| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | = 1623544 | 27 (0.580) | 4 (0.090) | 3/238 | NT | 13.4% | intergenic (+29/+54) | marA/malL | Multiple antibiotic resistance protein MarA/Oligo‑1,6‑glucosidase |
| ? | USA300TCH1516_ALE | = 1623575 | 27 (0.640) | intergenic (+60/+23) | marA/malL | Multiple antibiotic resistance protein MarA/Oligo‑1,6‑glucosidase | |||||
TCTCGATATTTCATTTAATGACCCATTCACTAAAATTCAGCTTTGGATTCCTGTTAAACAGAGTCCTTATGACGAAGATTAAATAATAAAAAACAAAGAAGCCCCCTAATA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/1623434‑1623544‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gccccctaataGAATCTAAGGCCATTTGTAGACCTATAGATATATTAGGGGGCTTCTTTGTTTTTTATTATTTAATCTTCGTCATAAGGACTCTGTTTAACAGGAATCCAAAGCTGAATTTTAGTGAATGGGTCATTAAATGAAATATCGA < USA300TCH1516_ALE/1623575‑1623436 TCTCGATATTTCATTTAATGACCCATTCACTAAAATTCAGCTTTGGATTCCTGTTAAACAGAGTCCTTATGACGAAGATTAAATAATAAAAAACAAAGAAGCCCCCTAATAGAATCTAAGGCCATTTGTAGACCTATAGAT < 2:106515/141‑1 TCGATATTTCATTTAATGACCCATTCACTAAAATTCAGCTTTGGATTCCTGTTAAACAGAGTCCTTATGACGAAGATTAAATAATAAAAAACAAAGAAGCCCCCTAATAGAATCTAAGGCCATTTGTAGACCTATAGATAT < 1:603622/141‑1 TCGATATTTCATTTAATGACCCATTCACTAAAATTCAGCTTTGGATTCCTGTTAAACAGAGTCCTTATGACGAAGATTAAATAATAAAAAACAAAGAAGCCCCCTAATAGAATCTAAGGCCATTTGTAGACCTATAGATAT < 1:678068/141‑1 TCATTTAATGACCCATTCACTAAAATTCAGCTTTGGATTCCTGTTAAACAGAGTCCTTATGACGAAGATTAAATAATAAAAAACAAAGAAGCCCCCTAATAGAATCTAAGGCCATTTGTAGACCTATAGATATATTAGGGG < 1:122543/141‑1 CCCTAATAGAATCTAAGGCCATTTGTAGACCTATAGATATATTAGGGGGCTTCTTTGTTTTTTATTATTTAATCTTCGTCATAAGGACTCTGTTTAACAGGAATCCAAAGCTGAATTTTAGTGAATGGGTCATTAAATGAA > 1:549011/1‑141 CTAATAGAATCTAAGGCCATTTGTAGACCTATAGATATATTAGGGGGCTTCTTTGTTTTTTATTATTTAATCTTCGTCATAAGGACTCTGTTTAACAGGAATCCAAAGCTGAATTTTAGTGAATGGGTCATTAAATGAAAT < 1:217897/141‑1 CTAATAGAATCTAAGGCCATTTGTAGACCTATAGATATATTAGGGGGCTTCTTTGTTTTTTATTATTTAATCTTCGTCATAAGGACTCTGTTTAACAGGAATCCAAAGCTGAATTTTAGTGAATGGGTCATTAAATGAAAT < 1:745138/141‑1 AGAATCTAAGGCCATTTGTAGACCTATAGATATATTAGGGGGCTTCTTTGTTTTTTATTATTTAATCTTCGTCATAAGGACTCTGTTTAACAGGAATCCAAAGCTGAATTTTAGTGAATGGGTCATTAAATGAAATATCGA < 2:252612/141‑1 TCTCGATATTTCATTTAATGACCCATTCACTAAAATTCAGCTTTGGATTCCTGTTAAACAGAGTCCTTATGACGAAGATTAAATAATAAAAAACAAAGAAGCCCCCTAATA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/1623434‑1623544‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gccccctaataGAATCTAAGGCCATTTGTAGACCTATAGATATATTAGGGGGCTTCTTTGTTTTTTATTATTTAATCTTCGTCATAAGGACTCTGTTTAACAGGAATCCAAAGCTGAATTTTAGTGAATGGGTCATTAAATGAAATATCGA < USA300TCH1516_ALE/1623575‑1623436 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |