New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	= 1470058	69 (1.100)	4 (0.110) +GGGGCCCCAACATAGAGAATTTCGAAAAGAAATTCTACAGGCAATGCGAGTTGGGGTGT	3/162	7.2	9.0%	intergenic (‑105/‑240)	USA300TCH1516_01369/rnhA	hypothetical protein/14.7 kDa ribonuclease H‑like protein
	?	USA300TCH1516_ALE	= 2031785	70 (1.120)					intergenic (+251/+239)	USA300HOU_RS10250/USA300HOU_RS10255	hypothetical protein/hypothetical protein
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

CTGACTTTTCGTCATCTTCTGTGTTGGGACCCACACCCCAACTCGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTGTGTTGGGGCCCCTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAATATAACATCGTAGAGCATAGAACATTGATTTATGTCCCAGCCTGAAGATGATTTTTTTAGGAAGTATATTACAGTACTACGTATTAGAAAATCATCTTTGAATCAGCGAGTATTTTAAACACGTGTTA  >  USA300TCH1516_ALE/1469920‑1470197                                                                                                                                           |                                                                                                                                            cTGACTTTTCGTCATCTTCTGTGTTGGGACCCACACCCCAACTCGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTGTGTTGGGGCCCCTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAac                                                                                                                                           >  1:958577/1‑141 (MQ=39)      ttttCGTCATCTTCTGTGTTGGGACCCACACCCCAACTCGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTGTGTTGGGGCCCCTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTg                                                                                                                                      >  1:453771/1‑141 (MQ=39)          cGTCATCTTCTGTGTTGGGACCCACACCCCAACTCGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTGTGTTGGGGCCCCTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCATCTACTGCCaa                                                                                                                                  >  2:255046/1‑141 (MQ=255)          cGTCATCTTCTGTGTTGGGACCCACACCCCAACTCGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTGTGTTGGGGCCCCTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCaa                                                                                                                                  >  2:255059/1‑141 (MQ=39)             cATCTTCTGTGTTGGGACCCACACCCCAACTCGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTGTGTTGGGGCCCCTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAatat                                                                                                                               >  1:641037/1‑141 (MQ=38)                    tgtgTTGGGACCCACACCCCAACTCGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTGTGTTGGGGCCCCTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAATATAACATCg                                                                                                                        <  1:135698/141‑1 (MQ=38)                      tgtTGGGACCCACACCCCAACTCGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTGTGTTGGGGCCCCTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAATATAACATCGTa                                                                                                                      <  1:336565/141‑1 (MQ=39)                       gtTGGGACCCACACCCCACCTCGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTGTGTTGGGGCCCCTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAATATAACATCGTag                                                                                                                     <  1:962536/141‑1 (MQ=37)                       gtTGGGACCCACACCCCAACTCGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTGTGTTGGGGCCCCTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAATATAACATCGTag                                                                                                                     >  2:325564/1‑141 (MQ=38)                         tGGGACCCACACCCCAACTCGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTGTGTTGGGGCCCCTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAATATAACATCGTagag                                                                                                                   <  1:255711/141‑1 (MQ=38)                             ccccACCCCCCAACTCGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTGTGTTGGGGCCCCTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAATATAACATCGTAGAGCATa                                                                                                               <  1:779438/140‑1 (MQ=25)                              cccACACCCCAACTCGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTGTGTTGGGGCCCCTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAATATAACATCGTAGAGCATAg                                                                                                              <  1:41897/141‑1 (MQ=35)                               ccACACCCCAACTCGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTGTGTTGGGGCCCCTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAATATAACATCGTAGAGCATAGa                                                                                                             >  1:461868/1‑141 (MQ=35)                               ccACACCCCAACTCGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTGTGTTGGGGCCCCTGACTAGAATTG‑AAAAAGCTTGTGACAAGCGCATTTTCGTTCAGTCAACTACTGCCAATATAACATCGTAGAGCATAGaa                                                                                                            >  1:91976/1‑141 (MQ=255)                                 acacCCCAACTCGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTGTGTTGGGGCCCCTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAATATAACATCGTAGAGCATAGAAc                                                                                                           >  1:717882/1‑141 (MQ=34)                                    ccccAACTCGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTGTGTTGGGGCCCCTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAATATAACATCGTAGAGCATAGAACAtt                                                                                                        >  2:401538/1‑141 (MQ=35)                                    ccccAACTCGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTGTGTTGGGGCCCCTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAATATAACATCGTAGAGCATAGAACAtt                                                                                                        >  2:222320/1‑141 (MQ=35)                                     cccAACTCGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTGTGTTGGGGCCCCTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAATATAACATCGTAGAGCATAGAACATTg                                                                                                       >  1:185096/1‑141 (MQ=34)                                      ccAACTCGCATTGCCTGTAGAATTTATTTTCGAAATTCTCTGTGTTGGGGCCCCTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAATATAACATCGTAGAGCATAGAACATTGa                                                                                                      >  1:639622/1‑141 (MQ=21)                                         aCTCGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTGTGTTGGGGCCCCTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAATATAACATCGTAGAGCATAGAACATTGAttt                                                                                                   >  1:456902/1‑141 (MQ=35)                                              cATTGCCTGTAGAATTTCTTTTCGAAATTCTCTGTGTTGGGGCCCCTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAATATAACATCGTAGAGCATAGAACATTGATTTATGTc                                                                                              >  1:279555/1‑141 (MQ=32)                                                    cTGTAGAATTTCTTTTCGAAATTCTCTGTGTTGGGGCCCCTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAATATAACATCGTAGAGCATAGAACATTGATTTATGTCCCAGcc                                                                                        <  1:41534/141‑1 (MQ=32)                                                      gTAGAATTTCTTTTCGAAATTCTCTGTGTTGGGGCCCCTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAATATAACATCGTAGAGCATAGAACATTGATTTCTGTCCCAGCCTg                                                                                      >  1:49870/1‑141 (MQ=17)                                                        aGAATTTCTTTTCGAAATTCTCTGTGTTGGGGCCCCTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAATATAACATCGTAGAGCATAGAACATTGATTTATGTCCCAGCCTGaa                                                                                    >  1:432746/1‑141 (MQ=34)                                                          aaTTTCTTTTCGAAATTCTCTGTGTTGGGGCCCCTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAATATAACATCGTAGAGCATAGAACATTGATTTATGTCCCAGCCTGAAga                                                                                  <  1:498402/141‑1 (MQ=35)                                                           aTTTCTTTTCGAAATTCTCTGTGTTGGGGCCCCTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAATATAACATCGTAGAGCATAGAACATTGATTTATGTCCCAGCCTGAAgat                                                                                 <  2:197139/141‑1 (MQ=37)                                                            tttCTTTTCGAAATTCTCTGTGTTGGGGCCCCTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAATATAACATCGTAGAGCATAGAACATTGATTTATGTCCCAGCCTGAAgatg                                                                                <  1:925954/141‑1 (MQ=38)                                                              tCTTTTCGAAATTCTCTGTGTTGGGGCCCCTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAATATAACATCGTAGAGCATAGAACATTGATTTATGTCCCAGCCTGAAgatgat                                                                              >  2:240170/1‑141 (MQ=39)                                                                ttttCGAAATTCTCTGTGTTGGGGCCCCTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAATATAACATCGTAGAGCATAGAACATTGATTTATGTCCCAGCCTGAAGATGAttt                                                                            <  1:582674/141‑1 (MQ=40)                                                                ttttCGAAATTCTCTGTGTTGGGGCCCCTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCAATCTCGATCAGTCAACTACTGCCAATATAACATCGTAGAGCATAGAACATTGATTTATGTCCCAGCCTGAAGATGAttt                                                                            <  1:688943/141‑1 (MQ=255)                                                                ttttCGAAATTCTCTGTGTTGGGGCCCCTGACTAGAATGGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAATATAACATCGTAGAGCATAGAACATTGATTTATGTCCCAGCCTGAAGATGAttt                                                                            >  1:518931/1‑141 (MQ=255)                                                                         ttCTCTGTGTTGGGGCCCCTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAATATAACATCGTCGAGCATAGAACATTGATTTATGTCCCAGCCTGAAGATGATTTTTTTAGGaa                                                                   >  1:462446/1‑141 (MQ=255)                                                                          tctcTGTGTTGGGGCCCCTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAATATAACATCGTAGAGCATAGAACATTGATTTATGTCCCAGCCTGAAGATGATTTTTTTAGGAAg                                                                  <  1:581705/141‑1 (MQ=255)                                                                          tctcTGTGTTGGGGCCCCTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAATATAACATCGTAGAGCATAGAACATTGATTTATGTCCCAGCCTGAAGATGATTTTTTTAGGAAg                                                                  <  1:872278/141‑1 (MQ=255)                                                                          tctcTGTGTTGGGGCCCCTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAATATAACATCGTAGAGCATAGAACATTGATTTATGTCCCAGCCTGAAGATGATTTTTTTAGGAAg                                                                  >  1:252189/1‑141 (MQ=255)                                                                            tctGTGTTGGGGCCCCTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAATATAACATCGTAGAGCATAGAACATTGATTTATGTCCCAGCCTGAAGATGATTTTTTTAGGAAGta                                                                >  1:859210/1‑141 (MQ=255)                                                                             ctGTGTTGGGGCCCCTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAATATAACATCGTAGAGCATAGAACATTGATTTATGTCCCAGCCTGAAGATGATTTTTTTAGGAAGtat                                                               >  1:943502/1‑141 (MQ=255)                                                                               gtgtTGGGGCCCCTGACTATAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACCGCCAATATAACATCGTAGAGCATAGAACATTGATTTATGTCCCAGCCTGAAGATGATTTTTTTAGGAAGTatat                                                             <  1:677908/141‑1 (MQ=255)                                                                                    ggggCCCCTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAATATAACATCGTAGAGCATAGAACATTGATTTATGTCCCAGCCTGAAGATGATTTTTTTAGGAAGTATATTACAg                                                        <  1:423645/141‑1 (MQ=255)                                                                                     gggCCCCTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAATATAACATCGTAGAGCATAGAACATTGATTTATGTCCCAGCCTGAAGATGATTTTTTTAGGAAGTATATTACAGt                                                       >  1:186251/1‑141 (MQ=255)                                                                                        ccccTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAATATAACATCGTAGAGCATAGAACATTGATTTATGTCCCAGCCTGAAGATGATTTTTTTAGGAAGTATATTACAGtact                                                    >  2:216642/1‑141 (MQ=255)                                                                                          ccTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAATATAACATCGTAGAGCATAGAACATTGATTTATGTCCCAGCCTGAAGATGATTTTTTTAGGAAGTATATTACAGtactac                                                  >  2:140176/1‑141 (MQ=255)                                                                                           cTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAATATAACATCGTAGAGCATAGAACATTGATTTATGTCCCAGCCTGAAGATGATTTTTTTAGGAAGTATATTACAGTACTACg                                                 >  2:325598/1‑141 (MQ=255)                                                                                           cTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAATATAACATCGTAGAGCATAGAACATTGATTTATGTCCCAGCCTGAAGATGATTTTTTTAGGAAGTATATTACAGTACTACg                                                 >  1:485953/1‑141 (MQ=255)                                                                                             gACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAATATAACATCGTAGAGCATAGAACATTGATTTATGTCCCAGCCTGAAGATGATTTTTTTAGGAAGTATATTACAGTACTACGTa                                               >  1:97337/1‑141 (MQ=255)                                                                                                  gAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAATATAACATCGTAGAGCATAGAACATTGATTTATGTCCCAGCCTGAAGATGATTTTTTTAGGAAGTATATTACAGTACTACGTATTAGa                                          >  1:594827/1‑141 (MQ=255)                                                                                                      tGAAAAAAGCTTGTTTCAAGCGCATTTTCGTTCAGTCAACTACTGCCAATATAACATCGTAGAGCATAGAACATTGATTTATGTCCCAGCCTGAAGATGATTTTTTTAGGAAGTATATTACAGTACTACGTATTAGAAAat                                      <  1:816405/141‑1 (MQ=255)                                                                                                      tGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAATATAACATCGTAGAGCATAGAACATTGATTTATGTCCCAGCCTGAAGATGATTTTTTTAGGAAGTATATTACAGTACTACGTATTAGAAAat                                      >  1:312963/1‑141 (MQ=255)                                                                                                      tGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAATATAACATCGTAGAGCATAGAACATTGATTTATGTCCCAGCCTGAAGATGATTTTTTTAGGAAGTATATTACAGTACTACGTATTAGAAAat                                      <  1:325233/141‑1 (MQ=255)                                                                                                         aaaaaGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAATATAACATCGTAGAGCATAGAACATTGATTTATGTCCCAGCCTGAAGATGATTTTTTTAGGAAGTATATTACAGTACTACGTATTAGAAAatcat                                   >  1:457802/1‑141 (MQ=255)                                                                                                           aaaGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAATATAACATCGTAGAGCATAGAACATTGATTTATGTCCCAGCCTGAAGATGATTTTTTTAGGAAGTATATTACAGTACTACGTATTAGAAAATCATCt                                 <  1:534199/141‑1 (MQ=255)                                                                                                               atctttACAAGCGCATTTTCGTTCAGTCAACTACTGCCAATATAACATCGTAGAGCATAGAACATTGATTTATGTCCCAGCCTGAAGATGATTTTTTTAGGAAGTATATTACAGTACTACGTATTAGAAAATCATCTTTGa                             <  2:221672/137‑1 (MQ=255)                                                                                                                 tGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAATATAACATCGTAGAGCATAGAACATTGATTTATGTCCCAGCCTGAAGATGATTTTTTTAGGAAGTATATTACAGTACTACGTATTAGAAAATCATCTTTGAAt                           <  1:95844/141‑1 (MQ=255)                                                                                                                 tGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAATATAACATCGTAGAGCATAGAACATTGATTTATGTCCCAGCCTGAAGATGATTTTTTTAGGAAGTATATTACAGTACTACGTATTAGAAAATCATCTTTGAAt                           >  2:167593/1‑141 (MQ=255)                                                                                                                 tGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAATATAACATCGTAGAGCATAGAACATTGACTTATGTCCCAGCCTGAAGATGATTTTTTTAGGAAGTATATTACAGTACTACGTATTAGAACATCATCTTTGAAt                           >  1:861370/1‑141 (MQ=255)                                                                                                                   ttACAAGCGCATTTTCGTTCAGTCAACTACTGCCAATATAACATCGTAGAGCATAGAACATTGATTTATGTCCCAGCCTGAAGATGATTTTTTTAGGAAGTATATTACAGTACTACGTATTAGAAAATCATCTTTGAATCa                         >  1:404675/1‑141 (MQ=255)                                                                                                                    tACAAGCGCATTTTCGTTCAGTCAACTACTGCCAATATAACATCGTAGAGCATAGAACATTGATTTATGTCCCAGCCTGAAGATGATTTTTTTAGGAAGTATATTACAGTACTACGTATTAGAAAATCATCTTTGAATCAg                        >  1:27091/1‑141 (MQ=255)                                                                                                                    tACAAGCGCATTTTCGTTCAGTCAACTACTGCCAATATAACATCGTAGAGCATAGAACATTGATTTATGTCCCAGCCTGAAGATGATTTTTTTAGGAAGTATATTACAGTACTACGTATTAGAAAATCATCTTTGAATCAg                        <  1:539204/141‑1 (MQ=255)                                                                                                                     aCAAGCGCATTTTCGTTCAGTCAACTACTGCCAATATAACATCGTAGAGCGTAGAACATTGATTTATGTCCCAGCCTGAAGATGATTTTTTTAGGAAGTATATTACAGTACTACGTATTAGAAAATCATCTTTGAATCAGc                       <  1:238936/141‑1 (MQ=255)                                                                                                                     aCAAGCGCATTTTCGTTCAGTCAACTACTGCCAATATAACATCGTAGAGCATAGAACATTGATTTATGTCCCAGCCTGAAGATGATTTTTTTAGGAAGTATATTACAGTACTACGTATTAGAAAATCATCTTTGAATCAGc                       <  2:326638/141‑1 (MQ=255)                                                                                                                       aaGCGCATTTTCGTTCAGTCAACTACTGCCAATATAACATCGTAGAGCATAGAACATTGATTTATGTCCCAGCCTGAAGATGATTTTTTTAGGAAGTATATTACAGTACTACGTATTAGAAAATCATCTTTGAATCAGCGa                     >  1:405812/1‑141 (MQ=255)                                                                                                                        aGCGCATTTTCGTTCAGTCAACTACTGCCAATATAACATCGTAGAGCATAGAACATTGATTTATGTCCCAGCCTGCAGATGATTTTTTTAGGAAGTATATTACAGTACTACGTATTAGAAAATCATCTTTGAATCAGCGAg                    <  1:965076/141‑1 (MQ=255)                                                                                                                        aGCGCATTTTCGTTCAGTCAACTACTGCCAATATAACATCGTAGAGCATAGAACATTGATTTATGTCCCAGCCTGAAGATGATTTTTTTAGGAAGTATATTACAGTACTACGTATTAGAAAATCAGCTTTGAATCAGCGAg                    >  1:818121/1‑141 (MQ=255)                                                                                                                                ttCGTTCAGTCAACTACTGCCAATATAACATCGTAGAGCATAGAACATTGATTTATGTCCCAGCCTGAAGATGATTTTTTTAGGAAGTATATTACAGTACTACGTATTAGAAAATCATCTTTGAATCAGCGAGTATTTTaa            >  1:839656/1‑141 (MQ=255)                                                                                                                                ttCGTTCAGTCAACTACTGCCAATATAACATCGTAGAGCATAGAACATTGATTTATGTCCCAGCCTGAAGATGATTTTTTTAGGAAGTATATTACAGTACTACGTATTAGAAAATCATCTTTGAATCAGCGAGTATTTTaa            >  2:234356/1‑141 (MQ=255)                                                                                                                                ttCGTTCAGTCAACTACTGCCAATATAACATCGTAGAGCATAGAACATTGATTTATGTCCCAGCCTGAAGATGATTTTTTTAGGAAGTATATTACAGTACTACGTATTAGAAAATCATCTTTGAATCAGCGAGTATTTTaa            >  2:345139/1‑141 (MQ=255)                                                                                                                                    ttCAGTCAACTACTGCCAATATAACATCGTAGAGCATAGAACATTGATTTATGTCCCAGCCTGAAGATGATTTTTTTAGGAAGTATATTACAGTACTACGTATTAGAAAATCATCTTTGAATCAGCGAGTATTTTAAacac        >  1:94863/1‑141 (MQ=255)                                                                                                                                      cAGTCAACTACTGCCAATATAACATCGTAGAGCATAGAACATTGATTTATGTCCCAGCCTGAAGATGATTTTTTTAGGAAGTATATTACAGTACTACGTATTAGAAAATCATCTTTGAATCAGCGAGTATTTTAAACACgt      <  1:959090/141‑1 (MQ=255)                                                                                                                                          cAACTACTGCCAATATAACATCGTAGAGCATAGAAAATTGATTTATGTCCCAGCATGAAGATGATTTTTTTAGAAAGTATATTACAGTACTACGTATTAGAAAATCATCTTTGAATCAGCGAGTATTTTAAACACGTGTTa  <  1:934069/141‑1 (MQ=255)                                                                                                                                           |                                                                                                                                            CTGACTTTTCGTCATCTTCTGTGTTGGGACCCACACCCCAACTCGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTGTGTTGGGGCCCCTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAATATAACATCGTAGAGCATAGAACATTGATTTATGTCCCAGCCTGAAGATGATTTTTTTAGGAAGTATATTACAGTACTACGTATTAGAAAATCATCTTTGAATCAGCGAGTATTTTAAACACGTGTTA  >  USA300TCH1516_ALE/1469920‑1470197

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.