| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | 1373632 = | 46 (1.000) | 3 (0.070) | 3/238 | NT | 6.9% | intergenic (+7/‑117) | USA300TCH1516_01283/sbcD | hypothetical protein/Nuclease SbcCD subunit D |
| ? | USA300TCH1516_ALE | 1373681 = | 39 (0.920) | intergenic (+56/‑68) | USA300TCH1516_01283/sbcD | hypothetical protein/Nuclease SbcCD subunit D | |||||
TAAGTGCCAGTCTGCTGTATGTATAATTTTCATTACTGCCTCCATATAGAACATTTGTTCGCTTTTATTTTAATATAATCATTTCACCTTTTCAAGTAAAATTAAAACCACTCATTGACTGATTTAGAAGTCGATCACAAGTGGTTTTAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/1373781‑1373632‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑agtggttttaaTTTTACTTGAAAAGGTGAAATGATTATATTAAAATAAAAGCGAACAAATGTTCTATATGGAGGCAGTAATGAAAATTATACATACAGCAGACTGGCACTTAGGGAAAATATTAAATGGCAAACAGCTTTTAGAAGATCAA > USA300TCH1516_ALE/1373681‑1373820 TAAGTGCCAGTCTGCTGTATGTATAATTTTCATTACTGCCTCCATATAGAACATTTGTTCGCTTTTATTTTAATATAATCATTTCACCTTTTCAAGTAAAATTAAAACCACTCATTGACTGATTTAGAAGTCGATCACAAG < 1:457768/141‑1TAAGTGCCAGTCTGCTGTATGTATAATTTTCATTACTGCCTCCATATAGAACATTTGTTCGCTTTTATTTTAATATAATCATTTCACCTTTTCAAGTAAAATTAAAACCACTCATTGACTGATTTAGAAGTCGATCACAAG < 2:47684/141‑1TAAGTGCCAGTCTGCTGTATGTATAATTTTCATTACTGCCTCCATATAGAACATTTGTTCGCTTTTATTTTAATATAATCATCTCACCTTTTCAAATCACACCACAAATACTCCTTGACTGATTTCGCCGTCGAACACAAG > 1:748985/1‑141 CAGTCTGCTGTATGTATAATTTTCATTACTGCCTCCATATAGAACATTTGTCCGCTTTTATTTTAATATAATCATTTCACCTTTTCAAGTAAAATTAAAACCACTCATTGACTGATTTAGAAGTCGATCACAAGTGGTTTT < 1:743078/141‑1 AGTCTGCTGTATGTATAATTTTCATTACTGCCTCCATATAGAACATTTGTTCGCTTTTATTTTAATATAATCATTTCACCTTTTCAAGTAAAATTAAAACCACTCATTGACTGATTTAGAAGTCGATCACAAGTGGTTTTA > 1:25045/1‑141 AGTCTGCTGTATGTATAATTTTCATTACTGCCTCCATATAGAACATTTGTTCGCTTTTATTTTAATATAATCATTTCACCTTTTCAAGTAAAATTAAAACCACTCATTGACTGATTTAGAAGTCGATCACAAGTGGTTTTA > 2:293929/1‑141 TAAAACCACTCATTGACTGATTTAGAAGTCGATCACAAGTGGTTTTAATTTTACTTGAAAAGGTGAAATGATTATATTAAAATAAAAGCGAACAAATGTTCTATATGGAGGCAGTAATGAAAATTATACATACAGCAGACT > 1:104834/1‑141 AAAACCACTCATTGACTGATTTAGAAGTCGATCACAAGTGGTTTTAATTTTACTTGAAAAGGTGAAATGATTATATTAAAATAAAAGCGAACAAATGTTCTATATGGAGGCAGTAATGAAAATTATACATACAGCAGACTG > 1:488703/1‑141 CTCATTGACTGATTTAGAAGTCGATCACAAGTGGTTTTAATTTTACTTGAAAAGGTGAAATGATTATATTAAAATAAAAGCGAACAAATGTTCTATATGGAGGCAGTAATGAAAATTATACATACAGCAGACTGGCACTTA > 1:85804/1‑141 TGGTTTTAATTTTACTTGAAAAGGTGAAATGATTATATTAAAATAAAAGCGAACAAATGTTCTATATGGAGGCAGTAATGAAAATTATACATACAGCAGACTGGCACTTAGGGAAAATATTAAATGGCAAACAGCTTTTAG > 2:87709/1‑141 GGTTTTAATTTTACTTGAAAAGGTGAAATGATTATATTAAAATAAAAGCGAACAAATGTTCTATATGGAGGCAGTAATGAAAATTATACATACAGCAGACTGGCACTTAGGGAAAATATTAAATGGCAAACAGCTTTTAGA > 1:221069/1‑141 TTTAATTTTACTTGAAAAGGTGAAATGATTATATTAAAATAAAAGCGAACAAATGTTCTATATGGAGGCAGTAATGAAAATTATACATACAGCAGACTGGCACTTAGGGAAAATATTAAATGGCAAACAGCTTTTAGAAGA < 1:423621/141‑1 ATTTTACTTGAAAAGGTGAAATGATTATATTAAAATAAAAGCGAACAAATGTTCTATATGGAGGCAGTAATGAAAATCATACATACAGCAGACTGGCACTTCGGGAACATATTACCTGGCAAACAGCTTTAAGAAGATCAA > 2:65791/1‑141 TAAGTGCCAGTCTGCTGTATGTATAATTTTCATTACTGCCTCCATATAGAACATTTGTTCGCTTTTATTTTAATATAATCATTTCACCTTTTCAAGTAAAATTAAAACCACTCATTGACTGATTTAGAAGTCGATCACAAGTGGTTTTAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/1373781‑1373632‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑agtggttttaaTTTTACTTGAAAAGGTGAAATGATTATATTAAAATAAAAGCGAACAAATGTTCTATATGGAGGCAGTAATGAAAATTATACATACAGCAGACTGGCACTTAGGGAAAATATTAAATGGCAAACAGCTTTTAGAAGATCAA > USA300TCH1516_ALE/1373681‑1373820 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |