 atttGTTGAGGCAAACAAAACAACTCAACTTAAGAAATAACTTGAATTACTAACGAAAATTAATTTTAAAAAGTTATTGACTTAAATGTTAATAAAATGTATAATTAATTCTTGTCGGTAAGAAAAATGAACATTGAAAACTGAATGa                                                                   <  1:437347/148‑1 (MQ=255)                                                                                  tttGTTGAGGCAAACAAAACAACTCAACTTAAGAAATAACTTGAATTACTAACGAAAATTAATTTTAAAAAGTTATTGACTTAAATGTTAATAAAATGTATAATTAATTCTTGTCGGTAAGAAAAATGAACATTGAAAACTGAATgcc                                                                  >  1:164669/1‑146 (MQ=255)                                                                                   ttgttgAGGCAAACAAAACAACTCAACTTAAGAAATAACTTGAATTACTAACGAAAATTAATTTTAAAAAGTTATTGACTTAAATGTTAATAAAATGTATAATTAATTCTTGTCGGTAAGAAAAATGAACATTGAAAACTGAATGACa                                                                 <  1:618264/148‑1 (MQ=255)                                                                                    tgttgAGGCAAACAAAACAACTCAACTTAAGAAATAACTTGAATTACTAACGAAAATTAATTTTAAAAAGTTATTGACTTAAATGTTAATAAAATGTATAATTAATTCTTGTCGGTAAGAAAAATGAACATTGAAAACTGAATGACaa                                                                <  1:247974/148‑1 (MQ=255)                                                                                    agtagaacgttgccaggcagttttttaatcaaattttggttaaaaaataaaatggacaagataaAAAAAGTTATTGACTTAAATGTTGATAAAATGTATAATTAATTCTTGTCGGTAAGAAAAATGAACATTGAAAACTGAATGACaa                                                                >  1:404400‑M1/65‑148 (MQ=255)                                                                                      ttgAGGCAAACAAAACAACTCAACTTAAGAAATAACTTGAATTACTAACGAAAATTAATTTTAAAAAGTTATTGACTTAAATGTTAATAAAATGTATAATTAATTCTTGTCGGTAAGAAAAATGAACATTGAAAACTGAATGACAata                                                              >  1:57951/1‑148 (MQ=255)                                                                                           gCAAACAAAACAACTCAACTTAAGAAATAACTTGAATTACTAACGAAAATTAATTTTAAAAAGTTATTGACTTAAATGTTAATAAAATGTATAATTAATTCTTGTCGGTAAGAAAAATGAACATTGAAAACTGAATGACCATATGtaa                                                         >  1:187467/1‑146 (MQ=255)                                                                                           gCAAACAAAACAACTCAACTTAAGAAAAAACTTGAATTACTAACGAGAATTAATTTTAAAAAGTTATTGACTTAAATGTTAATAAAATGTATAATTAATTCTTGTCGGTAAGAAAAATGAACATTGAAAACTGAATGACAATATGTCa                                                         >  1:354149/1‑148 (MQ=255)                                                                                              aacaaaacaaCTCAACTTAAGAAATAACTTGAATTACTAACGAAAATTAATTTTAAAAAGTTATTGACTTAAATGTTAATAAAATGTATAATTAATTCTTGTCGGTAAGAAAAATGAACATTGAAAACTGAATGACAATATGTCAACg                                                      >  1:106397/1‑148 (MQ=255)                                                                                               acaaaacaaCTCAACTTAAGAAATAACTTGAATTACTAACGAAAATTAATTTTAAAAAGTTATTGACTTAAATGTTAATAAAATGTATAATTAATTCTTGTCGGTAAGAAAAATGAACATTGAAAACTGAATGACAATATGTCAACGt                                                     <  1:617864/148‑1 (MQ=255)                                                                                                 caggcagttttttaatcaaattttggttaaaaaataaaatggacaagataaAAAAAGTTATTGACTTAAATGTTGATAAAATGTATAATTAATTATTGTCGGAAAGAAGAAGCAACAGTGAAAACTGAATGACAATATGTAAAAGTTa                                                   <  1:488552‑M1/97‑1 (MQ=255)                                                                                                   ggcagttttttaatcaaattttggttaaaaaataaaatggacaagataaAAAAAGTTATTGACTTAAATGTTGATAAAATGTATAATTAATTCTTGTCGGTACGCCAACGGAACATGGAAAACTGAATGACACTATGTCAacgttcat                                                 <  1:15693‑M1/99‑4 (MQ=255)                                                                                                   ggcagttttttaatcaaattttggttaaaaaataaaatggacaagataaAAAAAGTTATTGACTTAAATGTTGATAAAATGTATAATTAATTCTTGTCGGTAAGAAAAATGAACATTGAAAACTGAATGACAATATGTCAACGTTAAt                                                 <  1:255012‑M1/99‑1 (MQ=255)                                                                                                         tttttaatcaaattttggttaaaaaataaaatggacaagataaAAAAAGTTATTGACTTAAATGTTGATAAAATTTATAATTAATTCTTGTCGGTAAGAAAAATGAACATTGACAACTGAATGACAATAAGTCAACGTTAATTACaaa                                           <  1:28459‑M1/105‑1 (MQ=255)                                                                                                         tttttaatcaaattttggttaaaaaataaaatggacaagataaAAAAAGTTATTGACTTAAATGTTGATAAAATGTATAATTAATTATTGGGTTGAAGAAAAATGAACATTGAAAACTGAATGACAATATGTCAACGTTAATTCCaaa                                           <  1:300849‑M1/105‑1 (MQ=255)                                                                                                         tcaactTAAGAAATAACTTGAATTACTAACGAAAATTAATTTTAAAAAGTTATTGACTTAAATGTTAATAAAATGTATAATTAATTCTTGTCGGTAAGAAAAATGAACATTGAAAACTGAATGACAATATGTCAACGTTAATTCCaaa                                           >  1:308053/1‑148 (MQ=255)                                                                                                           tttaatcaaattttggttaaaaaataaaatggacaagataaAAAAAGTTATTGACTTAAATGTTGATAAAATGTATAATTAATTCTTGTCGGTAAGAAAAATGAACATTGAAAACTGAATGACAATATGTCAACGTTAATTCCaaaaa                                         >  1:43591‑M1/42‑148 (MQ=255)                                                                                                                aaGAAATAACTTGATTTACTAACGAAAATTAATTTTGAAAAGATATTGACTTAAATGTTAATAAAATGTATAATTAATTCTTGTCGGTAAGAAGAATGAACATTGAAAACTGAATGACAATATGTCAACGTTAATCCCAAAAAACGTa                                    <  1:446432/148‑1 (MQ=38)                                                                                                                 caaattttggttaaaaaataaaatggacaagataaAAAAAGTTATTGACTTAAATGTTGATAAAATGTATAATTAATTCTTGTCGGTAAGAAAAATGAACATTGAAAACTTAATGACAATATGTCAACGTTAATTCCAAAAAACGTaa                                   >  1:628115‑M1/36‑148 (MQ=255)                                                                                                                 aGAAATAACTTGAATTACTAACGAAAATTAATTTTAAAAAGTTATTGACTTAAATGTTAATAAAATGTATAATTAATTCTTGTCGGTAAGAAAAATGAACATTGAAAACTGAATGACAATATGTCAACGTTAATTCCAAAAAACGTaa                                   <  1:203794/148‑1 (MQ=255)                                                                                                                  gAAAGAATTGGAATTACTAACGAAAATTAATTTTAAAAAGTTATCGACTTAAATGTTAATAAAATGTATAATTAACTCTTGTCGGTAAGAAAAATGAACATTGAAAACTGAATGACAATATGTCAACGTTAATTCCAAAAAACGTAAc                                  <  1:356040/148‑1 (MQ=37)                                                                                                                    aaTAACTTGAATTACTAACGAAAATTAATTTTAAAAAGTTATTGACTTAAATGTTAATAAAATGTATAATTAATTCTTGTCGGTAAGAAAAATGAACATTGAAAACTGAATGACAATATGTCAACGTTAATTCCAAAAAACGTAACta                                >  1:177697/1‑148 (MQ=255)                                                                                                                          ttGAATTACTAACGAAAATTAATTTTAAAAAGTTATTGACTTAAATGTTAATAAAATGTATAATTAATTCTTGTCGGTAAGAAAAATGAACATTGAAAACTGAATGACAATATGTCAACGTTAATTCCAAAAAACGTAACTATAAGtt                          <  1:474361/148‑1 (MQ=255)                                                                                                                          ttGAATTACTAACGAAAATTAATTTTAAAAAGTTATTGACTTAAATGTTAATAAAATGTATAATTAATTCTTGTCGGTAAGAAAAATGAACATTGAAAACTGAATGACAATATGTCAAAGTTAATTCCAAAAAACGTAACTATAAGtt                          >  1:427623/1‑148 (MQ=255)                                                                                                                              aTTACTAACGAAAATTAATTTTAAAAAGTTATTGACTTAAATGTTAATAAAATGTATAATTAATTCTTGTCGGTAAGAAAAATGAACATTGAAAACTGAATGACAATATGTCAACGTTAATTCCAAAAAACGTAACTATAGGTTACaa                      >  1:493444/1‑148 (MQ=255)                                                                                                                                tACTAACGAAAATTAATTTTAAAAAGTTATTGACTTAAATGTTAATAAAATGTATAATTAATTCTTGTCGGTAAGAAAAATGAACATTGAAAACTGAATGACAATATGTCAACGTTAATTCCAAAAAACGTAACTATAAGTTACAAAc                    <  1:416644/148‑1 (MQ=255)                                                                                                                                 aataaaatggacagaagaaAAAAAGTTATTGACTTAAATGTTGATAAAATGTATAATTAATTCTTGTCGGTAAGAAAAATGAACATTGAAAACTGAATGACAAGATGTCAACGTTAATTCCAAAAAACGTAACTATAAGTTACAAACa                   >  1:110901‑M1/20‑148 (MQ=255)                                                                                                                                  cTAACGAAAATTAATTTTAAAAAGTTATTGACTTAAATGTTAATAAAATGTATAATTAATTCTTGTCGGTAAGAAAAATGAACATTGAAAACTGAATGACAATATGTCAACGTTAATTCCAAAAAACGTAACTATAAGTTACAAACat                  >  1:322342/1‑148 (MQ=255)                                                                                                                                       gAAAATTAATTTTAAAAAGTTATTGACTTAAATGTTAATAAAATGTATAATTAATTCTTGTCGGTAAGAAAAATGAACATTGAAAACTGAATGACAATATGTCAACGTTAATTCCAAAAAACGTAACTATAAGTTACAAACATTAttt             >  1:28627/1‑148 (MQ=255)                                                                                                                                          aattaattTTAAAAAGTTATTGACTTAAATGCTAATAAAATGTATAATTAATTCTTGTCGGTAAGAAAAATGCACATTGAAAACTGAATGACAATATGTCAACGTTAATTATAAAAAACGTAACTATAAGTTCCAAACAATAATTaat          >  1:214684/1‑146 (MQ=25)                                                                                                                                                ttttAAAAAGTTATTGACTTAAATGTTAATAAAATGTATAATTAATTCTTGTCGGTAAGAAAAATGAACATTGAAAACTGAATGACAATATGTCAACGTTAATTCCAAAAAACGTAACTGTAAGTTACAAACATTATTTAGTATTTAt    >  1:229557/1‑148 (MQ=255)                                                                                                                                                  aaAAAAAGTTATTGACTTAAATGTTGATAAAATGTATAATTAAGTCTTGTCGGTAAGAAAAATGAACATTGAAAACTGAATGACAATATGTCAACGTTAATTCCAAAAAACGTAACTATAAGTTACAAACATTAGTTAGTATTTATGa  >  1:27807‑M1/3‑148 (MQ=255)                                                                                                                                                    |                                                                                                                                                  TAGGATAAGGGCGTTCAGTACAGATGACAAAGGTGTAATTTTTACTGTTGTTAAGCAGTTTGAAAGCCTGTATAGTATTTATTTGTTGAGGCAAACAAAACAACTCAACTTAAGAAATAACTTGAATTACTAACGAAAATTAATTTTAAAAAGTTATTGACTTAAATGTTAATAAAATGTATAATTAATTCTTGTCGGTAAGAAAAATGAACATTGAAAACTGAATGACAATATGTCAACGTTAATTCCAAAAAACGTAACTATAAGTTACAAACATTATTTAGTATTTATGA  >  USA300TCH1516_ALE/512473‑512765

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.