| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | 2278438 = | 42 (0.910) | 3 (0.070) | 3/238 | NT | 6.9% | intergenic (+106/+213) | mtlD/ebh_3 | Mannitol‑1‑phosphate 5‑dehydrogenase/Extracellular matrix‑binding protein ebh |
| ? | USA300TCH1516_ALE | 2278497 = | 43 (1.020) | intergenic (+165/+154) | mtlD/ebh_3 | Mannitol‑1‑phosphate 5‑dehydrogenase/Extracellular matrix‑binding protein ebh | |||||
AGTCTAACAGTTAATATGAATTTGTTTTAGTAATGACCAATAGCCATTGAATAGGTGGCTGTGGCTCGAAAATAAAACAAATTATTAACGCAAAAATACTCCTTTCATACATAACACAAGTTAAGTGTCTATGTTGAAGGGAGTATTTTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/2278587‑2278438‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggagtatttttGCGTTAATAATTTGTTTTATTTTCGAGCCACAGCCACCTATTCAATGGCTATTGGTCATTACTAAAACAAATTCATATTAACTGTTAGACTTGGTTACTTAGTAAGGAATATTTCCCTATGAAATAACTAGATGTTCACA > USA300TCH1516_ALE/2278497‑2278636 AGTCTAACAGTTAATATGAATTTGTTTTAGTAATGACCAATAGCCATTGAATAGGTGGCTGTGGCTCGAAAATAAAACAAATTATTAACGCAAAAATACTCCTTTCATACATAACACAAGTTAAGTGTCTATGTTGAAGGG > 2:271444/1‑141 GTCTAACAGTTAATATGAATTTGTTTTAGTAATGACCAATAGCCATTGAATAGGTGGCTGTGGCTCGAAAATAAAACAAATTATTAACGCAAAAATACTCCTTTCATACATAACACAAGTTAAGTGTCTATGTTGAAGGGA < 1:456458/141‑1 CTAACAGTTAATATGAATTTGTTTTAGTAATGACCAATAGCCATTGAATAGGTGGCTGTGGCTCGAAAATAAAACAAATTATTAACGCAAAAATACTCCTTTCATACATAACACAAGTTAAGTGTCTATGTTGAAGGGAGT < 1:80017/141‑1 AACAGTTAATATGAATTTGTTTTAGTAATGACCAATAGCCATTGAATAGGTGGCTGTGGCTCGAAAATAAAACAAATTATTAACGCAAAAATACTCCTTTCATACATAACACAAGTTAAGTGTCTATGTTGAAGGGAGTAT > 1:24577/1‑141 GTTAATATGAATTTGTTTTAGTAATGACCAATAGCCATTGAATAGGTGGCTGTGGCTCGAAAATAAAACAAATTATTAACGCAAAAATACTCCTTTCATACATAACACAAGTTAAGTGTCTATGTTGAAGGGAGTATTTTT > 1:524149/1‑141 CTCCTTTCATACATAACACAAGTTAAGTGTCTATGTTGAAGGGAGTATTTTTGCGTTAATAATTTGTTTTATTTTCGAGCCACAGCCACCTATTCAATGGCTATTGGTCATTACTAAAACAAATTCATATTAACTGTTAGA > 2:200384/1‑141 CCTTTCATACATAACACAAGTTAAGTGTCTATGTTGAAGGGAGTATTTTTGCGTTAATAATTTGTTTTATTTTCGAGCCACAGCCACCTATTCAATGGCTATTGGTCATTACTAAAACAAATTCATATTAACTGTTAGACT > 1:491100/1‑141 AGTTAAGTGTCTATGTTGAAGGGAGTATTTTTGCGTTAATAATTTGTTTTATTTTCGAGCCACAGCCACCTATTCAATGGCTATTGGTCATTACTAAAACAAATTCATATTAACTGTTAGACTTGGTTACTTAGTAAGGAA > 1:521641/1‑141 GTATTTTTGCGTTAATAATTTGTTTTATTTTCGAGCCACAGCCACCTATTCAATGGCTATTGGTCATTACTAAAACAAATTCATATTAACTGTTAGACTTGGTTACTTAGTAAGGAATATTTCCCTATGAAATAACTAGAT > 1:569265/1‑141 ATTTTTGCGTTAATAATTTGTTTTATTTTCGAGCCACAGCCACCTATTCAATGGCTATTGGTCATTACTAAAACAAATTCATATTAACTGTTAGACTTGGTTACTTAGTAAGGAATATTTCCCTATGAAATAACTAGATGT > 1:425036/1‑141 TTTTTGCGTTAATAATTTGTTTTATTTTCGAGCCACAGCCACCTATTCAATGGCTATTGGTCATTACTAAAACAAATTCATATTAACTGTTAGACTTGGTTACTTAGTAAGGAATATTTCCCTATGAAATAACTAGATGTT < 1:113222/141‑1 TTTTTGCGTTAATAATTTGTTTTATTTTCGAGCCACAGCCACCTATTCAATGGCTATTGGTCATTACTAAAACAAATTCATATTAACTGTTAGACTTGGTTACTTAGTAAGGAATATTTCCCTATGAAATAACTAGATGTT < 1:262401/141‑1 TTTTTGCGTTAATAATTTGTTTTATTTTCGAGCCACAGCCACCTATTCAATGGCTATTGGTCATTACTAAAACAAATTCATATTAACTGTTAGACTTGGTTACTTAGTAAGGAATATTTCCCTATGAAATAACTAGATGTT > 2:75701/1‑141 TTTGCGTTAATAATTTGTTTTATTTTCGAGCCACAGCCACCTATTCAATGGCTATTGGTCATTACTAAAACAAATTCATATTAACTGTTAGACTTGGTTACTTAGTAAGGAATATTTCCCTATGAAATAACTAGATGTTCA > 1:60949/1‑141 TGCGTTAATAATTTGTTTTATTTTCGAGCCACAGCCACCTATTCAATGGCTATTGGTCATTACTAAAACAAATTCATATTAACTGTTAGACTTGGTTACTTAGTAAGGAATATTTCCCTATGAAATAACTAGATGTTCACA > 2:201490/1‑141 AGTCTAACAGTTAATATGAATTTGTTTTAGTAATGACCAATAGCCATTGAATAGGTGGCTGTGGCTCGAAAATAAAACAAATTATTAACGCAAAAATACTCCTTTCATACATAACACAAGTTAAGTGTCTATGTTGAAGGGAGTATTTTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/2278587‑2278438‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggagtatttttGCGTTAATAATTTGTTTTATTTTCGAGCCACAGCCACCTATTCAATGGCTATTGGTCATTACTAAAACAAATTCATATTAACTGTTAGACTTGGTTACTTAGTAAGGAATATTTCCCTATGAAATAACTAGATGTTCACA > USA300TCH1516_ALE/2278497‑2278636 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |