Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	USA300TCH1516_ALE	2176692–2181126	2181126	1–4435	5 [3]	[4] 5	ilvA/USA300TCH1516_02069	L‑threonine dehydratase biosynthetic IlvA/tRNA‑Gly

ATAGTCACCAGACATATGAATGTAAATTATACATTCAAAACTAGATAGTAAGTAAAAGTGATTTTGCTTCGCAAAACATTTATTTTGATTAAGTCTTCGATCGATTAGTATTCGTCAGCTCCACATGTCACCATGCTTCCACCTCGAACCTATTAACCTCATCA  >  USA300TCH1516_ALE/2176551‑2176714                                                                                                                                             |                        ataGTCACCAGACATATGAATGTAAATTATACATTCAAAACTAGATAGTAAGTAAAAGTGATTTTGCTTCGCAAAACATTTATTTTGATTAAGTCTTCGATCGATTAGTATTCGTCAGCTCCACATGTCACCATGCTTCCa                         <  1:236184/141‑1 (MQ=32) ataGTCACCAGACATATGAATGTAAATTATACATTCAAAACTAGATAGTAAGTAAAAGTGATTTTGCTTCGCAAAACATTTATTTTGATTAAGTCTTCGATCGATTAGTATTCGTCAGCTCCACATGTCACCATGCTTCCa                         <  1:55122/141‑1 (MQ=32)           gACATATGAATGTAAATTATACATTCAAAACTAGATAGTAAGTAAAAGTGATTTTGCTTCGCAAAACATTTATTTTGATTAAGTCTTCGATCGATTAGTATTCGTCAGCTCCACATGTCACCATGCTTCCACCTCGAACCt               >  1:21936/1‑141 (MQ=32)             cATATGAATGTAAATTATACATTCAAAACTAGATAGTAAGTAAAAGTGATTTTGCTTCGCAAAACATTTATTTTGATTAAGTCTTCGATCGATTAGTATTCGTCAGCTCCACATGTCACCATGCTTCCACCTCGCACCTAt             >  1:9395/1‑141 (MQ=17)                        aaaTTATACATTCAAAACTAGATAGTAAGTAAAAGTGATTTTGCTTCGCAAAACATTTATTTTGATTAAGTCTTCGATCGATTAGTATTCGTCAGCTCCACATGTCACCATGCTTCCACCTCGAACCTATTAACCtcatca  <  1:405652/141‑1 (MQ=32)                                                                                                                                             |                        ATAGTCACCAGACATATGAATGTAAATTATACATTCAAAACTAGATAGTAAGTAAAAGTGATTTTGCTTCGCAAAACATTTATTTTGATTAAGTCTTCGATCGATTAGTATTCGTCAGCTCCACATGTCACCATGCTTCCACCTCGAACCTATTAACCTCATCA  >  USA300TCH1516_ALE/2176551‑2176714

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑