mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.33.1 revision 8505477f25b3
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | USA300TCH1516_ALE | 512,643 | 0 | A | G | 39.7% | 45.4 / 64.4 | 63 | intergenic (+711/‑6052) | recR/speA_2 | Recombination protein RecR/Arginine decarboxylase |
| * | USA300TCH1516_ALE | 111,512 | 0 | A | G | 34.0% | 51.8 / 40.4 | 47 | S194S (TCA→TCG) | USA300HOU_RS00520 | putative lipoprotein |
| * | USA300TCH1516_ALE | 72,398 | 0 | G | T | 29.3% | 56.3 / 26.4 | 41 | G192G (GGC→GGA) | arcD_1 | Arginine/ornithine antiporter |
| * | USA300TCH1516_ALE | 111,516 | 0 | C | A | 28.6% | 72.2 / 34.6 | 49 | Q196K (CAA→AAA) | USA300HOU_RS00520 | putative lipoprotein |
| Marginal new junction evidence (sorted from low to high skew) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | = 2464733 | 32 (1.070) | 3 (0.110) | 3/258 | 3.6 | 9.2% | intergenic (+29/+19) | gltS/fni | Sodium/glutamate symporter/Isopentenyl‑diphosphate delta‑isomerase |
| ? | USA300TCH1516_ALE | = 2464737 | 31 (1.180) | intergenic (+33/+15) | gltS/fni | Sodium/glutamate symporter/Isopentenyl‑diphosphate delta‑isomerase | |||||